Wall clock time and date at job start Mon Mar 8 2021 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47468 * 2 1 4 4 C 1.53005 * 109.47053 * 239.99521 * 2 1 3 5 5 Si 1.86305 * 109.46724 * 119.99866 * 2 1 3 6 6 C 1.86295 * 109.47000 * 299.99803 * 5 2 1 7 7 C 1.86304 * 109.46873 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47086 * 59.99993 * 5 2 1 9 9 C 1.42896 * 113.99661 * 179.97438 * 8 5 2 10 10 C 1.50707 * 109.47027 * 179.97438 * 9 8 5 11 11 C 1.33051 * 122.54171 * 5.09406 * 10 9 8 12 12 S 1.75810 * 109.92973 * 180.26570 * 11 10 9 13 13 C 1.75850 * 91.15094 * 359.72541 * 12 11 10 14 14 C 1.34575 * 109.54342 * 0.02562 * 13 12 11 15 15 C 1.48371 * 122.76874 * 179.97438 * 14 13 12 16 16 C 1.39335 * 120.11946 * 255.69146 * 15 14 13 17 17 C 1.38037 * 119.87220 * 179.97438 * 16 15 14 18 18 C 1.38304 * 120.12291 * 0.02562 * 17 16 15 19 19 C 1.38345 * 120.24802 * 359.97438 * 18 17 16 20 20 C 1.37993 * 120.12506 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.06366 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47025 * 254.94820 * 21 20 19 23 23 Si 1.86299 * 109.47421 * 14.94856 * 21 20 19 24 24 H 1.48501 * 109.47095 * 59.99825 * 23 21 20 25 25 H 1.48495 * 109.47412 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 300.00520 * 23 21 20 27 27 H 1.08997 * 109.47119 * 300.00305 * 1 2 3 28 28 H 1.09004 * 109.46598 * 60.00265 * 1 2 3 29 29 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47404 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46995 * 299.99491 * 3 2 1 32 32 H 1.08997 * 109.47200 * 59.99744 * 3 2 1 33 33 H 1.08997 * 109.46937 * 300.00190 * 4 2 1 34 34 H 1.08999 * 109.46667 * 60.00228 * 4 2 1 35 35 H 1.08995 * 109.47100 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47115 * 180.02562 * 6 5 2 37 37 H 1.09004 * 109.47342 * 299.99844 * 6 5 2 38 38 H 1.08995 * 109.47268 * 60.00022 * 6 5 2 39 39 H 1.08997 * 109.47322 * 300.00044 * 7 5 2 40 40 H 1.09002 * 109.46745 * 60.00003 * 7 5 2 41 41 H 1.08999 * 109.47147 * 179.97438 * 7 5 2 42 42 H 1.09005 * 109.47639 * 60.00036 * 9 8 5 43 43 H 1.09001 * 109.47596 * 300.00081 * 9 8 5 44 44 H 1.08004 * 125.03365 * 359.97438 * 11 10 9 45 45 H 1.08001 * 125.23042 * 180.02562 * 13 12 11 46 46 H 1.07999 * 120.06508 * 0.02562 * 16 15 14 47 47 H 1.07995 * 119.94076 * 180.02562 * 17 16 15 48 48 H 1.07997 * 119.87394 * 179.72074 * 18 17 16 49 49 H 1.08000 * 119.93926 * 179.97438 * 19 18 17 50 50 H 1.08994 * 109.47111 * 134.94822 * 21 20 19 51 51 H 0.96701 * 114.00458 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0422 7 6 4.0140 -0.8789 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1816 2.6515 10 6 1.4718 -4.5780 2.5489 11 6 0.7922 -5.0010 1.4861 12 16 0.2931 -6.6705 1.7195 13 6 1.0644 -6.7175 3.2991 14 6 1.6327 -5.5255 3.5582 15 6 2.3650 -5.2416 4.8170 16 6 1.7725 -4.4651 5.8107 17 6 2.4582 -4.2047 6.9801 18 6 3.7312 -4.7124 7.1660 19 6 4.3243 -5.4839 6.1827 20 6 3.6481 -5.7507 5.0098 21 6 4.2952 -6.5918 3.9398 22 8 4.7215 -5.7510 2.8659 23 14 5.7680 -7.4808 4.6547 24 1 5.3250 -8.3545 5.7708 25 1 6.4053 -8.3101 3.6006 26 1 6.7473 -6.4869 5.1630 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 1.8935 -0.5135 3.9323 37 1 1.8933 1.0278 3.0423 38 1 0.4400 0.0002 3.0422 39 1 4.3770 -1.3930 0.6310 40 1 4.3776 0.1486 1.5206 41 1 4.3773 -1.3924 2.4111 42 1 1.6652 -2.7117 3.5652 43 1 3.1181 -3.2255 2.6747 44 1 0.5751 -4.4054 0.6117 45 1 1.0797 -7.5717 3.9598 46 1 0.7784 -4.0685 5.6667 47 1 1.9999 -3.6033 7.7512 48 1 4.2658 -4.5023 8.0806 49 1 5.3187 -5.8775 6.3330 50 1 3.5763 -7.3213 3.5668 51 1 5.1483 -6.2262 2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:34:02 Heat of formation + Delta-G solvation = -63.074668 kcal Electronic energy + Delta-G solvation = -29556.893467 eV Core-core repulsion = 25864.347449 eV Total energy + Delta-G solvation = -3692.546018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.04073 -39.11918 -37.48813 -37.13777 -36.81909 -32.81262 -32.36244 -30.28617 -29.39841 -29.06177 -27.83013 -27.65454 -27.37227 -26.60843 -24.37025 -22.96804 -21.93815 -20.42071 -19.47836 -18.89759 -18.38076 -17.49702 -17.19042 -16.81621 -16.51858 -16.22650 -15.91046 -15.79540 -15.28397 -14.96431 -14.84880 -14.76160 -14.51223 -14.33753 -14.06182 -13.93675 -13.74303 -13.62174 -13.43704 -13.36764 -13.33110 -13.21883 -13.17540 -12.94092 -12.93142 -12.88411 -12.39376 -12.35023 -12.18117 -11.96509 -11.88731 -11.79738 -11.69089 -11.57927 -11.57478 -11.29468 -10.37798 -10.25153 -10.05492 -9.88145 -9.83053 -9.49697 -9.14262 0.06232 0.28770 0.35015 0.77775 1.10790 1.14722 1.43305 1.47629 1.47941 1.67215 1.80105 1.87534 2.11645 2.48225 2.68696 3.50468 3.76974 3.92386 3.99294 4.06793 4.13253 4.13699 4.20044 4.22080 4.34548 4.38520 4.47986 4.51600 4.56237 4.62331 4.69416 4.73196 4.75867 4.77560 4.78178 4.83673 4.84733 4.86127 5.01384 5.01480 5.04033 5.10472 5.10962 5.19498 5.26752 5.34385 5.36331 5.42275 5.46887 5.50280 5.54970 5.56576 5.59037 5.63656 5.73534 5.98930 6.80419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.376 4.376 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.313 2.687 6 C -0.517 4.517 7 C -0.518 4.518 8 O -0.632 6.632 9 C 0.148 3.852 10 C -0.099 4.099 11 C -0.191 4.191 12 S 0.107 5.893 13 C -0.211 4.211 14 C -0.054 4.054 15 C -0.019 4.019 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.080 4.080 22 O -0.553 6.553 23 Si 0.971 3.029 24 H -0.258 1.258 25 H -0.258 1.258 26 H -0.262 1.262 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.175 0.825 45 H 0.177 0.823 46 H 0.134 0.866 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 -0.571 1.654 1.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.419 4.419 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.444 2.556 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.591 6.591 9 C 0.071 3.929 10 C -0.111 4.111 11 C -0.326 4.326 12 S 0.373 5.627 13 C -0.346 4.346 14 C -0.067 4.067 15 C -0.021 4.021 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.133 4.133 19 C -0.154 4.154 20 C -0.075 4.075 21 C -0.190 4.190 22 O -0.361 6.361 23 Si 0.795 3.205 24 H -0.182 1.182 25 H -0.182 1.182 26 H -0.186 1.186 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.193 0.807 45 H 0.194 0.806 46 H 0.152 0.848 47 H 0.165 0.835 48 H 0.164 0.836 49 H 0.147 0.853 50 H 0.098 0.902 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.025 -1.829 1.312 2.250 hybrid contribution 0.885 1.209 0.290 1.526 sum 0.910 -0.620 1.602 1.944 Atomic orbital electron populations 1.21543 0.94104 1.01856 1.01892 1.25821 1.00452 1.02904 1.12759 1.21610 1.01254 0.94694 1.02316 1.21540 1.00945 1.00072 0.96828 0.76256 0.62277 0.52657 0.64442 1.27084 1.06969 1.09851 1.18000 1.27118 1.25717 1.04787 1.04281 1.85270 1.79545 1.46534 1.47785 1.20480 0.97886 0.87698 0.86864 1.18778 1.01703 0.96501 0.94131 1.25391 1.05388 0.98043 1.03811 1.84297 1.54945 1.10022 1.13442 1.25845 1.05954 1.01723 1.01126 1.17431 1.01240 0.93246 0.94786 1.18347 0.93086 0.98032 0.92657 1.21446 1.00513 0.97938 0.93324 1.21429 0.94779 0.99442 0.97522 1.21458 0.95698 0.96714 0.99474 1.21233 1.00088 0.99927 0.94129 1.19490 0.93900 0.99417 0.94661 1.24751 1.06165 0.97017 0.91098 1.86468 1.80976 1.36908 1.31709 0.85412 0.77121 0.77943 0.79978 1.18197 1.18181 1.18643 0.92144 0.93159 0.92446 0.91921 0.92901 0.91798 0.92443 0.93141 0.92283 0.91344 0.90231 0.90939 0.91214 0.90347 0.91714 0.91130 0.91113 0.80743 0.80570 0.84832 0.83468 0.83619 0.85335 0.90163 0.75832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 2 C -0.38 -0.08 0.53 -10.79 -0.01 -0.08 16 3 C -0.14 0.09 7.85 71.98 0.56 0.65 16 4 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 5 Si 1.31 -0.68 8.45 68.60 0.58 -0.10 16 6 C -0.52 0.15 8.50 113.37 0.96 1.11 16 7 C -0.52 -0.48 8.50 113.37 0.96 0.48 16 8 O -0.63 -1.64 7.43 -148.98 -1.11 -2.75 16 9 C 0.15 0.50 4.96 71.24 0.35 0.85 16 10 C -0.10 -0.45 5.81 -20.75 -0.12 -0.57 16 11 C -0.19 -0.77 10.41 66.66 0.69 -0.07 16 12 S 0.11 0.21 23.32 -56.49 -1.32 -1.11 16 13 C -0.21 -0.43 10.00 66.98 0.67 0.24 16 14 C -0.05 -0.20 4.25 -21.15 -0.09 -0.29 16 15 C -0.02 -0.07 4.86 -20.04 -0.10 -0.16 16 16 C -0.11 -0.16 9.56 22.49 0.22 0.06 16 17 C -0.11 0.08 10.03 22.24 0.22 0.31 16 18 C -0.12 0.02 10.04 22.31 0.22 0.25 16 19 C -0.14 -0.29 8.65 22.24 0.19 -0.10 16 20 C -0.07 -0.25 5.32 -19.65 -0.10 -0.35 16 21 C -0.08 -0.06 2.11 71.23 0.15 0.09 16 22 O -0.55 -0.75 12.80 -148.98 -1.91 -2.66 16 23 Si 0.97 -0.27 25.49 68.60 1.75 1.48 16 24 H -0.26 -0.27 7.11 99.48 0.71 0.44 16 25 H -0.26 0.06 7.11 99.48 0.71 0.77 16 26 H -0.26 -0.50 6.73 99.48 0.67 0.17 16 27 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 28 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.06 0.07 7.97 -2.39 -0.02 0.05 16 30 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 31 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 33 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 34 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.06 0.00 7.79 -2.39 -0.02 -0.01 16 36 H 0.07 -0.02 7.48 -2.39 -0.02 -0.04 16 37 H 0.08 -0.11 7.79 -2.38 -0.02 -0.13 16 38 H 0.07 0.00 7.79 -2.39 -0.02 -0.02 16 39 H 0.07 0.11 7.79 -2.39 -0.02 0.09 16 40 H 0.08 -0.03 7.79 -2.39 -0.02 -0.05 16 41 H 0.06 0.12 7.48 -2.39 -0.02 0.10 16 42 H 0.07 0.10 7.00 -2.38 -0.02 0.08 16 43 H 0.07 0.28 7.21 -2.39 -0.02 0.26 16 44 H 0.18 0.55 7.49 -2.91 -0.02 0.52 16 45 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 46 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 47 H 0.15 -0.78 8.06 -2.91 -0.02 -0.80 16 48 H 0.15 -0.68 8.06 -2.91 -0.02 -0.70 16 49 H 0.13 0.04 4.89 -2.91 -0.01 0.03 16 50 H 0.08 -0.08 6.65 -2.39 -0.02 -0.09 16 51 H 0.39 -2.50 8.74 -74.06 -0.65 -3.15 16 Total: 0.00 -9.77 417.40 4.90 -4.88 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: 0.98 Total: -3.02 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.92 Total: 3.27 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: -3.01 Total: -5.41 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: 2.33 Total: 1.39 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.32 Total: -1.11 kcal Total: -9.77 4.90 -4.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.199 kcal (2) G-P(sol) polarization free energy of solvation -9.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds