Wall clock time and date at job start Mon Mar 8 2021 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.53002 * 109.46839 * 240.00063 * 2 1 3 5 5 Si 1.86299 * 109.47232 * 120.00413 * 2 1 3 6 6 C 1.86302 * 109.47051 * 299.99671 * 5 2 1 7 7 C 1.86303 * 109.46967 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47121 * 59.99726 * 5 2 1 9 9 C 1.42902 * 113.99683 * 180.02562 * 8 5 2 10 10 C 1.50705 * 109.46962 * 180.02562 * 9 8 5 11 11 C 1.33723 * 122.07435 * 359.97438 * 10 9 8 12 12 S 1.76252 * 108.21564 * 179.97438 * 11 10 9 13 13 C 1.76179 * 89.83748 * 0.02562 * 12 11 10 14 14 C 1.47871 * 125.47013 * 179.73576 * 13 12 11 15 15 C 1.39532 * 120.13812 * 180.02562 * 14 13 12 16 16 C 1.37993 * 119.85164 * 180.02562 * 15 14 13 17 17 C 1.38323 * 120.14519 * 0.02562 * 16 15 14 18 18 C 1.38375 * 120.28648 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.92912 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.46993 * 119.99990 * 19 18 17 21 21 Si 1.86305 * 109.46879 * 359.97438 * 19 18 17 22 22 H 1.48500 * 109.47039 * 60.00198 * 21 19 18 23 23 H 1.48497 * 109.46649 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47123 * 299.99866 * 21 19 18 25 25 C 1.37948 * 120.14351 * 359.72247 * 18 17 16 26 26 N 1.30221 * 109.05714 * 359.97438 * 13 12 11 27 27 H 1.09004 * 109.46849 * 299.99586 * 1 2 3 28 28 H 1.09001 * 109.47590 * 59.99645 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47172 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47194 * 300.00038 * 3 2 1 32 32 H 1.08996 * 109.47086 * 60.00751 * 3 2 1 33 33 H 1.09001 * 109.47654 * 299.99888 * 4 2 1 34 34 H 1.09001 * 109.47248 * 60.00079 * 4 2 1 35 35 H 1.09002 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46919 * 180.02562 * 6 5 2 37 37 H 1.09001 * 109.47078 * 299.99994 * 6 5 2 38 38 H 1.09002 * 109.47045 * 60.00321 * 6 5 2 39 39 H 1.09006 * 109.46779 * 299.99404 * 7 5 2 40 40 H 1.08991 * 109.47556 * 59.99879 * 7 5 2 41 41 H 1.09001 * 109.47325 * 179.97438 * 7 5 2 42 42 H 1.08996 * 109.47572 * 60.00089 * 9 8 5 43 43 H 1.09007 * 109.47032 * 299.99696 * 9 8 5 44 44 H 1.08001 * 125.89278 * 0.02562 * 11 10 9 45 45 H 1.07998 * 120.07427 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.92402 * 180.02562 * 16 15 14 47 47 H 1.08003 * 119.85832 * 180.02562 * 17 16 15 48 48 H 1.08999 * 109.47116 * 240.00220 * 19 18 17 49 49 H 0.96699 * 113.99829 * 299.99694 * 20 19 18 50 50 H 1.08001 * 120.07566 * 180.30153 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5214 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1815 2.6518 10 6 1.4722 -4.5782 2.5484 11 6 0.7075 -4.9638 1.5214 12 16 0.2636 -6.6515 1.7681 13 6 1.1789 -6.6670 3.2734 14 6 1.3186 -7.8262 4.1808 15 6 2.0729 -7.7142 5.3493 16 6 2.1998 -8.7999 6.1916 17 6 1.5817 -9.9973 5.8794 18 6 0.8323 -10.1149 4.7220 19 6 0.1629 -11.4234 4.3894 20 8 -1.2498 -11.2270 4.3021 21 14 0.5361 -12.6687 5.7239 22 1 0.0251 -12.1679 7.0252 23 1 -0.1240 -13.9579 5.3964 24 1 2.0043 -12.8726 5.8141 25 6 0.6924 -9.0353 3.8747 26 7 1.7084 -5.4922 3.4611 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.8938 -0.5138 3.9322 37 1 1.8935 1.0275 3.0423 38 1 0.4401 -0.0001 3.0423 39 1 4.3777 -1.3912 0.6313 40 1 4.3770 0.1501 1.5216 41 1 4.3775 -1.3911 2.4115 42 1 1.6638 -2.7114 3.5651 43 1 3.1175 -3.2253 2.6756 44 1 0.4133 -4.3475 0.6846 45 1 2.5563 -6.7800 5.5940 46 1 2.7830 -8.7144 7.0966 47 1 1.6838 -10.8439 6.5421 48 1 0.5384 -11.7912 3.4345 49 1 -1.6526 -10.8998 5.1180 50 1 0.1033 -9.1269 2.9742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651798_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:17 Heat of formation + Delta-G solvation = -63.800630 kcal Electronic energy + Delta-G solvation = -27601.893780 eV Core-core repulsion = 23843.890372 eV Total energy + Delta-G solvation = -3758.003409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07273 -40.31927 -37.95701 -37.53883 -36.89116 -33.67603 -32.43723 -30.70846 -29.53052 -29.13414 -27.98546 -27.90504 -27.42884 -26.83537 -25.80759 -23.31131 -22.25542 -20.50364 -20.03908 -19.25278 -18.46456 -17.62601 -17.32826 -16.74194 -16.65977 -16.44933 -16.27883 -15.98644 -15.72004 -15.21777 -15.14482 -14.91326 -14.90081 -14.74692 -14.58369 -14.06797 -13.95382 -13.74040 -13.70431 -13.50718 -13.43923 -13.27836 -13.02596 -12.98004 -12.97482 -12.75554 -12.46400 -12.34214 -12.25400 -12.09582 -12.01366 -11.77694 -11.67393 -11.66284 -11.47563 -10.80666 -10.70919 -10.52524 -10.47837 -10.15946 -10.13306 -9.91948 -9.12850 -0.73958 0.24003 0.33374 0.49605 0.75793 1.09411 1.28037 1.39319 1.46678 1.67694 1.81561 1.87012 1.99790 2.31983 2.70382 2.94218 3.41190 3.57756 3.77851 3.88284 3.97846 4.06509 4.06846 4.16405 4.23112 4.30150 4.34979 4.41749 4.46736 4.49380 4.52829 4.64173 4.69214 4.69629 4.70339 4.75223 4.77017 4.80689 4.88737 4.95089 5.02531 5.05465 5.06042 5.14257 5.25358 5.30806 5.31845 5.36732 5.37326 5.40262 5.44684 5.50950 5.56226 5.78686 6.49180 6.70893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.294 2.706 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.164 3.836 10 C 0.054 3.946 11 C -0.210 4.210 12 S 0.095 5.905 13 C 0.112 3.888 14 C -0.026 4.026 15 C -0.067 4.067 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.081 4.081 20 O -0.537 6.537 21 Si 0.950 3.050 22 H -0.250 1.250 23 H -0.253 1.253 24 H -0.249 1.249 25 C -0.069 4.069 26 N -0.459 5.459 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.190 0.810 45 H 0.139 0.861 46 H 0.134 0.866 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.377 0.623 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -0.021 1.371 1.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.086 3.914 10 C -0.078 4.078 11 C -0.349 4.349 12 S 0.351 5.649 13 C -0.162 4.162 14 C -0.030 4.030 15 C -0.088 4.088 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.192 4.192 20 O -0.342 6.342 21 Si 0.773 3.227 22 H -0.174 1.174 23 H -0.177 1.177 24 H -0.173 1.173 25 C -0.089 4.089 26 N -0.174 5.174 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.207 0.793 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.225 0.775 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.511 -1.611 1.069 2.000 hybrid contribution 0.416 1.961 0.233 2.018 sum 0.928 0.350 1.302 1.637 Atomic orbital electron populations 1.21515 0.93777 1.01966 1.01868 1.25777 1.00694 1.02683 1.12611 1.21553 1.00817 0.94829 1.02204 1.21515 1.00669 1.00164 0.96778 0.76611 0.63026 0.52779 0.65059 1.27037 1.07074 1.09561 1.17742 1.27036 1.24917 1.04851 1.04609 1.85234 1.79606 1.46227 1.47426 1.20151 0.97940 0.86074 0.87273 1.19845 1.00232 0.96377 0.91322 1.26859 1.05350 0.97173 1.05544 1.85103 1.49804 1.09426 1.20517 1.25643 0.99368 0.94472 0.96756 1.17832 1.00710 0.90103 0.94311 1.21348 0.95995 0.99392 0.92099 1.21109 0.99694 0.92336 0.99959 1.21229 0.97120 0.98270 0.96184 1.20178 0.99884 0.96470 0.95372 1.25009 0.83792 0.99112 1.11288 1.86525 1.18181 1.88889 1.40643 0.85668 0.81132 0.78591 0.77321 1.17384 1.17674 1.17318 1.20985 0.97556 0.90953 0.99417 1.66107 1.22647 0.99745 1.28872 0.92644 0.92763 0.92230 0.92470 0.92461 0.92465 0.92228 0.92763 0.92648 0.91339 0.90602 0.90807 0.90811 0.90601 0.91339 0.90485 0.90495 0.79311 0.84356 0.84772 0.85777 0.86186 0.77542 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.28 0.53 -90.62 -0.05 0.23 16 3 C -0.14 0.13 7.85 37.16 0.29 0.42 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -1.84 8.45 -169.99 -1.44 -3.28 16 6 C -0.51 0.47 8.50 101.05 0.86 1.33 16 7 C -0.51 0.47 8.50 101.05 0.86 1.33 16 8 O -0.63 0.02 7.41 -35.23 -0.26 -0.24 16 9 C 0.16 0.06 5.72 36.01 0.21 0.27 16 10 C 0.05 0.13 6.69 -84.40 -0.56 -0.43 16 11 C -0.21 -0.37 10.52 29.15 0.31 -0.06 16 12 S 0.09 0.14 22.40 -107.50 -2.41 -2.27 16 13 C 0.11 0.30 7.35 -14.29 -0.11 0.20 16 14 C -0.03 -0.05 5.87 -104.98 -0.62 -0.66 16 15 C -0.07 -0.06 9.68 -39.19 -0.38 -0.44 16 16 C -0.11 0.05 10.03 -39.64 -0.40 -0.34 16 17 C -0.11 0.05 8.67 -39.50 -0.34 -0.29 16 18 C -0.12 0.01 5.39 -104.68 -0.56 -0.56 16 19 C -0.08 0.08 2.82 36.01 0.10 0.19 16 20 O -0.54 0.15 12.76 -35.23 -0.45 -0.30 16 21 Si 0.95 -1.20 25.06 -169.99 -4.26 -5.46 16 22 H -0.25 0.29 7.11 56.52 0.40 0.69 16 23 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 24 H -0.25 0.20 7.11 56.52 0.40 0.60 16 25 C -0.07 -0.06 9.16 -39.19 -0.36 -0.42 16 26 N -0.46 -1.52 10.11 -7.55 -0.08 -1.60 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 30 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 33 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 37 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 42 H 0.08 -0.06 7.21 -51.93 -0.37 -0.43 16 43 H 0.08 -0.06 7.22 -51.93 -0.37 -0.43 16 44 H 0.19 0.07 7.51 -52.49 -0.39 -0.32 16 45 H 0.14 0.07 7.82 -52.49 -0.41 -0.34 16 46 H 0.13 -0.35 8.06 -52.49 -0.42 -0.77 16 47 H 0.12 -0.24 4.86 -52.48 -0.26 -0.49 16 48 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 49 H 0.38 -1.29 8.70 45.56 0.40 -0.89 16 50 H 0.13 0.05 7.30 -52.49 -0.38 -0.33 16 LS Contribution 414.79 15.07 6.25 6.25 Total: 0.00 -5.01 414.79 -10.35 -15.36 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -7.54 Total: -9.91 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.17 Total: 1.45 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Atomic # 8 Polarization: 0.17 SS G_CDS: -0.71 Total: -0.54 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: -5.70 Total: -8.74 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.41 Total: -2.27 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -5.01 -10.35 -15.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.444 kcal (2) G-P(sol) polarization free energy of solvation -5.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds