Wall clock time and date at job start Mon Mar 8 2021 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.47446 * 2 1 4 4 C 1.86305 * 109.47074 * 239.99994 * 2 1 3 5 5 C 1.86303 * 109.47244 * 120.00082 * 2 1 3 6 6 C 1.53007 * 109.46758 * 59.99873 * 5 2 1 7 7 O 1.42897 * 109.46539 * 180.02562 * 6 5 2 8 8 C 1.35636 * 116.99712 * 180.02562 * 7 6 5 9 9 C 1.40325 * 120.22965 * 179.97438 * 8 7 6 10 10 C 1.48312 * 121.15641 * 359.94957 * 9 8 7 11 11 C 1.39355 * 120.12675 * 247.31120 * 10 9 8 12 12 C 1.38021 * 119.87436 * 179.69902 * 11 10 9 13 13 C 1.38309 * 120.12598 * 0.59920 * 12 11 10 14 14 C 1.38349 * 120.25024 * 359.67395 * 13 12 11 15 15 C 1.37995 * 120.12603 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.06583 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.46890 * 16.58150 * 16 15 14 18 18 Si 1.86293 * 109.47509 * 256.57887 * 16 15 14 19 19 H 1.48499 * 109.47150 * 59.99877 * 18 16 15 20 20 H 1.48494 * 109.47574 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46998 * 300.00063 * 18 16 15 22 22 C 1.39833 * 117.68474 * 179.97438 * 9 8 7 23 23 C 1.38476 * 117.88834 * 359.97438 * 22 9 8 24 24 C 1.50699 * 119.95096 * 180.02562 * 23 22 9 25 25 F 1.39896 * 109.47278 * 90.00057 * 24 23 22 26 26 F 1.39901 * 109.47123 * 210.00401 * 24 23 22 27 27 F 1.39900 * 109.47414 * 330.00397 * 24 23 22 28 28 N 1.31898 * 120.09730 * 0.02562 * 23 22 9 29 29 N 1.28282 * 122.56247 * 359.68648 * 28 23 22 30 30 H 1.08999 * 109.47314 * 299.99856 * 1 2 3 31 31 H 1.09002 * 109.46995 * 59.99769 * 1 2 3 32 32 H 1.09000 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47590 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46689 * 300.00045 * 3 2 1 35 35 H 1.08999 * 109.46747 * 59.99796 * 3 2 1 36 36 H 1.09000 * 109.46979 * 300.00304 * 4 2 1 37 37 H 1.09002 * 109.47016 * 60.00250 * 4 2 1 38 38 H 1.08995 * 109.47043 * 179.97438 * 4 2 1 39 39 H 1.08991 * 109.47174 * 179.97438 * 5 2 1 40 40 H 1.08999 * 109.47015 * 300.00244 * 5 2 1 41 41 H 1.08991 * 109.47056 * 299.99800 * 6 5 2 42 42 H 1.08999 * 109.47055 * 60.00395 * 6 5 2 43 43 H 1.08001 * 120.05903 * 359.97438 * 11 10 9 44 44 H 1.08003 * 119.93957 * 180.29463 * 12 11 10 45 45 H 1.07998 * 119.87952 * 179.70039 * 13 12 11 46 46 H 1.07994 * 119.94234 * 180.02562 * 14 13 12 47 47 H 1.09006 * 109.46755 * 136.57549 * 16 15 14 48 48 H 0.96706 * 114.00208 * 65.67009 * 17 16 15 49 49 H 1.08002 * 121.05449 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5211 7 8 2.4498 -2.9942 2.6881 8 6 2.0857 -4.2917 2.8418 9 6 2.5155 -5.0181 3.9629 10 6 3.3722 -4.3932 4.9998 11 6 4.6879 -4.8196 5.1701 12 6 5.4825 -4.2301 6.1325 13 6 4.9714 -3.2266 6.9354 14 6 3.6642 -2.8032 6.7746 15 6 2.8625 -3.3810 5.8115 16 6 1.4389 -2.9183 5.6371 17 8 1.2664 -1.6548 6.2819 18 14 0.2828 -4.1661 6.3968 19 1 0.5848 -4.3037 7.8442 20 1 -1.1199 -3.7105 6.2245 21 1 0.4621 -5.4792 5.7267 22 6 2.1083 -6.3517 4.0681 23 6 1.3090 -6.8663 3.0612 24 6 0.8430 -8.2978 3.1280 25 9 -0.3778 -8.3595 3.8084 26 9 0.6797 -8.7961 1.8310 27 9 1.7944 -9.0668 3.8067 28 7 0.9550 -6.1053 2.0437 29 7 1.3179 -4.8793 1.9393 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1207 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3644 -2.4112 38 1 3.5739 -0.8779 -1.5214 39 1 3.5739 -0.8786 1.5209 40 1 2.1206 -0.3645 2.4111 41 1 0.8840 -2.3207 1.5211 42 1 2.3373 -2.8346 0.6311 43 1 5.0864 -5.6067 4.5472 44 1 6.5038 -4.5565 6.2621 45 1 5.5952 -2.7715 7.6904 46 1 3.2703 -2.0189 7.4040 47 1 1.2173 -2.8173 4.5746 48 1 1.7737 -0.9359 5.8806 49 1 2.4071 -6.9608 4.9084 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651794_17781646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:08 Heat of formation + Delta-G solvation = -175.014036 kcal Electronic energy + Delta-G solvation = -36957.701787 eV Core-core repulsion = 31787.473337 eV Total energy + Delta-G solvation = -5170.228449 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 400.134 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.39011 -48.91377 -48.85253 -42.94271 -40.56702 -39.95122 -37.65551 -35.61064 -34.40541 -32.46345 -32.30581 -31.12045 -29.36013 -28.34030 -28.33387 -28.15017 -26.97318 -26.48331 -24.78290 -23.69989 -22.91363 -22.19956 -20.31117 -19.88824 -19.78755 -19.67568 -18.80789 -18.68597 -17.92633 -17.33084 -16.73427 -16.47130 -16.08974 -15.94759 -15.78569 -15.66047 -15.55486 -15.48441 -15.27076 -15.07326 -14.99152 -14.96819 -14.82416 -14.43357 -14.25445 -14.24071 -14.18912 -14.00601 -13.77605 -13.76205 -13.68310 -13.19903 -13.12510 -13.00577 -12.88663 -12.78669 -12.76490 -12.68817 -12.41485 -12.29205 -12.05953 -11.73158 -11.52381 -11.37508 -11.17148 -10.87930 -10.74519 -10.73719 -10.57753 -9.85131 -9.60169 -0.95160 -0.77332 0.11074 0.30917 1.00504 1.00838 1.21928 1.32013 1.35542 1.77479 1.78211 1.91511 1.96060 2.01744 2.22076 2.38798 2.60712 2.69501 2.82378 3.08472 3.08953 3.13680 3.45218 3.49181 3.56032 3.84872 3.90564 4.00558 4.03730 4.06705 4.17039 4.27073 4.37684 4.43853 4.48980 4.58652 4.79693 4.80696 4.82761 4.83761 4.84571 4.85971 4.86467 4.88305 5.00975 5.18689 5.35695 5.44448 5.53178 5.57027 5.64979 5.66084 5.76631 5.92322 6.59633 6.96608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.101 2.899 3 C -0.463 4.463 4 C -0.474 4.474 5 C -0.424 4.424 6 C 0.057 3.943 7 O -0.280 6.280 8 C 0.296 3.704 9 C -0.060 4.060 10 C -0.064 4.064 11 C -0.094 4.094 12 C -0.120 4.120 13 C -0.103 4.103 14 C -0.112 4.112 15 C -0.093 4.093 16 C -0.079 4.079 17 O -0.543 6.543 18 Si 0.985 3.015 19 H -0.249 1.249 20 H -0.265 1.265 21 H -0.240 1.240 22 C -0.030 4.030 23 C -0.061 4.061 24 C 0.541 3.459 25 F -0.169 7.169 26 F -0.166 7.166 27 F -0.159 7.159 28 N -0.169 5.169 29 N -0.299 5.299 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.077 0.923 48 H 0.386 0.614 49 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 4.065 1.749 6.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.290 2.710 3 C -0.570 4.570 4 C -0.579 4.579 5 C -0.505 4.505 6 C -0.017 4.017 7 O -0.183 6.183 8 C 0.112 3.888 9 C -0.072 4.072 10 C -0.065 4.065 11 C -0.112 4.112 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.094 4.094 16 C -0.189 4.189 17 O -0.351 6.351 18 Si 0.805 3.195 19 H -0.172 1.172 20 H -0.189 1.189 21 H -0.163 1.163 22 C -0.056 4.056 23 C -0.210 4.210 24 C 0.484 3.516 25 F -0.150 7.150 26 F -0.147 7.147 27 F -0.140 7.140 28 N -0.014 5.014 29 N -0.157 5.157 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.157 0.843 44 H 0.167 0.833 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.095 0.905 48 H 0.236 0.764 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.355 3.490 1.248 4.999 hybrid contribution 1.074 0.205 0.274 1.127 sum 4.429 3.695 1.521 5.965 Atomic orbital electron populations 1.26414 1.22298 1.04412 1.04738 0.77843 0.64877 0.65241 0.63028 1.26248 1.06575 1.19351 1.04789 1.26427 1.06556 1.08305 1.16645 1.26763 1.07711 0.97488 1.18568 1.23023 1.00354 0.92948 0.85394 1.86458 1.68779 1.16987 1.46109 1.21900 0.89142 0.87484 0.90284 1.19187 1.00333 0.92927 0.94782 1.17956 0.94065 0.98752 0.95683 1.21341 0.91671 0.99801 0.98378 1.21431 1.00921 0.96329 0.95045 1.21628 0.95240 0.96264 0.98959 1.21100 0.93908 1.00477 0.97471 1.20265 0.96198 0.96374 0.96560 1.25064 0.98977 0.93108 1.01714 1.86641 1.72160 1.17405 1.58858 0.84863 0.77217 0.76515 0.80930 1.17184 1.18904 1.16256 1.22451 0.90983 0.94067 0.98127 1.22503 1.04370 0.96700 0.97381 1.17310 0.75403 0.84426 0.74421 1.93265 1.44984 1.96678 1.80082 1.93258 1.95323 1.88739 1.37387 1.93252 1.63933 1.76838 1.80024 1.72548 1.13102 0.98210 1.17569 1.73188 1.14297 1.03541 1.24706 0.90953 0.91101 0.91549 0.91000 0.91071 0.90851 0.91577 0.91090 0.91111 0.88968 0.88518 0.90284 0.90486 0.84274 0.83317 0.83490 0.83788 0.90517 0.76395 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.06 8.65 113.37 0.98 3.04 16 2 Si 1.10 -8.44 12.19 68.60 0.84 -7.60 16 3 C -0.46 2.69 8.65 113.37 0.98 3.67 16 4 C -0.47 1.96 8.65 113.37 0.98 2.94 16 5 C -0.42 2.53 4.82 71.98 0.35 2.88 16 6 C 0.06 -0.08 4.70 71.98 0.34 0.25 16 7 O -0.28 -0.52 8.28 -89.50 -0.74 -1.26 16 8 C 0.30 1.20 6.46 85.14 0.55 1.75 16 9 C -0.06 -0.11 3.48 -19.70 -0.07 -0.18 16 10 C -0.06 -0.01 4.79 -20.05 -0.10 -0.10 16 11 C -0.09 0.24 9.77 22.49 0.22 0.46 16 12 C -0.12 0.51 10.03 22.24 0.22 0.73 16 13 C -0.10 0.41 10.04 22.31 0.22 0.63 16 14 C -0.11 0.21 9.34 22.24 0.21 0.42 16 15 C -0.09 -0.02 4.41 -19.64 -0.09 -0.10 16 16 C -0.08 -0.08 2.39 71.23 0.17 0.09 16 17 O -0.54 0.19 11.30 -148.98 -1.68 -1.49 16 18 Si 0.99 3.62 27.28 68.60 1.87 5.49 16 19 H -0.25 -1.23 7.11 99.48 0.71 -0.53 16 20 H -0.26 -1.77 7.11 99.48 0.71 -1.06 16 21 H -0.24 -0.52 5.35 99.48 0.53 0.01 16 22 C -0.03 -0.02 7.68 22.71 0.17 0.15 16 23 C -0.06 -0.28 6.37 42.61 0.27 -0.01 16 24 C 0.54 2.23 3.44 71.24 0.25 2.47 16 25 F -0.17 -0.90 17.30 44.97 0.78 -0.12 16 26 F -0.17 -1.12 17.05 44.97 0.77 -0.36 16 27 F -0.16 -0.25 16.50 44.97 0.74 0.49 16 28 N -0.17 -1.41 11.10 -47.72 -0.53 -1.94 16 29 N -0.30 -2.13 10.40 -169.68 -1.77 -3.89 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 33 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 34 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.07 -0.20 7.79 -2.39 -0.02 -0.21 16 37 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.09 -0.56 7.96 -2.39 -0.02 -0.58 16 40 H 0.10 -0.70 7.96 -2.39 -0.02 -0.72 16 41 H 0.08 -0.16 7.76 -2.39 -0.02 -0.18 16 42 H 0.08 -0.12 7.77 -2.39 -0.02 -0.14 16 43 H 0.14 -0.76 8.06 -2.91 -0.02 -0.78 16 44 H 0.15 -1.25 8.06 -2.91 -0.02 -1.27 16 45 H 0.15 -1.18 8.06 -2.91 -0.02 -1.20 16 46 H 0.14 -0.53 7.16 -2.91 -0.02 -0.55 16 47 H 0.08 0.08 5.08 -2.38 -0.01 0.07 16 48 H 0.39 -2.77 9.09 -74.05 -0.67 -3.44 16 49 H 0.20 -0.99 7.67 -2.91 -0.02 -1.02 16 Total: 0.00 -12.76 420.62 6.84 -5.92 By element: Atomic # 1 Polarization: -15.23 SS G_CDS: 0.90 Total: -14.33 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.66 Total: 19.09 kcal Atomic # 7 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -2.42 Total: -2.75 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 2.29 Total: 0.01 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: 2.71 Total: -2.11 kcal Total: -12.76 6.84 -5.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_17781646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.098 kcal (2) G-P(sol) polarization free energy of solvation -12.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds