Wall clock time and date at job start Mon Mar 8 2021 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86294 * 109.47340 * 2 1 4 4 C 1.86300 * 109.47234 * 239.99544 * 2 1 3 5 5 C 1.86804 * 109.46845 * 120.00042 * 2 1 3 6 6 C 1.37999 * 120.05792 * 263.52735 * 5 2 1 7 7 C 1.38349 * 120.11971 * 180.02562 * 6 5 2 8 8 C 1.38295 * 120.24203 * 0.02562 * 7 6 5 9 9 C 1.38049 * 120.12326 * 359.67761 * 8 7 6 10 10 C 1.39312 * 119.87423 * 0.59760 * 9 8 7 11 11 C 1.48392 * 120.12108 * 179.69596 * 10 9 8 12 12 C 1.39320 * 120.11623 * 107.69097 * 11 10 9 13 13 C 1.38042 * 119.87399 * 179.97438 * 12 11 10 14 14 C 1.38297 * 120.12032 * 359.97438 * 13 12 11 15 15 C 1.38342 * 120.24741 * 0.02562 * 14 13 12 16 16 C 1.37994 * 120.11859 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.05968 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.47095 * 104.24897 * 17 16 15 19 19 Si 1.86292 * 109.47397 * 344.24531 * 17 16 15 20 20 H 1.48503 * 109.46944 * 59.99780 * 19 17 16 21 21 H 1.48498 * 109.47525 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47310 * 300.00031 * 19 17 16 23 23 H 1.08996 * 109.47598 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.47021 * 60.00410 * 1 2 3 25 25 H 1.08998 * 109.47649 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46728 * 299.99769 * 3 2 1 28 28 H 1.08996 * 109.47344 * 59.99712 * 3 2 1 29 29 H 1.08999 * 109.47296 * 307.55014 * 4 2 1 30 30 H 1.09000 * 109.47012 * 67.54832 * 4 2 1 31 31 H 1.08996 * 109.47440 * 187.54521 * 4 2 1 32 32 H 1.07998 * 119.93957 * 0.04717 * 6 5 2 33 33 H 1.07995 * 119.87796 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.93812 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.06108 * 180.31751 * 9 8 7 36 36 H 1.08000 * 120.06552 * 359.95867 * 12 11 10 37 37 H 1.08002 * 119.94130 * 179.97438 * 13 12 11 38 38 H 1.08005 * 119.87625 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.93822 * 179.71761 * 15 14 13 40 40 H 1.09009 * 109.47356 * 224.24098 * 17 16 15 41 41 H 0.96702 * 113.99980 * 293.65278 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.8429 -0.1562 2.6442 7 6 3.3046 -0.8071 3.7743 8 6 3.4113 -2.1858 3.7894 9 6 3.0508 -2.9208 2.6778 10 6 2.5907 -2.2702 1.5351 11 6 2.2081 -3.0544 0.3348 12 6 0.8661 -3.1878 -0.0146 13 6 0.5159 -3.9179 -1.1325 14 6 1.4944 -4.5160 -1.9054 15 6 2.8286 -4.3869 -1.5631 16 6 3.1899 -3.6601 -0.4470 17 6 4.6436 -3.5207 -0.0751 18 8 5.1016 -2.2130 -0.4250 19 14 5.6446 -4.7956 -0.9933 20 1 5.4859 -4.5905 -2.4555 21 1 7.0770 -4.6587 -0.6263 22 1 5.1687 -6.1546 -0.6296 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2701 -0.8900 28 1 2.1207 2.2703 0.8899 29 1 2.0146 -1.8596 -1.5911 30 1 2.2351 -0.2926 -2.4059 31 1 3.5656 -0.9967 -1.4562 32 1 2.7616 0.9206 2.6377 33 1 3.5828 -0.2364 4.6479 34 1 3.7720 -2.6889 4.6744 35 1 3.1297 -3.9978 2.6924 36 1 0.1011 -2.7210 0.5882 37 1 -0.5242 -4.0224 -1.4041 38 1 1.2160 -5.0861 -2.7794 39 1 3.5883 -4.8598 -2.1676 40 1 4.7601 -3.6713 0.9983 41 1 5.1184 -2.0439 -1.3769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:12 Heat of formation + Delta-G solvation = -9.914584 kcal Electronic energy + Delta-G solvation = -21484.268167 eV Core-core repulsion = 18645.707765 eV Total energy + Delta-G solvation = -2838.560402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17444 -39.23069 -37.52826 -33.70147 -32.60737 -31.64415 -29.86307 -29.33518 -28.32823 -28.25883 -26.62920 -24.30518 -23.15074 -22.56040 -21.63711 -18.65396 -17.77918 -17.04685 -16.67011 -16.40793 -15.71197 -15.67813 -15.55587 -14.96927 -14.70563 -14.45661 -14.23590 -14.18188 -13.96362 -13.84688 -13.46628 -13.31185 -13.16640 -13.14606 -12.90137 -12.66859 -12.54343 -12.44171 -12.17971 -12.01282 -11.86650 -11.41417 -10.89788 -10.73956 -10.71717 -10.39116 -9.85167 -9.80280 -9.65553 -9.31248 0.18680 0.36108 0.47462 0.61098 1.13283 1.38683 1.48638 1.85940 1.87311 2.03457 2.13493 2.71241 2.74528 2.98501 3.55936 3.70211 3.78285 3.99814 4.15149 4.20204 4.24654 4.43509 4.55107 4.57819 4.63909 4.68735 4.81130 4.83529 4.86417 4.86819 4.94774 4.99553 5.03560 5.04920 5.09672 5.16990 5.46843 5.50008 5.56353 5.56936 5.59741 5.63413 5.66945 5.70524 5.79929 6.02144 6.19796 6.70900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.076 2.924 3 C -0.455 4.455 4 C -0.461 4.461 5 C -0.360 4.360 6 C -0.102 4.102 7 C -0.144 4.144 8 C -0.121 4.121 9 C -0.135 4.135 10 C -0.015 4.015 11 C -0.030 4.030 12 C -0.120 4.120 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.083 4.083 18 O -0.539 6.539 19 Si 0.972 3.028 20 H -0.239 1.239 21 H -0.276 1.276 22 H -0.257 1.257 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -0.531 -2.213 2.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.266 2.734 3 C -0.563 4.563 4 C -0.568 4.568 5 C -0.400 4.400 6 C -0.120 4.120 7 C -0.162 4.162 8 C -0.139 4.139 9 C -0.153 4.153 10 C -0.016 4.016 11 C -0.030 4.030 12 C -0.137 4.137 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.153 4.153 16 C -0.106 4.106 17 C -0.193 4.193 18 O -0.346 6.346 19 Si 0.796 3.204 20 H -0.163 1.163 21 H -0.201 1.201 22 H -0.181 1.181 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.999 -1.130 -1.951 2.466 hybrid contribution -0.115 0.139 0.182 0.257 sum -1.114 -0.991 -1.769 2.314 Atomic orbital electron populations 1.26326 1.20590 1.04937 1.04573 0.77842 0.66459 0.65491 0.63615 1.26196 1.06362 1.18995 1.04731 1.26592 1.07217 1.08629 1.14406 1.27769 1.03386 0.97806 1.10994 1.21299 0.97200 1.00426 0.93047 1.21521 1.00516 0.94997 0.99139 1.21307 0.99448 0.94576 0.98529 1.21379 1.00557 0.99934 0.93461 1.18622 0.97502 0.93245 0.92182 1.18622 0.93073 0.97140 0.94202 1.21472 0.94991 0.99432 0.97850 1.21398 1.00791 0.96545 0.94434 1.21432 0.92262 0.99236 1.00291 1.21245 0.97743 0.99507 0.96778 1.20291 0.95727 0.98638 0.95915 1.24989 0.94032 0.93591 1.06729 1.86576 1.87494 1.30852 1.29688 0.85406 0.77907 0.77252 0.79848 1.16251 1.20084 1.18135 0.91380 0.90592 0.90723 0.91342 0.90644 0.91044 0.90346 0.91259 0.90367 0.84994 0.85279 0.85041 0.85935 0.84778 0.83735 0.83793 0.84931 0.87268 0.76895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.44 8.65 113.37 0.98 1.42 16 2 Si 1.08 -1.07 10.73 68.60 0.74 -0.33 16 3 C -0.46 0.20 8.37 113.37 0.95 1.15 16 4 C -0.46 0.19 7.37 113.37 0.84 1.03 16 5 C -0.36 -1.27 4.61 22.48 0.10 -1.16 16 6 C -0.10 -0.39 9.28 22.24 0.21 -0.19 16 7 C -0.14 -0.60 10.04 22.31 0.22 -0.38 16 8 C -0.12 -0.52 10.03 22.24 0.22 -0.30 16 9 C -0.14 -0.66 8.38 22.48 0.19 -0.47 16 10 C -0.02 -0.07 4.41 -20.04 -0.09 -0.16 16 11 C -0.03 -0.07 2.86 -20.04 -0.06 -0.13 16 12 C -0.12 -0.05 6.68 22.48 0.15 0.10 16 13 C -0.11 0.20 9.53 22.24 0.21 0.42 16 14 C -0.11 0.22 9.74 22.31 0.22 0.44 16 15 C -0.14 0.06 8.26 22.24 0.18 0.24 16 16 C -0.11 -0.15 3.98 -19.65 -0.08 -0.23 16 17 C -0.08 -0.10 2.14 71.24 0.15 0.05 16 18 O -0.54 -0.97 11.59 -148.98 -1.73 -2.70 16 19 Si 0.97 -0.15 25.42 68.60 1.74 1.60 16 20 H -0.24 0.48 6.71 99.48 0.67 1.15 16 21 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 22 H -0.26 -0.33 7.11 99.48 0.71 0.38 16 23 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 24 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 25 H 0.07 -0.10 5.42 -2.39 -0.01 -0.12 16 26 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 27 H 0.07 -0.11 7.96 -2.39 -0.02 -0.12 16 28 H 0.07 -0.08 7.65 -2.39 -0.02 -0.10 16 29 H 0.08 0.01 3.48 -2.39 -0.01 0.00 16 30 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 31 H 0.08 -0.04 5.05 -2.39 -0.01 -0.06 16 32 H 0.13 0.03 7.25 -2.91 -0.02 0.01 16 33 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 35 H 0.12 0.33 8.06 -2.91 -0.02 0.30 16 36 H 0.13 -0.13 6.51 -2.91 -0.02 -0.15 16 37 H 0.14 -0.84 8.06 -2.91 -0.02 -0.86 16 38 H 0.14 -0.87 8.06 -2.91 -0.02 -0.89 16 39 H 0.13 -0.40 4.90 -2.91 -0.01 -0.41 16 40 H 0.11 0.26 6.33 -2.38 -0.02 0.24 16 41 H 0.38 -1.63 7.31 -74.06 -0.54 -2.17 16 Total: 0.00 -9.23 317.03 6.36 -2.87 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: 1.21 Total: -3.27 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.40 Total: 1.83 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -1.73 Total: -2.70 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.48 Total: 1.27 kcal Total: -9.23 6.36 -2.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.047 kcal (2) G-P(sol) polarization free energy of solvation -9.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds