Wall clock time and date at job start Mon Mar 8 2021 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47321 * 2 1 4 4 C 1.50708 * 109.47179 * 240.00256 * 2 1 3 5 5 C 1.39315 * 120.05951 * 285.38794 * 4 2 1 6 6 C 1.48392 * 120.11985 * 359.97438 * 5 4 2 7 7 C 1.39338 * 120.11986 * 303.59728 * 6 5 4 8 8 C 1.38020 * 119.87641 * 179.97438 * 7 6 5 9 9 C 1.38319 * 120.12285 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.87964 * 180.02562 * 9 8 7 11 11 H 1.09001 * 112.84730 * 348.79978 * 10 9 8 12 12 C 1.53779 * 113.61548 * 119.99440 * 10 9 8 13 13 C 1.53783 * 87.07835 * 139.98148 * 12 10 9 14 14 H 1.08998 * 113.61226 * 89.20465 * 13 12 10 15 15 O 1.42905 * 113.61207 * 220.02076 * 13 12 10 16 16 C 1.53781 * 87.17389 * 334.61087 * 13 12 10 17 17 C 1.38329 * 120.24200 * 0.27209 * 9 8 7 18 18 C 1.38014 * 120.12068 * 359.45307 * 17 9 8 19 19 C 1.39359 * 119.75913 * 180.25163 * 5 4 2 20 20 C 1.37999 * 119.87313 * 359.44797 * 19 5 4 21 21 C 1.38341 * 120.12346 * 0.57564 * 20 19 5 22 22 C 1.38035 * 120.05938 * 105.36229 * 4 2 1 23 23 H 0.96703 * 113.99470 * 300.00045 * 1 2 3 24 24 H 1.08999 * 109.47616 * 119.99934 * 2 1 3 25 25 H 1.48491 * 110.00126 * 178.68189 * 3 2 1 26 26 H 1.48505 * 109.99957 * 300.00514 * 3 2 1 27 27 H 1.07998 * 120.06177 * 359.95625 * 7 6 5 28 28 H 1.08000 * 119.93936 * 179.97438 * 8 7 6 29 29 H 1.09007 * 113.60991 * 25.43605 * 12 10 9 30 30 H 1.08994 * 113.69505 * 254.54444 * 12 10 9 31 31 H 0.96698 * 113.99519 * 178.47140 * 15 13 12 32 32 H 1.08997 * 113.61455 * 139.94408 * 16 13 12 33 33 H 1.09005 * 113.61424 * 270.84399 * 16 13 12 34 34 H 1.08001 * 119.93727 * 179.73118 * 17 9 8 35 35 H 1.07998 * 120.06185 * 180.27148 * 18 17 9 36 36 H 1.08000 * 120.06209 * 179.72807 * 19 5 4 37 37 H 1.07997 * 119.93996 * 180.29853 * 20 19 5 38 38 H 1.07994 * 119.88093 * 179.69728 * 21 20 19 39 39 H 1.07999 * 119.94589 * 0.02800 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 1.8623 -2.0995 -1.3115 6 6 1.2948 -2.8836 -0.1867 7 6 1.8303 -2.7581 1.0935 8 6 1.2982 -3.4895 2.1360 9 6 0.2350 -4.3453 1.9120 10 6 -0.3422 -5.1408 3.0544 11 1 0.2773 -5.1050 3.9506 12 6 -1.8281 -4.8475 3.3206 13 6 -2.0014 -6.3563 3.5627 14 1 -1.8373 -6.6540 4.5984 15 8 -3.2103 -6.8884 3.0173 16 6 -0.7741 -6.5648 2.6599 17 6 -0.2973 -4.4776 0.6420 18 6 0.2233 -3.7468 -0.4067 19 6 2.3335 -2.7503 -2.4501 20 6 2.8551 -2.0157 -3.4954 21 6 2.9217 -0.6365 -3.4096 22 6 2.4603 0.0142 -2.2797 23 1 -0.3932 0.4417 0.7651 24 1 1.7924 -0.5138 0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5615 2.4680 -1.2085 27 1 2.6604 -2.0901 1.2696 28 1 1.7128 -3.3933 3.1287 29 1 -2.3645 -4.4814 2.4451 30 1 -2.0024 -4.2399 4.2085 31 1 -3.3139 -7.8412 3.1460 32 1 -0.0974 -7.3418 3.0155 33 1 -1.0218 -6.6690 1.6035 34 1 -1.1247 -5.1505 0.4718 35 1 -0.1958 -3.8476 -1.3969 36 1 2.2864 -3.8272 -2.5162 37 1 3.2161 -2.5186 -4.3803 38 1 3.3351 -0.0659 -4.2279 39 1 2.5143 1.0910 -2.2181 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651794_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:08:09 Heat of formation + Delta-G solvation = 0.070570 kcal Electronic energy + Delta-G solvation = -21631.557086 eV Core-core repulsion = 18471.190443 eV Total energy + Delta-G solvation = -3160.366643 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36212 -40.54392 -38.87836 -37.47753 -36.07032 -33.48922 -32.78011 -31.78201 -30.16976 -26.92841 -26.72840 -25.76620 -23.87927 -23.37051 -22.33074 -21.61639 -20.26940 -18.77480 -18.34416 -18.14365 -16.95017 -16.76293 -16.50792 -16.40727 -15.63709 -15.58737 -15.21909 -15.05367 -14.77505 -14.40034 -14.22421 -13.91109 -13.83512 -13.58597 -13.50489 -13.36787 -13.10308 -12.62267 -12.50690 -12.21398 -12.06928 -11.84972 -11.73444 -11.64511 -11.33873 -10.76406 -10.24633 -10.05932 -9.90419 -9.74939 -9.09477 -4.98690 -0.01275 0.29598 0.54566 0.66759 1.28519 1.62928 1.96448 2.61527 2.84607 3.21251 3.44321 3.53886 3.60534 3.66632 3.86175 3.89415 3.91424 3.95575 4.04060 4.09744 4.11147 4.11919 4.28034 4.42670 4.48788 4.52161 4.58750 4.68794 4.76120 4.79750 4.84923 4.95495 4.96260 5.04587 5.06879 5.19361 5.31988 5.38486 5.44724 5.49045 5.54080 5.71993 5.76141 5.94040 6.09715 6.67792 6.69501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.073 4.073 3 Si 0.676 3.324 4 C -0.061 4.061 5 C -0.023 4.023 6 C -0.040 4.040 7 C -0.106 4.106 8 C -0.113 4.113 9 C -0.067 4.067 10 C -0.073 4.073 11 H 0.100 0.900 12 C -0.119 4.119 13 C 0.074 3.926 14 H 0.083 0.917 15 O -0.560 6.560 16 C -0.164 4.164 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.122 4.122 23 H 0.379 0.621 24 H 0.077 0.923 25 H -0.254 1.254 26 H -0.250 1.250 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.379 0.621 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -0.521 3.356 3.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.184 4.184 3 Si 0.578 3.422 4 C -0.061 4.061 5 C -0.023 4.023 6 C -0.040 4.040 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.067 4.067 10 C -0.091 4.091 11 H 0.119 0.881 12 C -0.156 4.156 13 C 0.015 3.985 14 H 0.100 0.900 15 O -0.366 6.366 16 C -0.201 4.201 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.140 4.140 23 H 0.226 0.774 24 H 0.095 0.905 25 H -0.179 1.179 26 H -0.175 1.175 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.226 0.774 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.463 0.389 2.208 2.677 hybrid contribution 0.265 -1.067 -0.122 1.106 sum 1.727 -0.678 2.085 2.791 Atomic orbital electron populations 1.86524 1.16832 1.81744 1.49293 1.24808 0.86168 1.09755 0.97681 0.95428 0.81003 0.78551 0.87265 1.19350 0.99286 0.92740 0.94748 1.18652 0.97849 0.91870 0.93923 1.18613 0.96258 0.96669 0.92450 1.21106 0.99927 0.99493 0.91861 1.20933 0.96481 0.96805 0.98890 1.19635 0.95861 0.97072 0.94120 1.21326 0.95885 0.95057 0.96834 0.88136 1.23157 0.94504 0.94760 1.03173 1.23372 0.83797 0.95277 0.96031 0.89956 1.86540 1.40838 1.27758 1.81431 1.23869 0.98103 0.96452 1.01726 1.20942 1.00137 0.99670 0.92182 1.21118 0.95502 0.95583 0.99207 1.21292 0.98270 1.00157 0.92657 1.21175 0.99061 0.93980 0.98703 1.21164 0.99508 0.94826 0.97606 1.20950 0.99935 0.99197 0.93879 0.77364 0.90540 1.17878 1.17459 0.86048 0.85853 0.88847 0.90503 0.77375 0.90957 0.88792 0.85763 0.86037 0.85379 0.85311 0.85479 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.85 12.79 -35.23 -0.45 -1.30 16 2 C -0.07 -0.09 2.06 36.01 0.07 -0.01 16 3 Si 0.68 -0.13 30.19 -169.99 -5.13 -5.26 16 4 C -0.06 -0.20 5.30 -104.29 -0.55 -0.76 16 5 C -0.02 -0.07 5.40 -104.90 -0.57 -0.64 16 6 C -0.04 -0.11 4.85 -104.90 -0.51 -0.61 16 7 C -0.11 -0.16 7.95 -39.25 -0.31 -0.47 16 8 C -0.11 -0.08 9.69 -39.63 -0.38 -0.47 16 9 C -0.07 -0.06 5.30 -104.56 -0.55 -0.62 16 10 C -0.07 0.04 3.98 -90.87 -0.36 -0.33 16 11 H 0.10 -0.16 8.09 -51.93 -0.42 -0.58 16 12 C -0.12 -0.01 7.38 -25.92 -0.19 -0.20 16 13 C 0.07 -0.03 5.21 -25.92 -0.13 -0.17 16 14 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 15 O -0.56 -0.51 13.67 -35.23 -0.48 -0.99 16 16 C -0.16 0.11 7.30 -25.83 -0.19 -0.08 16 17 C -0.11 -0.18 8.60 -39.63 -0.34 -0.52 16 18 C -0.10 -0.23 9.63 -39.25 -0.38 -0.61 16 19 C -0.11 -0.23 9.63 -39.25 -0.38 -0.61 16 20 C -0.11 -0.17 10.03 -39.63 -0.40 -0.57 16 21 C -0.11 -0.23 10.04 -39.52 -0.40 -0.63 16 22 C -0.12 -0.39 8.65 -39.63 -0.34 -0.73 16 23 H 0.38 -1.20 8.74 45.56 0.40 -0.80 16 24 H 0.08 0.00 4.92 -51.93 -0.26 -0.26 16 25 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 26 H -0.25 -0.67 6.76 56.52 0.38 -0.28 16 27 H 0.12 0.04 6.97 -52.49 -0.37 -0.32 16 28 H 0.12 -0.14 8.05 -52.49 -0.42 -0.57 16 29 H 0.09 0.13 7.73 -51.93 -0.40 -0.27 16 30 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.38 -1.19 9.12 45.56 0.42 -0.77 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 33 H 0.09 0.01 6.30 -51.93 -0.33 -0.32 16 34 H 0.12 0.10 6.64 -52.49 -0.35 -0.24 16 35 H 0.12 0.22 8.06 -52.49 -0.42 -0.21 16 36 H 0.13 0.09 8.06 -52.49 -0.42 -0.34 16 37 H 0.13 -0.09 8.06 -52.49 -0.42 -0.52 16 38 H 0.13 -0.01 8.06 -52.49 -0.42 -0.43 16 39 H 0.12 0.32 4.89 -52.49 -0.26 0.06 16 LS Contribution 319.60 15.07 4.82 4.82 Total: 0.00 -6.98 319.60 -11.32 -18.30 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -4.16 Total: -7.57 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -5.91 Total: -8.01 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.93 Total: -2.29 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: -5.13 Total: -5.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -6.98 -11.32 -18.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.375 kcal (2) G-P(sol) polarization free energy of solvation -6.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds