Wall clock time and date at job start Mon Mar 8 2021 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.53006 * 109.46652 * 240.00460 * 2 1 3 5 5 Si 1.86295 * 109.47381 * 120.00208 * 2 1 3 6 6 C 1.86295 * 109.47376 * 299.99981 * 5 2 1 7 7 C 1.86302 * 109.46949 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47057 * 60.00015 * 5 2 1 9 9 C 1.42901 * 114.00118 * 179.97438 * 8 5 2 10 10 C 1.50693 * 109.47353 * 179.97438 * 9 8 5 11 11 C 1.33730 * 122.07423 * 0.02562 * 10 9 8 12 12 S 1.76253 * 108.21520 * 180.02562 * 11 10 9 13 13 C 1.76173 * 89.83964 * 0.02562 * 12 11 10 14 14 C 1.47866 * 125.47248 * 179.97438 * 13 12 11 15 15 C 1.39529 * 120.14458 * 47.18088 * 14 13 12 16 16 C 1.37994 * 119.85415 * 179.72130 * 15 14 13 17 17 C 1.38330 * 120.13993 * 0.55203 * 16 15 14 18 18 C 1.38373 * 120.28907 * 359.72423 * 17 16 15 19 19 C 1.37946 * 120.14572 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.07278 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47494 * 254.78251 * 20 19 18 22 22 Si 1.86305 * 109.47093 * 14.78537 * 20 19 18 23 23 H 1.48500 * 109.47330 * 59.99762 * 22 20 19 24 24 H 1.48503 * 109.47164 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47131 * 299.99248 * 22 20 19 26 26 N 1.30227 * 109.05452 * 359.97438 * 13 12 11 27 27 H 1.09001 * 109.46858 * 299.99783 * 1 2 3 28 28 H 1.09000 * 109.47043 * 59.99785 * 1 2 3 29 29 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47373 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47313 * 300.00559 * 3 2 1 32 32 H 1.09001 * 109.47117 * 60.00375 * 3 2 1 33 33 H 1.09001 * 109.47154 * 299.99297 * 4 2 1 34 34 H 1.09001 * 109.47181 * 59.99760 * 4 2 1 35 35 H 1.09002 * 109.46612 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47123 * 180.02562 * 6 5 2 37 37 H 1.09001 * 109.47014 * 300.00361 * 6 5 2 38 38 H 1.08997 * 109.47268 * 59.99937 * 6 5 2 39 39 H 1.09001 * 109.47277 * 300.00000 * 7 5 2 40 40 H 1.08995 * 109.46948 * 60.00427 * 7 5 2 41 41 H 1.09001 * 109.47092 * 180.02562 * 7 5 2 42 42 H 1.09001 * 109.46563 * 59.99870 * 9 8 5 43 43 H 1.09000 * 109.47006 * 300.00534 * 9 8 5 44 44 H 1.07995 * 125.89203 * 359.97438 * 11 10 9 45 45 H 1.07992 * 120.06835 * 359.97438 * 15 14 13 46 46 H 1.07997 * 119.92672 * 180.27258 * 16 15 14 47 47 H 1.08002 * 119.85195 * 179.74080 * 17 16 15 48 48 H 1.08004 * 119.92435 * 180.02562 * 18 17 16 49 49 H 1.08999 * 109.46945 * 134.77946 * 20 19 18 50 50 H 0.96703 * 113.99863 * 60.00137 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 14 2.1511 -0.8782 1.5210 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6075 -2.4160 1.5210 9 6 2.0297 -3.1818 2.6512 10 6 1.4723 -4.5781 2.5485 11 6 0.7068 -4.9634 1.5219 12 16 0.2606 -6.6504 1.7701 13 6 1.1761 -6.6660 3.2751 14 6 1.3185 -7.8260 4.1809 15 6 1.6414 -9.0818 3.6657 16 6 1.7785 -10.1591 4.5171 17 6 1.5853 -9.9984 5.8773 18 6 1.2592 -8.7568 6.3940 19 6 1.1253 -7.6705 5.5544 20 6 0.7708 -6.3190 6.1190 21 8 -0.5959 -6.0234 5.8245 22 14 1.0193 -6.3326 7.9653 23 1 2.4396 -6.6398 8.2714 24 1 0.6705 -5.0006 8.5215 25 1 0.1464 -7.3680 8.5747 26 7 1.7073 -5.4917 3.4618 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8940 -0.5138 3.9322 37 1 1.8935 1.0275 3.0422 38 1 0.4403 -0.0002 3.0423 39 1 4.3771 -1.3929 0.6305 40 1 4.3778 0.1487 1.5204 41 1 4.3776 -1.3931 2.4102 42 1 1.6656 -2.7119 3.5648 43 1 3.1185 -3.2256 2.6742 44 1 0.4120 -4.3470 0.6855 45 1 1.7878 -9.2095 2.6033 46 1 2.0328 -11.1307 4.1200 47 1 1.6896 -10.8456 6.5390 48 1 1.1101 -8.6379 7.4571 49 1 1.4114 -5.5591 5.6717 50 1 -1.2241 -6.6599 6.1923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:21 Heat of formation + Delta-G solvation = -49.759133 kcal Electronic energy + Delta-G solvation = -28603.840626 eV Core-core repulsion = 24846.446102 eV Total energy + Delta-G solvation = -3757.394524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21888 -40.16498 -37.79606 -37.56209 -36.83205 -33.47369 -32.63418 -30.61527 -29.45022 -29.06511 -28.00798 -27.83335 -27.37655 -27.02632 -25.42288 -23.17538 -22.23509 -20.54364 -20.26068 -19.32799 -18.40166 -17.65865 -17.02299 -16.82133 -16.66951 -16.46131 -16.21608 -15.81081 -15.75462 -15.23180 -14.95175 -14.85253 -14.80739 -14.71280 -14.52506 -14.09086 -14.00848 -13.72949 -13.58084 -13.47210 -13.36759 -13.19069 -13.09766 -12.94932 -12.91429 -12.57206 -12.39948 -12.37755 -12.18489 -12.04985 -11.92475 -11.73460 -11.66757 -11.60669 -11.42881 -10.83481 -10.56566 -10.44085 -10.36097 -10.07091 -10.04437 -9.93680 -9.29536 -0.60145 0.06546 0.26104 0.57480 0.75209 1.14451 1.37092 1.40420 1.50909 1.75349 1.77320 1.89646 2.10441 2.39376 2.65672 3.03248 3.56532 3.70845 3.81911 3.90231 4.11621 4.12890 4.12963 4.20218 4.27330 4.38327 4.39831 4.46070 4.47147 4.51505 4.65131 4.73678 4.76449 4.77672 4.78819 4.80792 4.83461 4.83945 4.94836 5.00971 5.06681 5.10007 5.10511 5.20220 5.30632 5.36757 5.37531 5.41845 5.41902 5.45907 5.47599 5.59391 5.64255 5.87735 6.66025 6.70978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.377 4.377 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.323 2.677 6 C -0.520 4.520 7 C -0.519 4.519 8 O -0.634 6.634 9 C 0.160 3.840 10 C 0.041 3.959 11 C -0.219 4.219 12 S 0.098 5.902 13 C 0.116 3.884 14 C -0.026 4.026 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.088 4.088 20 C -0.096 4.096 21 O -0.549 6.549 22 Si 0.983 3.017 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.234 1.234 26 N -0.471 5.471 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.196 0.804 45 H 0.137 0.863 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.142 0.858 49 H 0.116 0.884 50 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -3.172 1.280 3.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.421 4.421 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.453 2.547 6 C -0.622 4.622 7 C -0.620 4.620 8 O -0.592 6.592 9 C 0.081 3.919 10 C -0.091 4.091 11 C -0.358 4.358 12 S 0.355 5.645 13 C -0.159 4.159 14 C -0.030 4.030 15 C -0.120 4.120 16 C -0.130 4.130 17 C -0.114 4.114 18 C -0.153 4.153 19 C -0.091 4.091 20 C -0.205 4.205 21 O -0.356 6.356 22 Si 0.806 3.194 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.157 1.157 26 N -0.186 5.186 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.213 0.787 45 H 0.155 0.845 46 H 0.174 0.826 47 H 0.175 0.825 48 H 0.159 0.841 49 H 0.134 0.866 50 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.487 -3.443 1.515 3.793 hybrid contribution 0.150 1.098 -0.416 1.184 sum 0.637 -2.345 1.100 2.667 Atomic orbital electron populations 1.21550 0.94227 1.01826 1.01854 1.25853 1.00369 1.02991 1.12841 1.21606 1.01339 0.94624 1.02272 1.21549 1.01041 1.00047 0.96788 0.76111 0.62452 0.51951 0.64172 1.27126 1.06878 1.10001 1.18178 1.27099 1.25194 1.05144 1.04592 1.85219 1.79847 1.46731 1.47437 1.20258 0.98423 0.85508 0.87670 1.20160 1.00479 0.97051 0.91412 1.26937 1.05510 0.97429 1.05926 1.84938 1.49734 1.09485 1.20306 1.25741 0.98777 0.94566 0.96865 1.17810 1.03619 0.90281 0.91295 1.21488 0.98258 0.91140 1.01145 1.21460 0.98702 0.99410 0.93424 1.21649 0.96168 0.97554 0.96002 1.21311 1.00932 0.92824 1.00206 1.20435 0.99659 0.96471 0.92554 1.25313 0.86280 0.96045 1.12896 1.86535 1.14769 1.54193 1.80118 0.85258 0.81258 0.80069 0.72824 1.17857 1.20208 1.15731 1.66174 1.23530 1.00115 1.28779 0.92218 0.93220 0.92466 0.91744 0.93015 0.91826 0.92423 0.93249 0.92105 0.91211 0.90142 0.91222 0.91064 0.90140 0.91151 0.89838 0.89528 0.78686 0.84511 0.82603 0.82549 0.84057 0.86611 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.08 7.85 71.98 0.56 0.49 16 2 C -0.38 0.21 0.53 -10.79 -0.01 0.20 16 3 C -0.14 0.18 7.85 71.98 0.56 0.75 16 4 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 5 Si 1.32 -2.40 8.45 68.60 0.58 -1.82 16 6 C -0.52 0.38 8.50 113.37 0.96 1.35 16 7 C -0.52 0.67 8.50 113.37 0.96 1.64 16 8 O -0.63 -0.93 7.41 -148.98 -1.10 -2.04 16 9 C 0.16 0.43 5.72 71.23 0.41 0.84 16 10 C 0.04 0.29 6.69 41.61 0.28 0.56 16 11 C -0.22 -1.24 10.53 66.80 0.70 -0.53 16 12 S 0.10 0.46 23.38 -56.49 -1.32 -0.86 16 13 C 0.12 0.84 6.36 87.48 0.56 1.40 16 14 C -0.03 -0.12 5.85 -20.09 -0.12 -0.24 16 15 C -0.10 -0.07 9.75 22.52 0.22 0.15 16 16 C -0.11 0.33 10.03 22.23 0.22 0.56 16 17 C -0.10 0.33 10.04 22.32 0.22 0.55 16 18 C -0.13 0.12 8.65 22.23 0.19 0.31 16 19 C -0.09 -0.27 5.29 -19.61 -0.10 -0.38 16 20 C -0.10 -0.35 2.08 71.23 0.15 -0.20 16 21 O -0.55 -2.38 12.82 -148.98 -1.91 -4.29 16 22 Si 0.98 0.48 25.49 68.60 1.75 2.23 16 23 H -0.25 -0.38 7.11 99.48 0.71 0.33 16 24 H -0.28 -1.19 7.11 99.48 0.71 -0.48 16 25 H -0.23 0.59 6.74 99.48 0.67 1.26 16 26 N -0.47 -4.20 8.60 -177.80 -1.53 -5.73 16 27 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 28 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.05 7.96 -2.39 -0.02 0.04 16 30 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 31 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 33 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 34 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 36 H 0.07 -0.06 7.48 -2.39 -0.02 -0.08 16 37 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 38 H 0.07 0.02 7.79 -2.39 -0.02 0.00 16 39 H 0.07 -0.05 7.79 -2.39 -0.02 -0.06 16 40 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 41 H 0.07 -0.11 7.48 -2.39 -0.02 -0.13 16 42 H 0.08 0.07 7.21 -2.39 -0.02 0.06 16 43 H 0.09 0.01 7.21 -2.39 -0.02 -0.01 16 44 H 0.20 0.57 7.51 -2.91 -0.02 0.55 16 45 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 46 H 0.16 -1.25 8.06 -2.91 -0.02 -1.28 16 47 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 48 H 0.14 -0.58 4.88 -2.91 -0.01 -0.60 16 49 H 0.12 0.80 6.06 -2.39 -0.01 0.79 16 50 H 0.39 -1.26 8.70 -74.06 -0.64 -1.90 16 Total: 0.00 -12.34 412.57 3.82 -8.52 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: 1.00 Total: -4.00 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.35 Total: 7.98 kcal Atomic # 7 Polarization: -4.20 SS G_CDS: -1.53 Total: -5.73 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -3.01 Total: -6.32 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.33 Total: 0.40 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -1.32 Total: -0.86 kcal Total: -12.34 3.82 -8.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.238 kcal (2) G-P(sol) polarization free energy of solvation -12.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds