Wall clock time and date at job start Mon Mar 8 2021 04:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86294 * 109.47340 * 2 1 4 4 C 1.86300 * 109.47234 * 239.99544 * 2 1 3 5 5 C 1.86804 * 109.46845 * 120.00042 * 2 1 3 6 6 C 1.37999 * 120.05792 * 263.52735 * 5 2 1 7 7 C 1.38349 * 120.11971 * 180.02562 * 6 5 2 8 8 C 1.38295 * 120.24203 * 0.02562 * 7 6 5 9 9 C 1.38049 * 120.12326 * 359.67761 * 8 7 6 10 10 C 1.39312 * 119.87423 * 0.59760 * 9 8 7 11 11 C 1.48392 * 120.12108 * 179.69596 * 10 9 8 12 12 C 1.39320 * 120.11623 * 107.69097 * 11 10 9 13 13 C 1.38042 * 119.87399 * 179.97438 * 12 11 10 14 14 C 1.38297 * 120.12032 * 359.97438 * 13 12 11 15 15 C 1.38342 * 120.24741 * 0.02562 * 14 13 12 16 16 C 1.37994 * 120.11859 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.05968 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.47095 * 104.24897 * 17 16 15 19 19 Si 1.86292 * 109.47397 * 344.24531 * 17 16 15 20 20 H 1.48503 * 109.46944 * 59.99780 * 19 17 16 21 21 H 1.48498 * 109.47525 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47310 * 300.00031 * 19 17 16 23 23 H 1.08996 * 109.47598 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.47021 * 60.00410 * 1 2 3 25 25 H 1.08998 * 109.47649 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46728 * 299.99769 * 3 2 1 28 28 H 1.08996 * 109.47344 * 59.99712 * 3 2 1 29 29 H 1.08999 * 109.47296 * 307.55014 * 4 2 1 30 30 H 1.09000 * 109.47012 * 67.54832 * 4 2 1 31 31 H 1.08996 * 109.47440 * 187.54521 * 4 2 1 32 32 H 1.07998 * 119.93957 * 0.04717 * 6 5 2 33 33 H 1.07995 * 119.87796 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.93812 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.06108 * 180.31751 * 9 8 7 36 36 H 1.08000 * 120.06552 * 359.95867 * 12 11 10 37 37 H 1.08002 * 119.94130 * 179.97438 * 13 12 11 38 38 H 1.08005 * 119.87625 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.93822 * 179.71761 * 15 14 13 40 40 H 1.09009 * 109.47356 * 224.24098 * 17 16 15 41 41 H 0.96702 * 113.99980 * 293.65278 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.8429 -0.1562 2.6442 7 6 3.3046 -0.8071 3.7743 8 6 3.4113 -2.1858 3.7894 9 6 3.0508 -2.9208 2.6778 10 6 2.5907 -2.2702 1.5351 11 6 2.2081 -3.0544 0.3348 12 6 0.8661 -3.1878 -0.0146 13 6 0.5159 -3.9179 -1.1325 14 6 1.4944 -4.5160 -1.9054 15 6 2.8286 -4.3869 -1.5631 16 6 3.1899 -3.6601 -0.4470 17 6 4.6436 -3.5207 -0.0751 18 8 5.1016 -2.2130 -0.4250 19 14 5.6446 -4.7956 -0.9933 20 1 5.4859 -4.5905 -2.4555 21 1 7.0770 -4.6587 -0.6263 22 1 5.1687 -6.1546 -0.6296 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2701 -0.8900 28 1 2.1207 2.2703 0.8899 29 1 2.0146 -1.8596 -1.5911 30 1 2.2351 -0.2926 -2.4059 31 1 3.5656 -0.9967 -1.4562 32 1 2.7616 0.9206 2.6377 33 1 3.5828 -0.2364 4.6479 34 1 3.7720 -2.6889 4.6744 35 1 3.1297 -3.9978 2.6924 36 1 0.1011 -2.7210 0.5882 37 1 -0.5242 -4.0224 -1.4041 38 1 1.2160 -5.0861 -2.7794 39 1 3.5883 -4.8598 -2.1676 40 1 4.7601 -3.6713 0.9983 41 1 5.1184 -2.0439 -1.3769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651794_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:13 Heat of formation + Delta-G solvation = -20.782568 kcal Electronic energy + Delta-G solvation = -21484.739438 eV Core-core repulsion = 18645.707765 eV Total energy + Delta-G solvation = -2839.031673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18861 -39.20322 -37.53128 -33.70133 -32.63804 -31.58870 -29.85535 -29.36913 -28.37481 -28.29549 -26.64484 -24.30733 -23.09541 -22.56240 -21.63850 -18.65936 -17.77458 -17.06565 -16.67341 -16.40056 -15.71066 -15.65167 -15.54112 -14.97968 -14.71788 -14.46819 -14.23565 -14.20266 -13.98802 -13.86117 -13.46285 -13.32294 -13.21173 -13.16997 -12.93273 -12.67639 -12.57707 -12.46843 -12.14519 -11.98320 -11.88862 -11.42557 -10.92428 -10.75130 -10.72048 -10.39388 -9.86842 -9.80722 -9.58678 -9.27793 0.18495 0.32546 0.53744 0.67089 1.12851 1.37962 1.49854 1.83856 1.88982 1.98161 2.09132 2.68137 2.71129 3.05343 3.51650 3.69301 3.74585 3.93600 4.10141 4.20644 4.28209 4.40295 4.50077 4.58358 4.63246 4.72057 4.76851 4.80117 4.82039 4.83489 4.92311 4.94916 4.99674 5.00840 5.13277 5.21241 5.42876 5.47299 5.52981 5.53759 5.59644 5.64634 5.71029 5.75509 5.79003 5.97150 6.25229 6.58025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.040 2.960 3 C -0.447 4.447 4 C -0.453 4.453 5 C -0.344 4.344 6 C -0.088 4.088 7 C -0.129 4.129 8 C -0.109 4.109 9 C -0.121 4.121 10 C -0.008 4.008 11 C -0.021 4.021 12 C -0.113 4.113 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.127 4.127 16 C -0.099 4.099 17 C -0.081 4.081 18 O -0.526 6.526 19 Si 0.940 3.060 20 H -0.250 1.250 21 H -0.252 1.252 22 H -0.248 1.248 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -0.505 -1.324 1.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.233 2.767 3 C -0.555 4.555 4 C -0.561 4.561 5 C -0.386 4.386 6 C -0.106 4.106 7 C -0.147 4.147 8 C -0.127 4.127 9 C -0.139 4.139 10 C -0.008 4.008 11 C -0.021 4.021 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.145 4.145 16 C -0.100 4.100 17 C -0.192 4.192 18 O -0.331 6.331 19 Si 0.763 3.237 20 H -0.174 1.174 21 H -0.176 1.176 22 H -0.171 1.171 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.420 -1.106 -1.060 1.588 hybrid contribution -0.301 0.137 -0.113 0.350 sum -0.722 -0.968 -1.173 1.684 Atomic orbital electron populations 1.26261 1.20415 1.04689 1.04363 0.78361 0.66983 0.66409 0.64948 1.26104 1.06575 1.18446 1.04330 1.26517 1.07115 1.08528 1.13908 1.27297 1.03581 0.97614 1.10110 1.21020 0.97103 0.99582 0.92889 1.21269 1.00280 0.94714 0.98479 1.21080 0.99281 0.94294 0.98015 1.21183 1.00153 0.99472 0.93083 1.18443 0.97642 0.92875 0.91888 1.18598 0.92584 0.96700 0.94235 1.21351 0.95184 0.99116 0.97389 1.21156 0.99782 0.97104 0.94881 1.21159 0.92510 0.99427 0.99801 1.21070 0.97054 0.99519 0.96835 1.20250 0.95822 0.98323 0.95573 1.24947 0.93766 0.93511 1.06956 1.86609 1.87456 1.30597 1.28460 0.85855 0.79921 0.78314 0.79620 1.17353 1.17602 1.17104 0.91293 0.91102 0.90955 0.90917 0.91111 0.91343 0.90199 0.91780 0.90389 0.86243 0.86446 0.86212 0.86423 0.85142 0.85479 0.85613 0.85867 0.86490 0.78206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.16 8.65 101.05 0.87 1.03 16 2 Si 1.04 -0.55 10.73 -169.99 -1.82 -2.37 16 3 C -0.45 0.09 8.37 101.05 0.85 0.94 16 4 C -0.45 0.05 7.37 101.05 0.75 0.80 16 5 C -0.34 -0.49 4.61 -39.25 -0.18 -0.67 16 6 C -0.09 -0.14 9.28 -39.63 -0.37 -0.50 16 7 C -0.13 -0.21 10.04 -39.52 -0.40 -0.61 16 8 C -0.11 -0.17 10.03 -39.63 -0.40 -0.57 16 9 C -0.12 -0.22 8.38 -39.25 -0.33 -0.55 16 10 C -0.01 -0.02 4.41 -104.90 -0.46 -0.48 16 11 C -0.02 -0.02 2.86 -104.90 -0.30 -0.32 16 12 C -0.11 -0.03 6.68 -39.25 -0.26 -0.29 16 13 C -0.11 0.06 9.53 -39.63 -0.38 -0.32 16 14 C -0.11 0.05 9.74 -39.52 -0.38 -0.33 16 15 C -0.13 0.00 8.26 -39.63 -0.33 -0.33 16 16 C -0.10 -0.06 3.98 -104.30 -0.42 -0.47 16 17 C -0.08 -0.02 2.14 36.01 0.08 0.05 16 18 O -0.53 -0.31 11.59 -35.23 -0.41 -0.71 16 19 Si 0.94 -0.21 25.42 -169.99 -4.32 -4.53 16 20 H -0.25 0.14 6.71 56.52 0.38 0.52 16 21 H -0.25 -0.31 7.11 56.52 0.40 0.10 16 22 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 23 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.07 -0.04 5.42 -51.93 -0.28 -0.32 16 26 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 27 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 28 H 0.07 -0.04 7.65 -51.93 -0.40 -0.43 16 29 H 0.08 0.02 3.48 -51.93 -0.18 -0.16 16 30 H 0.06 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.08 -0.02 5.05 -51.93 -0.26 -0.29 16 32 H 0.12 -0.02 7.25 -52.49 -0.38 -0.40 16 33 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 34 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 35 H 0.12 0.07 8.06 -52.49 -0.42 -0.36 16 36 H 0.13 -0.07 6.51 -52.49 -0.34 -0.41 16 37 H 0.13 -0.28 8.06 -52.49 -0.42 -0.71 16 38 H 0.13 -0.28 8.06 -52.48 -0.42 -0.70 16 39 H 0.12 -0.14 4.90 -52.49 -0.26 -0.39 16 40 H 0.12 0.05 6.33 -51.92 -0.33 -0.28 16 41 H 0.37 -0.84 7.31 45.56 0.33 -0.51 16 LS Contribution 317.03 15.07 4.78 4.78 Total: 0.00 -4.05 317.03 -8.53 -12.58 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -5.10 Total: -7.12 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.66 Total: -2.62 kcal Atomic # 8 Polarization: -0.31 SS G_CDS: -0.41 Total: -0.71 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -6.14 Total: -6.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -4.05 -8.53 -12.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -4.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds