Wall clock time and date at job start Mon Mar 8 2021 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.47446 * 2 1 4 4 C 1.86305 * 109.47074 * 239.99994 * 2 1 3 5 5 C 1.86303 * 109.47244 * 120.00082 * 2 1 3 6 6 C 1.53007 * 109.46758 * 59.99873 * 5 2 1 7 7 O 1.42897 * 109.46539 * 180.02562 * 6 5 2 8 8 C 1.35636 * 116.99712 * 180.02562 * 7 6 5 9 9 C 1.40325 * 120.22965 * 179.97438 * 8 7 6 10 10 C 1.48312 * 121.15641 * 359.94957 * 9 8 7 11 11 C 1.39355 * 120.12675 * 247.31120 * 10 9 8 12 12 C 1.38021 * 119.87436 * 179.69902 * 11 10 9 13 13 C 1.38309 * 120.12598 * 0.59920 * 12 11 10 14 14 C 1.38349 * 120.25024 * 359.67395 * 13 12 11 15 15 C 1.37995 * 120.12603 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.06583 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.46890 * 16.58150 * 16 15 14 18 18 Si 1.86293 * 109.47509 * 256.57887 * 16 15 14 19 19 H 1.48499 * 109.47150 * 59.99877 * 18 16 15 20 20 H 1.48494 * 109.47574 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46998 * 300.00063 * 18 16 15 22 22 C 1.39833 * 117.68474 * 179.97438 * 9 8 7 23 23 C 1.38476 * 117.88834 * 359.97438 * 22 9 8 24 24 C 1.50699 * 119.95096 * 180.02562 * 23 22 9 25 25 F 1.39896 * 109.47278 * 90.00057 * 24 23 22 26 26 F 1.39901 * 109.47123 * 210.00401 * 24 23 22 27 27 F 1.39900 * 109.47414 * 330.00397 * 24 23 22 28 28 N 1.31898 * 120.09730 * 0.02562 * 23 22 9 29 29 N 1.28282 * 122.56247 * 359.68648 * 28 23 22 30 30 H 1.08999 * 109.47314 * 299.99856 * 1 2 3 31 31 H 1.09002 * 109.46995 * 59.99769 * 1 2 3 32 32 H 1.09000 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47590 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46689 * 300.00045 * 3 2 1 35 35 H 1.08999 * 109.46747 * 59.99796 * 3 2 1 36 36 H 1.09000 * 109.46979 * 300.00304 * 4 2 1 37 37 H 1.09002 * 109.47016 * 60.00250 * 4 2 1 38 38 H 1.08995 * 109.47043 * 179.97438 * 4 2 1 39 39 H 1.08991 * 109.47174 * 179.97438 * 5 2 1 40 40 H 1.08999 * 109.47015 * 300.00244 * 5 2 1 41 41 H 1.08991 * 109.47056 * 299.99800 * 6 5 2 42 42 H 1.08999 * 109.47055 * 60.00395 * 6 5 2 43 43 H 1.08001 * 120.05903 * 359.97438 * 11 10 9 44 44 H 1.08003 * 119.93957 * 180.29463 * 12 11 10 45 45 H 1.07998 * 119.87952 * 179.70039 * 13 12 11 46 46 H 1.07994 * 119.94234 * 180.02562 * 14 13 12 47 47 H 1.09006 * 109.46755 * 136.57549 * 16 15 14 48 48 H 0.96706 * 114.00208 * 65.67009 * 17 16 15 49 49 H 1.08002 * 121.05449 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5211 7 8 2.4498 -2.9942 2.6881 8 6 2.0857 -4.2917 2.8418 9 6 2.5155 -5.0181 3.9629 10 6 3.3722 -4.3932 4.9998 11 6 4.6879 -4.8196 5.1701 12 6 5.4825 -4.2301 6.1325 13 6 4.9714 -3.2266 6.9354 14 6 3.6642 -2.8032 6.7746 15 6 2.8625 -3.3810 5.8115 16 6 1.4389 -2.9183 5.6371 17 8 1.2664 -1.6548 6.2819 18 14 0.2828 -4.1661 6.3968 19 1 0.5848 -4.3037 7.8442 20 1 -1.1199 -3.7105 6.2245 21 1 0.4621 -5.4792 5.7267 22 6 2.1083 -6.3517 4.0681 23 6 1.3090 -6.8663 3.0612 24 6 0.8430 -8.2978 3.1280 25 9 -0.3778 -8.3595 3.8084 26 9 0.6797 -8.7961 1.8310 27 9 1.7944 -9.0668 3.8067 28 7 0.9550 -6.1053 2.0437 29 7 1.3179 -4.8793 1.9393 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1207 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3644 -2.4112 38 1 3.5739 -0.8779 -1.5214 39 1 3.5739 -0.8786 1.5209 40 1 2.1206 -0.3645 2.4111 41 1 0.8840 -2.3207 1.5211 42 1 2.3373 -2.8346 0.6311 43 1 5.0864 -5.6067 4.5472 44 1 6.5038 -4.5565 6.2621 45 1 5.5952 -2.7715 7.6904 46 1 3.2703 -2.0189 7.4040 47 1 1.2173 -2.8173 4.5746 48 1 1.7737 -0.9359 5.8806 49 1 2.4071 -6.9608 4.9084 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651794_17781646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:10 Heat of formation + Delta-G solvation = -183.326935 kcal Electronic energy + Delta-G solvation = -36958.062261 eV Core-core repulsion = 31787.473337 eV Total energy + Delta-G solvation = -5170.588924 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 400.134 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -51.23590 -48.78200 -48.66543 -42.87325 -40.62619 -39.94198 -37.70065 -35.59761 -34.34972 -32.56329 -32.39562 -31.15894 -29.56228 -28.55366 -28.53097 -28.05069 -27.00157 -26.47251 -24.73664 -23.78899 -22.96457 -22.25502 -20.25091 -19.80890 -19.65255 -19.57745 -18.78127 -18.67751 -17.92626 -17.35974 -16.73340 -16.51747 -16.02692 -15.94545 -15.75868 -15.66576 -15.44198 -15.40655 -15.14752 -15.11512 -14.88049 -14.81787 -14.80763 -14.47191 -14.40661 -14.33730 -14.24211 -14.13086 -13.95019 -13.84501 -13.81714 -13.40108 -13.29950 -13.20433 -12.95347 -12.88782 -12.70714 -12.62702 -12.40230 -12.24894 -12.16073 -11.74665 -11.46906 -11.35693 -11.18698 -11.04325 -10.94463 -10.93619 -10.54500 -9.93547 -9.66681 -0.88297 -0.70433 0.04962 0.21381 1.07361 1.07785 1.30455 1.32733 1.47110 1.66591 1.71733 1.85848 1.87892 1.90099 2.32937 2.45067 2.47257 2.59226 2.83096 3.16183 3.19405 3.23326 3.40257 3.43995 3.51175 3.82235 3.85962 3.86818 3.94683 3.97954 4.04658 4.23382 4.28284 4.33107 4.40547 4.50332 4.60496 4.61037 4.64830 4.65060 4.65854 4.67308 4.69203 4.72365 4.88148 4.99775 5.24223 5.32482 5.36371 5.40874 5.44786 5.46495 5.73693 5.79906 6.39586 7.07868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.026 2.974 3 C -0.449 4.449 4 C -0.455 4.455 5 C -0.421 4.421 6 C 0.067 3.933 7 O -0.279 6.279 8 C 0.300 3.700 9 C -0.064 4.064 10 C -0.054 4.054 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.101 4.101 14 C -0.105 4.105 15 C -0.084 4.084 16 C -0.089 4.089 17 O -0.534 6.534 18 Si 0.986 3.014 19 H -0.240 1.240 20 H -0.245 1.245 21 H -0.246 1.246 22 C -0.031 4.031 23 C -0.057 4.057 24 C 0.537 3.463 25 F -0.165 7.165 26 F -0.157 7.157 27 F -0.167 7.167 28 N -0.143 5.143 29 N -0.284 5.284 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.138 0.862 47 H 0.078 0.922 48 H 0.371 0.629 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 3.570 0.950 5.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.220 2.780 3 C -0.557 4.557 4 C -0.563 4.563 5 C -0.503 4.503 6 C -0.007 4.007 7 O -0.182 6.182 8 C 0.117 3.883 9 C -0.076 4.076 10 C -0.055 4.055 11 C -0.108 4.108 12 C -0.136 4.136 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.085 4.085 16 C -0.196 4.196 17 O -0.340 6.340 18 Si 0.803 3.197 19 H -0.162 1.162 20 H -0.168 1.168 21 H -0.170 1.170 22 C -0.058 4.058 23 C -0.205 4.205 24 C 0.481 3.519 25 F -0.146 7.146 26 F -0.139 7.139 27 F -0.148 7.148 28 N 0.011 4.989 29 N -0.142 5.142 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.156 0.844 47 H 0.096 0.904 48 H 0.219 0.781 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.916 2.999 0.464 3.589 hybrid contribution 1.512 0.327 0.496 1.624 sum 3.428 3.326 0.960 4.872 Atomic orbital electron populations 1.26188 1.20512 1.04760 1.04779 0.78995 0.67065 0.66912 0.64991 1.26097 1.06379 1.18500 1.04763 1.26191 1.06379 1.08256 1.15428 1.26625 1.07460 0.98683 1.17536 1.22798 1.00028 0.92079 0.85796 1.86442 1.68822 1.17433 1.45499 1.21761 0.89324 0.87073 0.90185 1.19052 1.00652 0.92889 0.94987 1.17911 0.93621 0.98347 0.95593 1.21139 0.92050 0.99504 0.98073 1.21154 1.00107 0.96703 0.95613 1.21353 0.95367 0.96427 0.98738 1.20947 0.93526 1.00263 0.97586 1.20262 0.96332 0.95967 0.95950 1.25306 0.99040 0.93151 1.02149 1.86679 1.71626 1.17107 1.58554 0.84835 0.78002 0.75518 0.81338 1.16216 1.16767 1.16974 1.22171 0.91723 0.93900 0.97980 1.22448 1.04067 0.96854 0.97168 1.17344 0.75462 0.84343 0.74764 1.93276 1.44621 1.96646 1.80047 1.93279 1.95263 1.88611 1.36705 1.93242 1.64285 1.77014 1.80249 1.72630 1.12055 0.97716 1.16487 1.73264 1.13486 1.03562 1.23874 0.91082 0.90873 0.91035 0.91112 0.90858 0.91079 0.91045 0.90878 0.91138 0.89263 0.89306 0.90442 0.90431 0.85433 0.85201 0.85288 0.84416 0.90397 0.78090 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.09 8.65 101.05 0.87 1.96 16 2 Si 1.03 -3.90 12.19 -169.99 -2.07 -5.97 16 3 C -0.45 1.21 8.65 101.05 0.87 2.08 16 4 C -0.46 1.04 8.65 101.05 0.87 1.91 16 5 C -0.42 1.19 4.82 37.16 0.18 1.37 16 6 C 0.07 -0.06 4.70 37.16 0.17 0.11 16 7 O -0.28 -0.21 8.28 -18.61 -0.15 -0.37 16 8 C 0.30 0.52 6.46 -16.58 -0.11 0.41 16 9 C -0.06 -0.06 3.48 -104.37 -0.36 -0.42 16 10 C -0.05 -0.02 4.79 -104.91 -0.50 -0.52 16 11 C -0.09 0.06 9.77 -39.25 -0.38 -0.32 16 12 C -0.12 0.15 10.03 -39.63 -0.40 -0.25 16 13 C -0.10 0.12 10.04 -39.51 -0.40 -0.28 16 14 C -0.11 0.05 9.34 -39.63 -0.37 -0.32 16 15 C -0.08 -0.03 4.41 -104.28 -0.46 -0.49 16 16 C -0.09 -0.04 2.39 36.00 0.09 0.05 16 17 O -0.53 0.06 11.30 -35.23 -0.40 -0.34 16 18 Si 0.99 1.39 27.28 -169.99 -4.64 -3.24 16 19 H -0.24 -0.49 7.11 56.52 0.40 -0.09 16 20 H -0.24 -0.59 7.11 56.52 0.40 -0.19 16 21 H -0.25 -0.20 5.35 56.52 0.30 0.11 16 22 C -0.03 -0.01 7.68 -38.90 -0.30 -0.31 16 23 C -0.06 -0.11 6.37 -82.48 -0.53 -0.64 16 24 C 0.54 0.97 3.44 36.00 0.12 1.09 16 25 F -0.16 -0.39 17.30 2.25 0.04 -0.35 16 26 F -0.16 -0.46 17.05 2.25 0.04 -0.42 16 27 F -0.17 -0.15 16.50 2.25 0.04 -0.11 16 28 N -0.14 -0.51 11.10 33.56 0.37 -0.14 16 29 N -0.28 -0.85 10.40 30.70 0.32 -0.53 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 36 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 37 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 39 H 0.09 -0.24 7.96 -51.93 -0.41 -0.66 16 40 H 0.09 -0.29 7.96 -51.93 -0.41 -0.70 16 41 H 0.08 -0.11 7.76 -51.93 -0.40 -0.51 16 42 H 0.08 -0.09 7.77 -51.93 -0.40 -0.50 16 43 H 0.13 -0.26 8.06 -52.49 -0.42 -0.69 16 44 H 0.13 -0.40 8.06 -52.48 -0.42 -0.82 16 45 H 0.13 -0.38 8.06 -52.49 -0.42 -0.81 16 46 H 0.14 -0.20 7.16 -52.49 -0.38 -0.57 16 47 H 0.08 0.02 5.08 -51.93 -0.26 -0.24 16 48 H 0.37 -1.23 9.09 45.56 0.41 -0.82 16 49 H 0.17 -0.37 7.67 -52.49 -0.40 -0.77 16 LS Contribution 420.62 15.07 6.34 6.34 Total: 0.00 -5.24 420.62 -6.86 -12.10 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: -6.13 Total: -12.43 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -0.62 Total: 5.45 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: 0.69 Total: -0.66 kcal Atomic # 8 Polarization: -0.15 SS G_CDS: -0.55 Total: -0.70 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.11 Total: -0.88 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: -6.71 Total: -9.21 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -5.24 -6.86 -12.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_17781646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.227 kcal (2) G-P(sol) polarization free energy of solvation -5.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds