Wall clock time and date at job start Mon Mar 8 2021 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46725 * 2 1 4 4 C 1.53001 * 109.47070 * 239.99980 * 2 1 3 5 5 O 1.45198 * 109.47017 * 119.99862 * 2 1 3 6 6 C 1.34633 * 117.00309 * 60.00497 * 5 2 1 7 7 O 1.21514 * 119.99895 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00243 * 179.97438 * 6 5 2 9 9 C 1.46507 * 120.00016 * 179.71945 * 8 6 5 10 10 H 1.08996 * 112.84593 * 24.08264 * 9 8 6 11 11 C 1.53783 * 113.61234 * 155.27642 * 9 8 6 12 12 C 1.53776 * 87.08109 * 89.11931 * 11 9 8 13 13 H 1.09004 * 113.61360 * 270.88503 * 12 11 9 14 14 C 1.50703 * 113.61723 * 140.06440 * 12 11 9 15 15 C 1.37989 * 119.94276 * 119.99732 * 14 12 11 16 16 C 1.39354 * 119.88143 * 179.97438 * 15 14 12 17 17 C 1.48389 * 120.12370 * 179.97438 * 16 15 14 18 18 C 1.39318 * 120.12442 * 123.09444 * 17 16 15 19 19 C 1.50698 * 120.06084 * 359.97438 * 18 17 16 20 20 O 1.42902 * 109.47018 * 285.00903 * 19 18 17 21 21 Si 1.86292 * 109.47393 * 165.00713 * 19 18 17 22 22 C 1.38038 * 119.87816 * 179.69834 * 18 17 16 23 23 C 1.38304 * 120.12162 * 0.59774 * 22 18 17 24 24 C 1.38348 * 120.24155 * 359.68112 * 23 22 18 25 25 C 1.37995 * 120.12007 * 0.02562 * 24 23 22 26 26 C 1.39317 * 119.75556 * 359.97438 * 16 15 14 27 27 C 1.38039 * 119.87760 * 0.02562 * 26 16 15 28 28 C 1.38301 * 120.12036 * 359.73990 * 27 26 16 29 29 C 1.53775 * 113.61460 * 252.77457 * 9 8 6 30 30 H 1.08999 * 109.46865 * 299.99681 * 1 2 3 31 31 H 1.08998 * 109.47298 * 60.00088 * 1 2 3 32 32 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46896 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47468 * 300.00022 * 3 2 1 35 35 H 1.09000 * 109.47638 * 60.00229 * 3 2 1 36 36 H 1.08993 * 109.47370 * 299.99817 * 4 2 1 37 37 H 1.08998 * 109.47116 * 59.99820 * 4 2 1 38 38 H 1.08997 * 109.46757 * 179.97438 * 4 2 1 39 39 H 0.96999 * 119.99986 * 0.02562 * 8 6 5 40 40 H 1.08998 * 113.61232 * 203.66642 * 11 9 8 41 41 H 1.08994 * 113.61414 * 334.48368 * 11 9 8 42 42 H 1.08009 * 120.06072 * 359.96181 * 15 14 12 43 43 H 1.08999 * 109.47158 * 45.00567 * 19 18 17 44 44 H 0.96701 * 113.99615 * 299.99849 * 20 19 18 45 45 H 1.48501 * 110.00229 * 179.97438 * 21 19 18 46 46 H 1.48503 * 110.00315 * 301.31874 * 21 19 18 47 47 H 1.08003 * 119.94113 * 180.28436 * 22 18 17 48 48 H 1.08001 * 119.88327 * 179.69790 * 23 22 18 49 49 H 1.07995 * 119.93845 * 180.02562 * 24 23 22 50 50 H 1.08009 * 120.06210 * 180.02562 * 25 24 23 51 51 H 1.07998 * 120.05960 * 179.97438 * 26 16 15 52 52 H 1.07999 * 119.93929 * 180.02562 * 27 26 16 53 53 H 1.08002 * 119.87619 * 180.28084 * 28 27 26 54 54 H 1.09000 * 113.62012 * 25.43490 * 29 9 8 55 55 H 1.09003 * 113.61014 * 156.33691 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9511 -2.5095 0.5040 8 7 2.0682 -2.6656 2.4167 9 6 1.6695 -4.0652 2.5860 10 1 1.4173 -4.5504 1.6432 11 6 2.6386 -4.8804 3.4585 12 6 1.7972 -4.4390 4.6675 13 1 2.1286 -3.4999 5.1106 14 6 1.5909 -5.5275 5.6892 15 6 2.0372 -5.3512 6.9830 16 6 1.8452 -6.3584 7.9269 17 6 2.3235 -6.1748 9.3195 18 6 1.4316 -6.2796 10.3846 19 6 -0.0223 -6.5794 10.1250 20 8 -0.6667 -5.4091 9.6177 21 14 -0.8425 -7.1002 11.7146 22 6 1.8831 -6.1141 11.6785 23 6 3.2158 -5.8323 11.9178 24 6 4.1048 -5.7214 10.8635 25 6 3.6653 -5.8910 9.5665 26 6 1.2027 -7.5382 7.5581 27 6 0.7603 -7.7039 6.2611 28 6 0.9492 -6.6991 5.3297 29 6 0.6208 -4.2777 3.6904 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 2.6277 -2.2367 3.0829 40 1 2.6005 -5.9530 3.2682 41 1 3.6554 -4.4878 3.4656 42 1 2.5345 -4.4345 7.2636 43 1 -0.1025 -7.3840 9.3942 44 1 -0.6343 -4.6511 10.2173 45 1 -2.2770 -7.3981 11.4721 46 1 -0.1613 -8.2977 12.2690 47 1 1.1934 -6.1997 12.5053 48 1 3.5640 -5.6987 12.9314 49 1 5.1445 -5.5017 11.0560 50 1 4.3602 -5.8045 8.7441 51 1 1.0517 -8.3221 8.2855 52 1 0.2618 -8.6180 5.9742 53 1 0.5974 -6.8311 4.3171 54 1 0.0081 -3.3976 3.8860 55 1 0.0310 -5.1855 3.5635 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_14315990.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:02:03 Heat of formation + Delta-G solvation = -28.748509 kcal Electronic energy + Delta-G solvation = -34775.574299 eV Core-core repulsion = 30323.935628 eV Total energy + Delta-G solvation = -4451.638670 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.02904 -41.33621 -40.57000 -39.05975 -37.80770 -37.53256 -35.40803 -34.37423 -33.40257 -32.64667 -31.80053 -29.93535 -28.38748 -28.31894 -26.96505 -26.72796 -26.24801 -24.58649 -23.83778 -22.72331 -22.59496 -21.71226 -21.17206 -19.99311 -19.36434 -18.46839 -17.85326 -17.59180 -17.21545 -17.12089 -16.86299 -16.54174 -16.34734 -16.07972 -15.82528 -15.60483 -15.45339 -15.36857 -14.99599 -14.86200 -14.67232 -14.42637 -14.33123 -14.16475 -14.06642 -13.66816 -13.50925 -13.38059 -13.29163 -13.11179 -13.00644 -12.94019 -12.88673 -12.79052 -12.53199 -12.49994 -12.34215 -12.24474 -12.14315 -11.78554 -11.70089 -11.64368 -11.41870 -11.22772 -11.12552 -10.42360 -10.23856 -10.12632 -9.87179 -9.65580 -9.22223 -5.05944 -0.02187 0.33541 0.42199 0.67302 1.10438 1.27505 1.60045 1.70152 1.92045 2.64466 2.81950 3.08479 3.41593 3.50167 3.59613 3.65467 3.72356 3.74293 3.75508 3.77987 3.91353 3.92561 4.01620 4.02220 4.11957 4.17508 4.22043 4.38716 4.40688 4.44815 4.51484 4.57372 4.59032 4.59505 4.61685 4.71805 4.74694 4.75005 4.78696 4.81093 4.85950 4.87565 4.96629 4.99372 5.01598 5.05360 5.05643 5.12571 5.14940 5.25331 5.29580 5.41506 5.42755 5.44834 5.51783 5.55000 5.57205 5.66130 5.70700 5.99175 6.05717 6.35694 6.76340 7.30689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.134 3.866 10 H 0.095 0.905 11 C -0.122 4.122 12 C -0.066 4.066 13 H 0.106 0.894 14 C -0.067 4.067 15 C -0.106 4.106 16 C -0.042 4.042 17 C -0.043 4.043 18 C -0.118 4.118 19 C -0.078 4.078 20 O -0.549 6.549 21 Si 0.770 3.230 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.142 4.142 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.391 0.609 45 H -0.300 1.300 46 H -0.285 1.285 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.145 0.855 50 H 0.130 0.870 51 H 0.117 0.883 52 H 0.134 0.866 53 H 0.137 0.863 54 H 0.065 0.935 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 3.235 4.155 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.342 5.342 9 C 0.030 3.970 10 H 0.113 0.887 11 C -0.159 4.159 12 C -0.084 4.084 13 H 0.124 0.876 14 C -0.067 4.067 15 C -0.124 4.124 16 C -0.042 4.042 17 C -0.043 4.043 18 C -0.118 4.118 19 C -0.188 4.188 20 O -0.357 6.357 21 Si 0.676 3.324 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.139 4.139 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.240 0.760 45 H -0.228 1.228 46 H -0.212 1.212 47 H 0.168 0.832 48 H 0.169 0.831 49 H 0.162 0.838 50 H 0.148 0.852 51 H 0.135 0.865 52 H 0.152 0.848 53 H 0.155 0.845 54 H 0.084 0.916 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.821 2.042 3.599 5.008 hybrid contribution 0.256 -0.326 -0.351 0.543 sum 3.077 1.716 3.248 4.792 Atomic orbital electron populations 1.22477 0.94087 1.03678 1.03510 1.22362 0.94435 0.92609 0.81491 1.21894 1.02491 0.90817 1.04263 1.22473 1.01668 1.02242 0.97340 1.86309 1.71562 1.23176 1.47321 1.18306 0.78567 0.80799 0.82351 1.90907 1.42113 1.70905 1.44403 1.44366 1.54745 1.12036 1.23092 1.21841 0.96791 0.79241 0.99159 0.88713 1.23393 0.98674 1.01121 0.92755 1.21579 0.97309 0.96985 0.92521 0.87555 1.19703 0.97709 0.95336 0.93979 1.21147 1.00384 0.98516 0.92373 1.18758 0.98545 0.94530 0.92374 1.18789 0.93577 1.00201 0.91714 1.20441 0.95806 1.02126 0.93443 1.25333 0.91623 0.92122 1.09682 1.86515 1.77622 1.22745 1.48798 0.93961 0.75430 0.84446 0.78524 1.21197 0.96991 1.00026 0.95252 1.21544 0.92850 0.98354 1.00610 1.21462 1.01067 0.98817 0.92135 1.21427 0.94398 0.99583 0.98062 1.21238 0.99395 0.97185 0.96806 1.21271 0.99855 0.99849 0.93124 1.21239 0.99199 0.93221 1.00280 1.23590 0.96588 1.03030 0.94892 0.91989 0.89423 0.91827 0.91120 0.88283 0.91185 0.91801 0.89440 0.91882 0.74621 0.87498 0.89283 0.85436 0.88173 0.75979 1.22822 1.21189 0.83241 0.83108 0.83756 0.85213 0.86520 0.84780 0.84527 0.91619 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 2 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.25 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 5 O -0.37 -2.19 9.94 -55.43 -0.55 -2.74 16 6 C 0.65 4.70 8.06 129.79 1.05 5.75 16 7 O -0.59 -7.51 11.48 19.80 0.23 -7.28 16 8 N -0.68 -0.70 5.27 -567.61 -2.99 -3.69 16 9 C 0.13 -0.04 4.32 45.52 0.20 0.16 16 10 H 0.09 0.29 7.47 -2.39 -0.02 0.27 16 11 C -0.12 0.49 7.29 31.12 0.23 0.71 16 12 C -0.07 0.17 3.85 -11.01 -0.04 0.12 16 13 H 0.11 -0.44 8.09 -2.38 -0.02 -0.45 16 14 C -0.07 -0.08 5.28 -19.90 -0.11 -0.18 16 15 C -0.11 -0.31 9.28 22.48 0.21 -0.10 16 16 C -0.04 -0.19 4.86 -20.04 -0.10 -0.29 16 17 C -0.04 -0.15 5.40 -20.04 -0.11 -0.25 16 18 C -0.12 -0.20 5.26 -19.65 -0.10 -0.30 16 19 C -0.08 -0.16 2.08 71.24 0.15 -0.01 16 20 O -0.55 -1.61 12.83 -148.98 -1.91 -3.52 16 21 Si 0.77 -0.45 29.92 68.60 2.05 1.60 16 22 C -0.12 0.23 8.65 22.24 0.19 0.42 16 23 C -0.12 0.34 10.04 22.31 0.22 0.56 16 24 C -0.12 0.20 10.03 22.24 0.22 0.43 16 25 C -0.12 -0.12 9.63 22.48 0.22 0.09 16 26 C -0.13 -0.62 7.95 22.48 0.18 -0.45 16 27 C -0.12 -0.38 10.03 22.24 0.22 -0.16 16 28 C -0.12 -0.19 8.62 22.31 0.19 0.01 16 29 C -0.14 0.10 7.25 31.12 0.23 0.32 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 33 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.10 -0.51 8.14 -2.38 -0.02 -0.52 16 35 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 37 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.42 -1.44 8.81 -92.71 -0.82 -2.26 16 40 H 0.11 -0.49 7.73 -2.39 -0.02 -0.50 16 41 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.13 0.08 8.05 -2.91 -0.02 0.06 16 43 H 0.10 0.48 4.94 -2.39 -0.01 0.47 16 44 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 45 H -0.30 -2.12 7.11 99.48 0.71 -1.42 16 46 H -0.29 -1.18 7.11 99.48 0.71 -0.47 16 47 H 0.15 -1.06 5.12 -2.91 -0.01 -1.07 16 48 H 0.15 -1.19 8.06 -2.91 -0.02 -1.21 16 49 H 0.14 -0.85 8.06 -2.91 -0.02 -0.87 16 50 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 51 H 0.12 0.46 7.02 -2.91 -0.02 0.44 16 52 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 53 H 0.14 -0.26 6.64 -2.91 -0.02 -0.28 16 54 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 55 H 0.10 -0.13 6.30 -2.39 -0.02 -0.14 16 Total: 0.00 -18.95 434.40 1.20 -17.75 By element: Atomic # 1 Polarization: -9.61 SS G_CDS: -0.50 Total: -10.11 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.88 Total: 8.00 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -2.99 Total: -3.69 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -2.23 Total: -13.55 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.05 Total: 1.60 kcal Total: -18.95 1.20 -17.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_14315990.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.002 kcal (2) G-P(sol) polarization free energy of solvation -18.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds