Wall clock time and date at job start Mon Mar 8 2021 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40072 * 126.13678 * 2 1 4 4 C 1.30892 * 108.51305 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.70650 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46699 * 179.97438 * 5 4 3 7 7 Si 1.63101 * 113.99357 * 180.02562 * 6 5 4 8 8 C 1.86299 * 109.47115 * 299.99439 * 7 6 5 9 9 C 1.86298 * 109.47251 * 59.99915 * 7 6 5 10 10 C 1.86302 * 109.46830 * 180.02562 * 7 6 5 11 11 C 1.52996 * 109.47468 * 59.99751 * 10 7 6 12 12 C 1.53002 * 109.47099 * 179.97438 * 10 7 6 13 13 C 1.52999 * 109.47063 * 299.99556 * 10 7 6 14 14 C 1.39503 * 108.58745 * 359.73883 * 4 3 2 15 15 C 1.36285 * 126.13937 * 179.97438 * 2 1 3 16 16 C 1.47976 * 126.34375 * 0.02562 * 15 2 1 17 17 C 1.39484 * 120.13731 * 309.05263 * 16 15 2 18 18 C 1.37998 * 119.85829 * 180.24672 * 17 16 15 19 19 C 1.38317 * 120.13812 * 359.75098 * 18 17 16 20 20 C 1.38357 * 120.28245 * 359.97410 * 19 18 17 21 21 C 1.37961 * 120.13654 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.06935 * 179.97438 * 21 20 19 23 23 O 1.42892 * 109.47320 * 104.69512 * 22 21 20 24 24 Si 1.86296 * 109.47232 * 344.68917 * 22 21 20 25 25 H 1.48503 * 109.47158 * 180.02562 * 24 22 21 26 26 H 1.48495 * 109.47479 * 300.00580 * 24 22 21 27 27 H 1.48500 * 109.46990 * 60.00354 * 24 22 21 28 28 H 1.08997 * 109.47392 * 267.94594 * 1 2 3 29 29 H 1.09004 * 109.47135 * 27.94941 * 1 2 3 30 30 H 1.09005 * 109.46500 * 147.94521 * 1 2 3 31 31 H 1.08996 * 109.46778 * 299.97101 * 5 4 3 32 32 H 1.08997 * 109.46943 * 59.97444 * 5 4 3 33 33 H 1.09007 * 109.46601 * 60.00667 * 8 7 6 34 34 H 1.08996 * 109.47077 * 180.02562 * 8 7 6 35 35 H 1.08990 * 109.47623 * 300.00529 * 8 7 6 36 36 H 1.08997 * 109.47086 * 60.00214 * 9 7 6 37 37 H 1.09010 * 109.46948 * 179.97438 * 9 7 6 38 38 H 1.08994 * 109.47282 * 299.99811 * 9 7 6 39 39 H 1.09003 * 109.47134 * 60.00005 * 11 10 7 40 40 H 1.08994 * 109.47413 * 180.02562 * 11 10 7 41 41 H 1.08996 * 109.47176 * 300.00084 * 11 10 7 42 42 H 1.09006 * 109.47011 * 59.99632 * 12 10 7 43 43 H 1.09003 * 109.46911 * 179.97438 * 12 10 7 44 44 H 1.08997 * 109.46848 * 300.00070 * 12 10 7 45 45 H 1.09001 * 109.47175 * 59.99959 * 13 10 7 46 46 H 1.09003 * 109.47376 * 179.97438 * 13 10 7 47 47 H 1.09004 * 109.47630 * 300.00168 * 13 10 7 48 48 H 1.08007 * 126.06832 * 180.30507 * 14 4 3 49 49 H 1.08007 * 120.06737 * 359.97356 * 17 16 15 50 50 H 1.08002 * 119.93068 * 179.76641 * 18 17 16 51 51 H 1.08004 * 119.85880 * 180.02562 * 19 18 17 52 52 H 1.07997 * 119.93663 * 180.02562 * 20 19 18 53 53 H 1.09002 * 109.46812 * 224.69590 * 22 21 20 54 54 H 0.96708 * 114.00300 * 59.99111 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1312 0.0000 4 6 3.5385 0.7349 0.0006 5 6 4.7473 1.6349 0.0013 6 8 5.9339 0.8387 0.0024 7 14 7.3149 1.7064 0.0039 8 6 7.3751 2.7806 -1.5171 9 6 7.3720 2.7802 1.5253 10 6 8.7752 0.5495 0.0044 11 6 8.7281 -0.3319 -1.2453 12 6 10.0707 1.3635 0.0052 13 6 8.7261 -0.3331 1.2532 14 6 3.5620 -0.6599 0.0070 15 6 2.2687 -1.1006 0.0005 16 6 1.8234 -2.5118 0.0006 17 6 0.8875 -2.9507 0.9371 18 6 0.4800 -4.2691 0.9352 19 6 0.9937 -5.1535 0.0040 20 6 1.9181 -4.7230 -0.9312 21 6 2.3335 -3.4074 -0.9397 22 6 3.3408 -2.9403 -1.9587 23 8 2.6780 -2.1771 -2.9686 24 14 4.1665 -4.4172 -2.7380 25 1 5.1596 -3.9569 -3.7416 26 1 4.8554 -5.2104 -1.6885 27 1 3.1432 -5.2618 -3.4049 28 1 -0.3634 -0.0368 1.0270 29 1 -0.3633 0.9078 -0.4817 30 1 -0.3632 -0.8711 -0.5455 31 1 4.7325 2.2638 -0.8888 32 1 4.7311 2.2642 0.8911 33 1 6.5207 3.4575 -1.5178 34 1 8.2982 3.3601 -1.5162 35 1 7.3417 2.1524 -2.4071 36 1 7.3368 2.1517 2.4151 37 1 8.2952 3.3598 1.5265 38 1 6.5177 3.4570 1.5245 39 1 8.7630 0.2969 -2.1349 40 1 9.5821 -1.0091 -1.2447 41 1 7.8052 -0.9118 -1.2463 42 1 10.1045 1.9917 0.8954 43 1 10.9251 0.6865 0.0060 44 1 10.1054 1.9920 -0.8846 45 1 7.8032 -0.9130 1.2522 46 1 9.5802 -1.0104 1.2533 47 1 8.7597 0.2948 2.1436 48 1 4.4456 -1.2810 0.0136 49 1 0.4859 -2.2611 1.6650 50 1 -0.2418 -4.6111 1.6622 51 1 0.6713 -6.1843 0.0064 52 1 2.3152 -5.4181 -1.6560 53 1 4.0920 -2.3204 -1.4692 54 1 2.2250 -1.3910 -2.6339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_15493832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:46 Heat of formation + Delta-G solvation = -20.634143 kcal Electronic energy + Delta-G solvation = -31742.828589 eV Core-core repulsion = 27804.807383 eV Total energy + Delta-G solvation = -3938.021206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.194 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42336 -40.33366 -38.01815 -37.57223 -36.78780 -34.46524 -33.33133 -32.54001 -30.05960 -29.42389 -29.02103 -28.89663 -27.79200 -27.33223 -27.00288 -25.88853 -24.16342 -22.73935 -21.35023 -20.71068 -20.32246 -18.70786 -18.00456 -17.68703 -17.15070 -16.86255 -16.58443 -16.13412 -16.00303 -15.73482 -15.47095 -15.37149 -15.27220 -14.85477 -14.80919 -14.67089 -14.49890 -14.33157 -13.94195 -13.72608 -13.52093 -13.41576 -13.39681 -13.30645 -13.15036 -13.13817 -12.90341 -12.88132 -12.84744 -12.48832 -12.35628 -12.22877 -11.98611 -11.88048 -11.75007 -11.64631 -11.57269 -11.39153 -11.30728 -11.00709 -10.55215 -10.30558 -10.02439 -9.94462 -9.75694 -9.30477 -0.10934 0.25085 0.85734 1.15824 1.26218 1.46870 1.49627 1.66367 1.71364 1.82357 1.93109 2.15299 2.48448 2.65346 3.28588 3.50477 3.60400 3.75517 3.90231 3.99240 4.11229 4.16687 4.17191 4.24593 4.27338 4.33177 4.41706 4.44035 4.47646 4.52488 4.54543 4.61793 4.64199 4.77689 4.78969 4.81814 4.82583 4.87087 4.88280 4.88477 4.90997 5.02412 5.05256 5.14225 5.14598 5.22881 5.32971 5.34410 5.39177 5.43666 5.45086 5.46355 5.51695 5.59300 5.65233 5.68403 5.85681 5.98127 6.41870 6.64240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.366 5.366 3 N -0.309 5.309 4 C 0.061 3.939 5 C 0.164 3.836 6 O -0.631 6.631 7 Si 1.323 2.677 8 C -0.520 4.520 9 C -0.519 4.519 10 C -0.379 4.379 11 C -0.139 4.139 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.236 4.236 15 C 0.111 3.889 16 C -0.036 4.036 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.093 4.093 22 C -0.109 4.109 23 O -0.543 6.543 24 Si 1.029 2.971 25 H -0.273 1.273 26 H -0.235 1.235 27 H -0.256 1.256 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.158 0.842 49 H 0.135 0.865 50 H 0.153 0.847 51 H 0.152 0.848 52 H 0.135 0.865 53 H 0.090 0.910 54 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -1.406 2.266 3.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.149 5.149 3 N -0.134 5.134 4 C -0.103 4.103 5 C 0.087 3.913 6 O -0.589 6.589 7 Si 1.453 2.547 8 C -0.622 4.622 9 C -0.621 4.621 10 C -0.421 4.421 11 C -0.196 4.196 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.265 4.265 15 C -0.016 4.016 16 C -0.037 4.037 17 C -0.120 4.120 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.152 4.152 21 C -0.095 4.095 22 C -0.216 4.216 23 O -0.349 6.349 24 Si 0.849 3.151 25 H -0.198 1.198 26 H -0.158 1.158 27 H -0.180 1.180 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.175 0.825 49 H 0.153 0.847 50 H 0.171 0.829 51 H 0.170 0.830 52 H 0.152 0.848 53 H 0.108 0.892 54 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.421 -1.805 1.524 3.382 hybrid contribution 0.372 0.697 0.625 1.008 sum -2.049 -1.107 2.149 3.169 Atomic orbital electron populations 1.22178 0.72394 1.05613 1.04656 1.49005 1.07227 1.02131 1.56541 1.77213 1.01313 1.08308 1.26555 1.22286 0.93015 0.94867 1.00116 1.20114 0.79504 0.88734 1.02978 1.85238 1.27780 1.54119 1.91737 0.76104 0.55264 0.58749 0.64543 1.27122 1.05044 1.11630 1.18374 1.27112 1.05051 1.11605 1.18337 1.25869 1.11743 1.06678 0.97860 1.21563 1.01845 0.99517 0.96687 1.21606 0.96204 0.99720 1.02285 1.21546 1.01780 0.99453 0.96649 1.21347 0.95995 0.94300 1.14854 1.19709 0.90882 0.87718 1.03261 1.17874 0.99380 0.88884 0.97611 1.21427 0.95917 0.97159 0.97465 1.21450 0.99975 0.92542 0.99087 1.21596 0.95218 1.01344 0.93747 1.21278 0.98910 0.94864 1.00134 1.20307 0.98793 0.94099 0.96264 1.25709 0.97246 1.05820 0.92805 1.86689 1.72384 1.41586 1.34232 0.84284 0.77826 0.73813 0.79208 1.19786 1.15779 1.18040 0.89249 0.88377 0.88316 0.89363 0.89422 0.91044 0.90252 0.91160 0.91131 0.90237 0.91044 0.92173 0.93254 0.92313 0.91805 0.93093 0.91830 0.92373 0.93306 0.92166 0.82488 0.84718 0.82904 0.83010 0.84759 0.89205 0.78849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.28 10.60 127.77 1.35 1.07 16 2 N -0.37 -1.44 4.05 -356.89 -1.45 -2.89 16 3 N -0.31 -2.35 12.56 -47.58 -0.60 -2.95 16 4 C 0.06 0.38 7.16 43.00 0.31 0.68 16 5 C 0.16 0.23 5.74 71.24 0.41 0.64 16 6 O -0.63 -0.67 7.87 -148.98 -1.17 -1.84 16 7 Si 1.32 -3.02 8.45 68.60 0.58 -2.44 16 8 C -0.52 0.80 8.50 113.37 0.96 1.76 16 9 C -0.52 0.92 8.50 113.37 0.96 1.88 16 10 C -0.38 0.25 0.53 -10.79 -0.01 0.24 16 11 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 12 C -0.14 0.20 7.85 71.98 0.56 0.76 16 13 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 14 C -0.24 -1.37 8.38 22.20 0.19 -1.18 16 15 C 0.11 0.47 5.00 40.66 0.20 0.67 16 16 C -0.04 -0.08 5.35 -20.09 -0.11 -0.19 16 17 C -0.10 0.11 9.00 22.51 0.20 0.31 16 18 C -0.11 0.38 10.03 22.23 0.22 0.60 16 19 C -0.10 0.25 10.04 22.32 0.22 0.48 16 20 C -0.13 -0.10 8.65 22.23 0.19 0.09 16 21 C -0.09 -0.26 5.29 -19.62 -0.10 -0.37 16 22 C -0.11 -0.39 2.10 71.24 0.15 -0.24 16 23 O -0.54 -3.40 12.65 -148.98 -1.89 -5.28 16 24 Si 1.03 2.57 25.76 68.60 1.77 4.34 16 25 H -0.27 -1.47 7.11 99.48 0.71 -0.76 16 26 H -0.24 -0.13 7.11 99.48 0.71 0.58 16 27 H -0.26 -0.75 6.72 99.48 0.67 -0.08 16 28 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.10 -0.40 8.14 -2.38 -0.02 -0.41 16 30 H 0.10 -0.53 7.72 -2.38 -0.02 -0.55 16 31 H 0.09 -0.12 7.21 -2.39 -0.02 -0.14 16 32 H 0.09 -0.13 7.21 -2.39 -0.02 -0.14 16 33 H 0.07 -0.15 7.48 -2.38 -0.02 -0.17 16 34 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 35 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 36 H 0.07 -0.07 7.79 -2.39 -0.02 -0.08 16 37 H 0.08 -0.21 7.79 -2.38 -0.02 -0.22 16 38 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 39 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 40 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 42 H 0.06 -0.19 7.79 -2.38 -0.02 -0.20 16 43 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 45 H 0.06 0.04 7.97 -2.39 -0.02 0.02 16 46 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.06 -0.06 7.80 -2.38 -0.02 -0.08 16 48 H 0.16 0.76 6.76 -2.91 -0.02 0.74 16 49 H 0.13 -0.49 7.91 -2.91 -0.02 -0.51 16 50 H 0.15 -1.25 8.06 -2.91 -0.02 -1.27 16 51 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 52 H 0.13 -0.13 4.89 -2.91 -0.01 -0.14 16 53 H 0.09 0.26 5.00 -2.39 -0.01 0.25 16 54 H 0.36 1.60 8.08 -74.05 -0.60 1.00 16 Total: 0.00 -12.40 425.56 5.10 -7.30 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: 1.00 Total: -4.49 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.86 Total: 8.25 kcal Atomic # 7 Polarization: -3.79 SS G_CDS: -2.04 Total: -5.84 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -3.06 Total: -7.12 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.35 Total: 1.90 kcal Total: -12.40 5.10 -7.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_15493832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.336 kcal (2) G-P(sol) polarization free energy of solvation -12.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds