Wall clock time and date at job start Mon Mar 8 2021 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47321 * 2 1 4 4 C 1.50708 * 109.47179 * 240.00256 * 2 1 3 5 5 C 1.39315 * 120.05951 * 285.38794 * 4 2 1 6 6 C 1.48392 * 120.11985 * 359.97438 * 5 4 2 7 7 C 1.39338 * 120.11986 * 303.59728 * 6 5 4 8 8 C 1.38020 * 119.87641 * 179.97438 * 7 6 5 9 9 C 1.38319 * 120.12285 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.87964 * 180.02562 * 9 8 7 11 11 H 1.09001 * 112.84730 * 348.79978 * 10 9 8 12 12 C 1.53779 * 113.61548 * 119.99440 * 10 9 8 13 13 C 1.53783 * 87.07835 * 139.98148 * 12 10 9 14 14 H 1.08998 * 113.61226 * 89.20465 * 13 12 10 15 15 O 1.42905 * 113.61207 * 220.02076 * 13 12 10 16 16 C 1.53781 * 87.17389 * 334.61087 * 13 12 10 17 17 C 1.38329 * 120.24200 * 0.27209 * 9 8 7 18 18 C 1.38014 * 120.12068 * 359.45307 * 17 9 8 19 19 C 1.39359 * 119.75913 * 180.25163 * 5 4 2 20 20 C 1.37999 * 119.87313 * 359.44797 * 19 5 4 21 21 C 1.38341 * 120.12346 * 0.57564 * 20 19 5 22 22 C 1.38035 * 120.05938 * 105.36229 * 4 2 1 23 23 H 0.96703 * 113.99470 * 300.00045 * 1 2 3 24 24 H 1.08999 * 109.47616 * 119.99934 * 2 1 3 25 25 H 1.48491 * 110.00126 * 178.68189 * 3 2 1 26 26 H 1.48505 * 109.99957 * 300.00514 * 3 2 1 27 27 H 1.07998 * 120.06177 * 359.95625 * 7 6 5 28 28 H 1.08000 * 119.93936 * 179.97438 * 8 7 6 29 29 H 1.09007 * 113.60991 * 25.43605 * 12 10 9 30 30 H 1.08994 * 113.69505 * 254.54444 * 12 10 9 31 31 H 0.96698 * 113.99519 * 178.47140 * 15 13 12 32 32 H 1.08997 * 113.61455 * 139.94408 * 16 13 12 33 33 H 1.09005 * 113.61424 * 270.84399 * 16 13 12 34 34 H 1.08001 * 119.93727 * 179.73118 * 17 9 8 35 35 H 1.07998 * 120.06185 * 180.27148 * 18 17 9 36 36 H 1.08000 * 120.06209 * 179.72807 * 19 5 4 37 37 H 1.07997 * 119.93996 * 180.29853 * 20 19 5 38 38 H 1.07994 * 119.88093 * 179.69728 * 21 20 19 39 39 H 1.07999 * 119.94589 * 0.02800 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 1.8623 -2.0995 -1.3115 6 6 1.2948 -2.8836 -0.1867 7 6 1.8303 -2.7581 1.0935 8 6 1.2982 -3.4895 2.1360 9 6 0.2350 -4.3453 1.9120 10 6 -0.3422 -5.1408 3.0544 11 1 0.2773 -5.1050 3.9506 12 6 -1.8281 -4.8475 3.3206 13 6 -2.0014 -6.3563 3.5627 14 1 -1.8373 -6.6540 4.5984 15 8 -3.2103 -6.8884 3.0173 16 6 -0.7741 -6.5648 2.6599 17 6 -0.2973 -4.4776 0.6420 18 6 0.2233 -3.7468 -0.4067 19 6 2.3335 -2.7503 -2.4501 20 6 2.8551 -2.0157 -3.4954 21 6 2.9217 -0.6365 -3.4096 22 6 2.4603 0.0142 -2.2797 23 1 -0.3932 0.4417 0.7651 24 1 1.7924 -0.5138 0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5615 2.4680 -1.2085 27 1 2.6604 -2.0901 1.2696 28 1 1.7128 -3.3933 3.1287 29 1 -2.3645 -4.4814 2.4451 30 1 -2.0024 -4.2399 4.2085 31 1 -3.3139 -7.8412 3.1460 32 1 -0.0974 -7.3418 3.0155 33 1 -1.0218 -6.6690 1.6035 34 1 -1.1247 -5.1505 0.4718 35 1 -0.1958 -3.8476 -1.3969 36 1 2.2864 -3.8272 -2.5162 37 1 3.2161 -2.5186 -4.3803 38 1 3.3351 -0.0659 -4.2279 39 1 2.5143 1.0910 -2.2181 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:08:09 Heat of formation + Delta-G solvation = 3.798673 kcal Electronic energy + Delta-G solvation = -21631.395423 eV Core-core repulsion = 18471.190443 eV Total energy + Delta-G solvation = -3160.204980 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41937 -40.58336 -38.92307 -37.55213 -36.07687 -33.57460 -32.89902 -31.86677 -30.25311 -27.01079 -26.68230 -25.79971 -23.97591 -23.43237 -22.43124 -21.69836 -20.23921 -18.78254 -18.40356 -18.22612 -17.00367 -16.85420 -16.54319 -16.42927 -15.72861 -15.64040 -15.28687 -15.12658 -14.83621 -14.43639 -14.27423 -14.00478 -13.96952 -13.64713 -13.55447 -13.37515 -13.19164 -12.64879 -12.54359 -12.24251 -12.18894 -11.94787 -11.79127 -11.67093 -11.29003 -10.71467 -10.30564 -10.18787 -10.04832 -9.83412 -9.19785 -5.00744 -0.13717 0.13973 0.45521 0.55351 1.24959 1.58305 1.90914 2.49313 2.75608 3.29844 3.39623 3.53427 3.60860 3.67321 3.71538 3.88962 3.95549 3.96326 4.02458 4.03578 4.06304 4.13708 4.21566 4.36032 4.42435 4.51170 4.54861 4.67112 4.74046 4.80781 4.81972 4.85911 4.97300 5.00451 5.05828 5.17656 5.25913 5.30735 5.35120 5.37131 5.45439 5.61219 5.72016 5.82714 6.02510 6.85448 6.90030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.770 3.230 4 C -0.081 4.081 5 C -0.038 4.038 6 C -0.050 4.050 7 C -0.112 4.112 8 C -0.113 4.113 9 C -0.071 4.071 10 C -0.067 4.067 11 H 0.119 0.881 12 C -0.124 4.124 13 C 0.074 3.926 14 H 0.101 0.899 15 O -0.584 6.584 16 C -0.162 4.162 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.144 4.144 23 H 0.398 0.602 24 H 0.088 0.912 25 H -0.286 1.286 26 H -0.292 1.292 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -0.942 4.521 4.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.192 4.192 3 Si 0.675 3.325 4 C -0.081 4.081 5 C -0.038 4.038 6 C -0.050 4.050 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.071 4.071 10 C -0.085 4.085 11 H 0.137 0.863 12 C -0.162 4.162 13 C 0.016 3.984 14 H 0.119 0.881 15 O -0.392 6.392 16 C -0.200 4.200 17 C -0.136 4.136 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.161 4.161 23 H 0.248 0.752 24 H 0.106 0.894 25 H -0.213 1.213 26 H -0.220 1.220 27 H 0.149 0.851 28 H 0.164 0.836 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.808 -0.056 3.402 3.853 hybrid contribution 0.133 -0.959 -0.535 1.106 sum 1.942 -1.014 2.867 3.608 Atomic orbital electron populations 1.86476 1.17094 1.82327 1.50812 1.25004 0.86128 1.10768 0.97331 0.94487 0.77586 0.75666 0.84730 1.19689 0.99585 0.93190 0.95675 1.18867 0.98228 0.92101 0.94565 1.18692 0.96543 0.96894 0.92902 1.21271 1.00210 0.99811 0.91648 1.21205 0.96082 0.96051 0.99693 1.19846 0.95832 0.97147 0.94234 1.21371 0.95608 0.94678 0.96865 0.86332 1.23159 0.94816 0.95478 1.02701 1.23480 0.83346 0.94735 0.96877 0.88123 1.86496 1.41519 1.29354 1.81835 1.23824 0.98299 0.96742 1.01094 1.21029 1.00285 0.99708 0.92567 1.21185 0.95997 0.96267 0.99426 1.21541 0.98141 1.00867 0.92711 1.21468 0.98529 0.93902 0.99274 1.21460 0.99210 0.95381 0.97788 1.21134 1.00930 0.99327 0.94717 0.75160 0.89386 1.21335 1.21961 0.85142 0.83589 0.90764 0.89711 0.75605 0.89929 0.89995 0.85680 0.86389 0.84375 0.83043 0.83675 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.07 12.79 -148.98 -1.91 -3.97 16 2 C -0.08 -0.24 2.06 71.24 0.15 -0.09 16 3 Si 0.77 0.17 30.19 68.60 2.07 2.24 16 4 C -0.08 -0.63 5.30 -19.65 -0.10 -0.74 16 5 C -0.04 -0.28 5.40 -20.04 -0.11 -0.39 16 6 C -0.05 -0.31 4.85 -20.04 -0.10 -0.41 16 7 C -0.11 -0.34 7.95 22.48 0.18 -0.16 16 8 C -0.11 -0.08 9.69 22.24 0.22 0.14 16 9 C -0.07 -0.12 5.30 -19.82 -0.10 -0.23 16 10 C -0.07 0.12 3.98 -10.96 -0.04 0.08 16 11 H 0.12 -0.63 8.09 -2.39 -0.02 -0.65 16 12 C -0.12 0.01 7.38 31.12 0.23 0.24 16 13 C 0.07 -0.11 5.21 31.12 0.16 0.05 16 14 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 15 O -0.58 -1.03 13.67 -148.98 -2.04 -3.07 16 16 C -0.16 0.29 7.30 31.18 0.23 0.52 16 17 C -0.12 -0.49 8.60 22.24 0.19 -0.30 16 18 C -0.11 -0.68 9.63 22.48 0.22 -0.46 16 19 C -0.11 -0.60 9.63 22.48 0.22 -0.38 16 20 C -0.11 -0.38 10.03 22.24 0.22 -0.16 16 21 C -0.12 -0.56 10.04 22.31 0.22 -0.34 16 22 C -0.14 -1.10 8.65 22.24 0.19 -0.91 16 23 H 0.40 -2.54 8.74 -74.06 -0.65 -3.18 16 24 H 0.09 0.00 4.92 -2.39 -0.01 -0.02 16 25 H -0.29 -1.52 7.11 99.48 0.71 -0.82 16 26 H -0.29 -2.03 6.76 99.48 0.67 -1.36 16 27 H 0.13 0.07 6.97 -2.91 -0.02 0.05 16 28 H 0.15 -0.62 8.05 -2.91 -0.02 -0.65 16 29 H 0.07 0.28 7.73 -2.38 -0.02 0.26 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.39 -2.54 9.12 -74.06 -0.68 -3.22 16 32 H 0.08 -0.32 8.14 -2.39 -0.02 -0.33 16 33 H 0.08 0.06 6.30 -2.38 -0.02 0.05 16 34 H 0.13 0.40 6.64 -2.91 -0.02 0.38 16 35 H 0.12 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.14 0.30 8.06 -2.91 -0.02 0.27 16 37 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 38 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.12 0.83 4.89 -2.91 -0.01 0.82 16 Total: 0.00 -17.03 319.60 -0.14 -17.17 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -0.24 Total: -8.85 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 1.97 Total: -3.53 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -3.94 Total: -7.04 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: 2.07 Total: 2.24 kcal Total: -17.03 -0.14 -17.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.972 kcal (2) G-P(sol) polarization free energy of solvation -17.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds