Wall clock time and date at job start Mon Mar 8 2021 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47468 * 2 1 4 4 C 1.53005 * 109.47053 * 239.99521 * 2 1 3 5 5 Si 1.86305 * 109.46724 * 119.99866 * 2 1 3 6 6 C 1.86295 * 109.47000 * 299.99803 * 5 2 1 7 7 C 1.86304 * 109.46873 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47086 * 59.99993 * 5 2 1 9 9 C 1.42896 * 113.99661 * 179.97438 * 8 5 2 10 10 C 1.50707 * 109.47027 * 179.97438 * 9 8 5 11 11 C 1.33051 * 122.54171 * 5.09406 * 10 9 8 12 12 S 1.75810 * 109.92973 * 180.26570 * 11 10 9 13 13 C 1.75850 * 91.15094 * 359.72541 * 12 11 10 14 14 C 1.34575 * 109.54342 * 0.02562 * 13 12 11 15 15 C 1.48371 * 122.76874 * 179.97438 * 14 13 12 16 16 C 1.39335 * 120.11946 * 255.69146 * 15 14 13 17 17 C 1.38037 * 119.87220 * 179.97438 * 16 15 14 18 18 C 1.38304 * 120.12291 * 0.02562 * 17 16 15 19 19 C 1.38345 * 120.24802 * 359.97438 * 18 17 16 20 20 C 1.37993 * 120.12506 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.06366 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47025 * 254.94820 * 21 20 19 23 23 Si 1.86299 * 109.47421 * 14.94856 * 21 20 19 24 24 H 1.48501 * 109.47095 * 59.99825 * 23 21 20 25 25 H 1.48495 * 109.47412 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 300.00520 * 23 21 20 27 27 H 1.08997 * 109.47119 * 300.00305 * 1 2 3 28 28 H 1.09004 * 109.46598 * 60.00265 * 1 2 3 29 29 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47404 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46995 * 299.99491 * 3 2 1 32 32 H 1.08997 * 109.47200 * 59.99744 * 3 2 1 33 33 H 1.08997 * 109.46937 * 300.00190 * 4 2 1 34 34 H 1.08999 * 109.46667 * 60.00228 * 4 2 1 35 35 H 1.08995 * 109.47100 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47115 * 180.02562 * 6 5 2 37 37 H 1.09004 * 109.47342 * 299.99844 * 6 5 2 38 38 H 1.08995 * 109.47268 * 60.00022 * 6 5 2 39 39 H 1.08997 * 109.47322 * 300.00044 * 7 5 2 40 40 H 1.09002 * 109.46745 * 60.00003 * 7 5 2 41 41 H 1.08999 * 109.47147 * 179.97438 * 7 5 2 42 42 H 1.09005 * 109.47639 * 60.00036 * 9 8 5 43 43 H 1.09001 * 109.47596 * 300.00081 * 9 8 5 44 44 H 1.08004 * 125.03365 * 359.97438 * 11 10 9 45 45 H 1.08001 * 125.23042 * 180.02562 * 13 12 11 46 46 H 1.07999 * 120.06508 * 0.02562 * 16 15 14 47 47 H 1.07995 * 119.94076 * 180.02562 * 17 16 15 48 48 H 1.07997 * 119.87394 * 179.72074 * 18 17 16 49 49 H 1.08000 * 119.93926 * 179.97438 * 19 18 17 50 50 H 1.08994 * 109.47111 * 134.94822 * 21 20 19 51 51 H 0.96701 * 114.00458 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0422 7 6 4.0140 -0.8789 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1816 2.6515 10 6 1.4718 -4.5780 2.5489 11 6 0.7922 -5.0010 1.4861 12 16 0.2931 -6.6705 1.7195 13 6 1.0644 -6.7175 3.2991 14 6 1.6327 -5.5255 3.5582 15 6 2.3650 -5.2416 4.8170 16 6 1.7725 -4.4651 5.8107 17 6 2.4582 -4.2047 6.9801 18 6 3.7312 -4.7124 7.1660 19 6 4.3243 -5.4839 6.1827 20 6 3.6481 -5.7507 5.0098 21 6 4.2952 -6.5918 3.9398 22 8 4.7215 -5.7510 2.8659 23 14 5.7680 -7.4808 4.6547 24 1 5.3250 -8.3545 5.7708 25 1 6.4053 -8.3101 3.6006 26 1 6.7473 -6.4869 5.1630 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 1.8935 -0.5135 3.9323 37 1 1.8933 1.0278 3.0423 38 1 0.4400 0.0002 3.0422 39 1 4.3770 -1.3930 0.6310 40 1 4.3776 0.1486 1.5206 41 1 4.3773 -1.3924 2.4111 42 1 1.6652 -2.7117 3.5652 43 1 3.1181 -3.2255 2.6747 44 1 0.5751 -4.4054 0.6117 45 1 1.0797 -7.5717 3.9598 46 1 0.7784 -4.0685 5.6667 47 1 1.9999 -3.6033 7.7512 48 1 4.2658 -4.5023 8.0806 49 1 5.3187 -5.8775 6.3330 50 1 3.5763 -7.3213 3.5668 51 1 5.1483 -6.2262 2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651794_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:34:03 Heat of formation + Delta-G solvation = -74.543335 kcal Electronic energy + Delta-G solvation = -29557.390785 eV Core-core repulsion = 25864.347449 eV Total energy + Delta-G solvation = -3693.043337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03031 -39.08126 -37.50720 -37.09006 -36.81478 -32.81982 -32.34985 -30.24387 -29.39256 -29.05135 -27.84240 -27.60540 -27.35503 -26.60885 -24.35103 -22.94063 -21.93467 -20.41409 -19.43138 -18.85310 -18.39220 -17.48790 -17.16467 -16.81798 -16.49897 -16.17386 -15.89781 -15.77564 -15.27919 -14.98845 -14.85434 -14.75068 -14.49755 -14.35244 -14.04051 -13.92201 -13.70818 -13.58444 -13.40928 -13.35993 -13.29897 -13.22185 -13.16629 -12.93333 -12.90970 -12.87564 -12.39792 -12.34780 -12.17367 -11.95074 -11.85707 -11.80407 -11.68323 -11.56277 -11.56166 -11.24857 -10.35359 -10.27236 -10.04679 -9.87326 -9.81126 -9.43734 -9.08492 0.11799 0.29777 0.36858 0.83711 1.12780 1.18066 1.41747 1.46752 1.47789 1.75324 1.78895 1.87934 2.10352 2.48970 2.67459 3.44081 3.77701 3.90197 3.95753 4.10144 4.13055 4.13510 4.13938 4.27712 4.31693 4.44691 4.48597 4.50467 4.59358 4.62074 4.71578 4.72713 4.77894 4.79519 4.80942 4.83039 4.86968 4.88054 4.99155 5.01209 5.05533 5.11569 5.11867 5.21067 5.29944 5.35753 5.36955 5.44021 5.48282 5.49677 5.55655 5.56976 5.60452 5.65008 5.79863 5.96604 6.60811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.133 4.133 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.624 6.624 9 C 0.150 3.850 10 C -0.090 4.090 11 C -0.180 4.180 12 S 0.098 5.902 13 C -0.209 4.209 14 C -0.048 4.048 15 C -0.007 4.007 16 C -0.106 4.106 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.060 4.060 21 C -0.079 4.079 22 O -0.537 6.537 23 Si 0.939 3.061 24 H -0.248 1.248 25 H -0.256 1.256 26 H -0.247 1.247 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.174 0.826 45 H 0.165 0.835 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.075 0.925 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -0.701 1.105 1.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.612 4.612 8 O -0.583 6.583 9 C 0.072 3.928 10 C -0.102 4.102 11 C -0.315 4.315 12 S 0.364 5.636 13 C -0.344 4.344 14 C -0.061 4.061 15 C -0.010 4.010 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.189 4.189 22 O -0.343 6.343 23 Si 0.762 3.238 24 H -0.172 1.172 25 H -0.180 1.180 26 H -0.171 1.171 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.192 0.808 45 H 0.182 0.818 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.142 0.858 50 H 0.093 0.907 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.043 -1.954 0.781 2.104 hybrid contribution 0.871 1.243 0.462 1.586 sum 0.914 -0.711 1.243 1.699 Atomic orbital electron populations 1.21510 0.93847 1.01977 1.01751 1.25772 1.00628 1.02605 1.12730 1.21555 1.00803 0.94934 1.02111 1.21505 1.00649 1.00186 0.96716 0.76685 0.63106 0.53345 0.64903 1.27037 1.06959 1.09444 1.17904 1.27025 1.25010 1.04551 1.04660 1.85275 1.79399 1.45946 1.47726 1.20471 0.98148 0.87677 0.86510 1.18618 1.01561 0.96090 0.93898 1.25295 1.05045 0.97447 1.03692 1.84377 1.55122 1.10639 1.13467 1.25638 1.06364 1.01455 1.00988 1.17368 1.00991 0.93097 0.94656 1.18251 0.92855 0.97409 0.92439 1.21272 1.00083 0.98001 0.93117 1.21170 0.94847 0.99595 0.97368 1.21172 0.95466 0.97256 0.99003 1.21041 0.99686 0.99397 0.93842 1.19274 0.93650 0.98972 0.94094 1.24700 1.05838 0.97159 0.91235 1.86505 1.80700 1.36028 1.31053 0.85869 0.78102 0.79023 0.80809 1.17183 1.17963 1.17058 0.92718 0.92842 0.92181 0.92505 0.92525 0.92531 0.92198 0.92849 0.92682 0.91430 0.90762 0.90890 0.90851 0.90886 0.91315 0.91834 0.90658 0.80824 0.81796 0.85476 0.85416 0.85454 0.85790 0.90733 0.77498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 2 C -0.37 -0.01 0.53 -90.62 -0.05 -0.06 16 3 C -0.14 0.03 7.85 37.15 0.29 0.33 16 4 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 5 Si 1.29 -0.44 8.45 -169.99 -1.44 -1.88 16 6 C -0.51 0.01 8.50 101.05 0.86 0.87 16 7 C -0.51 -0.17 8.50 101.05 0.86 0.69 16 8 O -0.62 -0.65 7.43 -35.23 -0.26 -0.91 16 9 C 0.15 0.21 4.96 36.01 0.18 0.38 16 10 C -0.09 -0.18 5.81 -106.00 -0.62 -0.80 16 11 C -0.18 -0.30 10.41 28.93 0.30 0.00 16 12 S 0.10 0.08 23.32 -107.50 -2.51 -2.42 16 13 C -0.21 -0.19 10.00 29.44 0.29 0.10 16 14 C -0.05 -0.08 4.25 -106.60 -0.45 -0.53 16 15 C -0.01 -0.01 4.86 -104.89 -0.51 -0.52 16 16 C -0.11 -0.07 9.56 -39.25 -0.38 -0.45 16 17 C -0.11 0.01 10.03 -39.63 -0.40 -0.39 16 18 C -0.11 -0.01 10.04 -39.52 -0.40 -0.41 16 19 C -0.12 -0.12 8.65 -39.63 -0.34 -0.46 16 20 C -0.06 -0.09 5.32 -104.29 -0.55 -0.64 16 21 C -0.08 -0.01 2.11 36.00 0.08 0.06 16 22 O -0.54 -0.23 12.80 -35.23 -0.45 -0.68 16 23 Si 0.94 -0.27 25.49 -169.99 -4.33 -4.60 16 24 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 25 H -0.26 0.02 7.11 56.52 0.40 0.42 16 26 H -0.25 -0.16 6.73 56.52 0.38 0.22 16 27 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 28 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 30 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 31 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 33 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 34 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 35 H 0.05 -0.01 7.79 -51.93 -0.40 -0.41 16 36 H 0.07 -0.01 7.48 -51.93 -0.39 -0.39 16 37 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 38 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 39 H 0.07 0.04 7.79 -51.93 -0.40 -0.36 16 40 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 41 H 0.07 0.04 7.48 -51.93 -0.39 -0.35 16 42 H 0.06 0.03 7.00 -51.93 -0.36 -0.33 16 43 H 0.08 0.11 7.21 -51.93 -0.37 -0.26 16 44 H 0.17 0.20 7.49 -52.48 -0.39 -0.20 16 45 H 0.16 -0.10 8.06 -52.49 -0.42 -0.52 16 46 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 47 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 48 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 49 H 0.12 -0.01 4.89 -52.49 -0.26 -0.26 16 50 H 0.07 -0.05 6.65 -51.93 -0.35 -0.39 16 51 H 0.38 -1.27 8.74 45.56 0.40 -0.88 16 LS Contribution 417.40 15.07 6.29 6.29 Total: 0.00 -4.40 417.40 -10.91 -15.31 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -7.95 Total: -9.78 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.25 Total: -1.32 kcal Atomic # 8 Polarization: -0.88 SS G_CDS: -0.71 Total: -1.59 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.77 Total: -6.48 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.51 Total: -2.42 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -4.40 -10.91 -15.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.236 kcal (2) G-P(sol) polarization free energy of solvation -4.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds