Wall clock time and date at job start Mon Mar 8 2021 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.53002 * 109.46839 * 240.00063 * 2 1 3 5 5 Si 1.86299 * 109.47232 * 120.00413 * 2 1 3 6 6 C 1.86302 * 109.47051 * 299.99671 * 5 2 1 7 7 C 1.86303 * 109.46967 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47121 * 59.99726 * 5 2 1 9 9 C 1.42902 * 113.99683 * 180.02562 * 8 5 2 10 10 C 1.50705 * 109.46962 * 180.02562 * 9 8 5 11 11 C 1.33723 * 122.07435 * 359.97438 * 10 9 8 12 12 S 1.76252 * 108.21564 * 179.97438 * 11 10 9 13 13 C 1.76179 * 89.83748 * 0.02562 * 12 11 10 14 14 C 1.47871 * 125.47013 * 179.73576 * 13 12 11 15 15 C 1.39532 * 120.13812 * 180.02562 * 14 13 12 16 16 C 1.37993 * 119.85164 * 180.02562 * 15 14 13 17 17 C 1.38323 * 120.14519 * 0.02562 * 16 15 14 18 18 C 1.38375 * 120.28648 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.92912 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.46993 * 119.99990 * 19 18 17 21 21 Si 1.86305 * 109.46879 * 359.97438 * 19 18 17 22 22 H 1.48500 * 109.47039 * 60.00198 * 21 19 18 23 23 H 1.48497 * 109.46649 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47123 * 299.99866 * 21 19 18 25 25 C 1.37948 * 120.14351 * 359.72247 * 18 17 16 26 26 N 1.30221 * 109.05714 * 359.97438 * 13 12 11 27 27 H 1.09004 * 109.46849 * 299.99586 * 1 2 3 28 28 H 1.09001 * 109.47590 * 59.99645 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47172 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47194 * 300.00038 * 3 2 1 32 32 H 1.08996 * 109.47086 * 60.00751 * 3 2 1 33 33 H 1.09001 * 109.47654 * 299.99888 * 4 2 1 34 34 H 1.09001 * 109.47248 * 60.00079 * 4 2 1 35 35 H 1.09002 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46919 * 180.02562 * 6 5 2 37 37 H 1.09001 * 109.47078 * 299.99994 * 6 5 2 38 38 H 1.09002 * 109.47045 * 60.00321 * 6 5 2 39 39 H 1.09006 * 109.46779 * 299.99404 * 7 5 2 40 40 H 1.08991 * 109.47556 * 59.99879 * 7 5 2 41 41 H 1.09001 * 109.47325 * 179.97438 * 7 5 2 42 42 H 1.08996 * 109.47572 * 60.00089 * 9 8 5 43 43 H 1.09007 * 109.47032 * 299.99696 * 9 8 5 44 44 H 1.08001 * 125.89278 * 0.02562 * 11 10 9 45 45 H 1.07998 * 120.07427 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.92402 * 180.02562 * 16 15 14 47 47 H 1.08003 * 119.85832 * 180.02562 * 17 16 15 48 48 H 1.08999 * 109.47116 * 240.00220 * 19 18 17 49 49 H 0.96699 * 113.99829 * 299.99694 * 20 19 18 50 50 H 1.08001 * 120.07566 * 180.30153 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5214 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1815 2.6518 10 6 1.4722 -4.5782 2.5484 11 6 0.7075 -4.9638 1.5214 12 16 0.2636 -6.6515 1.7681 13 6 1.1789 -6.6670 3.2734 14 6 1.3186 -7.8262 4.1808 15 6 2.0729 -7.7142 5.3493 16 6 2.1998 -8.7999 6.1916 17 6 1.5817 -9.9973 5.8794 18 6 0.8323 -10.1149 4.7220 19 6 0.1629 -11.4234 4.3894 20 8 -1.2498 -11.2270 4.3021 21 14 0.5361 -12.6687 5.7239 22 1 0.0251 -12.1679 7.0252 23 1 -0.1240 -13.9579 5.3964 24 1 2.0043 -12.8726 5.8141 25 6 0.6924 -9.0353 3.8747 26 7 1.7084 -5.4922 3.4611 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.8938 -0.5138 3.9322 37 1 1.8935 1.0275 3.0423 38 1 0.4401 -0.0001 3.0423 39 1 4.3777 -1.3912 0.6313 40 1 4.3770 0.1501 1.5216 41 1 4.3775 -1.3911 2.4115 42 1 1.6638 -2.7114 3.5651 43 1 3.1175 -3.2253 2.6756 44 1 0.4133 -4.3475 0.6846 45 1 2.5563 -6.7800 5.5940 46 1 2.7830 -8.7144 7.0966 47 1 1.6838 -10.8439 6.5421 48 1 0.5384 -11.7912 3.4345 49 1 -1.6526 -10.8998 5.1180 50 1 0.1033 -9.1269 2.9742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651798_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:16 Heat of formation + Delta-G solvation = -54.703980 kcal Electronic energy + Delta-G solvation = -27601.499320 eV Core-core repulsion = 23843.890372 eV Total energy + Delta-G solvation = -3757.608949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.13543 -40.33441 -37.93371 -37.49584 -36.83130 -33.69505 -32.41307 -30.76270 -29.45059 -29.06058 -28.02815 -27.83320 -27.37411 -26.78590 -25.85455 -23.29415 -22.27742 -20.46053 -20.10907 -19.30276 -18.43762 -17.59641 -17.29552 -16.78385 -16.67950 -16.43333 -16.20790 -15.95759 -15.68696 -15.20849 -15.18139 -14.88049 -14.83956 -14.70484 -14.54505 -14.02369 -14.00033 -13.72801 -13.66657 -13.47431 -13.36228 -13.18415 -12.99599 -12.94857 -12.91508 -12.74121 -12.39995 -12.37528 -12.15638 -12.04677 -11.97197 -11.72941 -11.61648 -11.60878 -11.43726 -10.86078 -10.84333 -10.46082 -10.44583 -10.22050 -10.07061 -9.90277 -9.19713 -0.82665 0.22522 0.24909 0.45194 0.64774 1.19221 1.36283 1.49958 1.55026 1.71137 1.77220 1.94872 2.10624 2.38811 2.69469 2.90173 3.52836 3.64847 3.76037 3.92505 4.01981 4.11870 4.12930 4.18041 4.20068 4.28962 4.38381 4.45970 4.46125 4.50404 4.58039 4.74231 4.76230 4.77840 4.78212 4.79168 4.83466 4.83836 4.93407 4.97673 5.01070 5.10084 5.10556 5.18584 5.28429 5.33803 5.36252 5.37795 5.41439 5.41961 5.47439 5.59900 5.64794 5.81484 6.58831 6.71291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.325 2.675 6 C -0.520 4.520 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.160 3.840 10 C 0.041 3.959 11 C -0.218 4.218 12 S 0.104 5.896 13 C 0.101 3.899 14 C -0.042 4.042 15 C -0.076 4.076 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.082 4.082 20 O -0.553 6.553 21 Si 0.984 3.016 22 H -0.248 1.248 23 H -0.278 1.278 24 H -0.253 1.253 25 C -0.076 4.076 26 N -0.476 5.476 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.199 0.801 45 H 0.138 0.862 46 H 0.157 0.843 47 H 0.140 0.860 48 H 0.125 0.875 49 H 0.390 0.610 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -0.160 2.167 2.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.456 2.544 6 C -0.621 4.621 7 C -0.621 4.621 8 O -0.593 6.593 9 C 0.081 3.919 10 C -0.091 4.091 11 C -0.357 4.357 12 S 0.361 5.639 13 C -0.173 4.173 14 C -0.046 4.046 15 C -0.098 4.098 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.192 4.192 20 O -0.360 6.360 21 Si 0.808 3.192 22 H -0.171 1.171 23 H -0.203 1.203 24 H -0.177 1.177 25 C -0.097 4.097 26 N -0.191 5.191 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.216 0.784 45 H 0.155 0.845 46 H 0.175 0.825 47 H 0.158 0.842 48 H 0.143 0.857 49 H 0.239 0.761 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.887 -1.729 1.864 2.692 hybrid contribution 0.276 1.974 -0.022 1.994 sum 1.163 0.246 1.842 2.192 Atomic orbital electron populations 1.21550 0.94190 1.01861 1.01857 1.25882 1.00414 1.02992 1.12927 1.21606 1.01327 0.94659 1.02264 1.21551 1.01028 1.00065 0.96816 0.76055 0.62349 0.51889 0.64129 1.27116 1.06917 1.09988 1.18116 1.27116 1.25303 1.05138 1.04581 1.85220 1.79860 1.46752 1.47438 1.20277 0.98514 0.85301 0.87764 1.20198 1.00439 0.97151 0.91329 1.27046 1.05407 0.97417 1.05840 1.84993 1.49506 1.09396 1.20007 1.25919 0.99423 0.94702 0.97283 1.17976 1.01625 0.90188 0.94786 1.21451 0.96167 0.99948 0.92213 1.21379 0.99380 0.91771 1.00347 1.21466 0.96619 0.98807 0.96142 1.20317 0.99798 0.96505 0.95341 1.25105 0.83467 0.98716 1.11959 1.86493 1.18572 1.89009 1.41891 0.85190 0.80319 0.76813 0.76886 1.17117 1.20303 1.17659 1.21038 0.97787 0.91079 0.99756 1.66138 1.23326 1.00152 1.29505 0.92135 0.93326 0.92388 0.91775 0.93095 0.91768 0.92385 0.93326 0.92141 0.91090 0.90184 0.91133 0.91139 0.90183 0.91092 0.89471 0.89486 0.78361 0.84460 0.82528 0.84211 0.85692 0.76123 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.05 7.85 71.98 0.56 0.61 16 2 C -0.38 0.51 0.53 -10.79 -0.01 0.50 16 3 C -0.14 0.27 7.85 71.98 0.56 0.84 16 4 C -0.14 0.05 7.85 71.98 0.56 0.61 16 5 Si 1.33 -3.98 8.45 68.60 0.58 -3.40 16 6 C -0.52 1.15 8.50 113.37 0.96 2.11 16 7 C -0.52 1.14 8.50 113.37 0.96 2.10 16 8 O -0.63 0.00 7.41 -148.98 -1.10 -1.10 16 9 C 0.16 0.15 5.72 71.24 0.41 0.56 16 10 C 0.04 0.22 6.69 41.61 0.28 0.50 16 11 C -0.22 -0.92 10.52 66.79 0.70 -0.21 16 12 S 0.10 0.40 22.40 -56.49 -1.27 -0.87 16 13 C 0.10 0.64 7.35 87.48 0.64 1.29 16 14 C -0.04 -0.18 5.87 -20.09 -0.12 -0.30 16 15 C -0.08 -0.15 9.68 22.52 0.22 0.06 16 16 C -0.11 0.18 10.03 22.23 0.22 0.41 16 17 C -0.11 0.20 8.67 22.32 0.19 0.39 16 18 C -0.12 0.04 5.39 -19.90 -0.11 -0.07 16 19 C -0.08 0.19 2.82 71.24 0.20 0.39 16 20 O -0.55 0.34 12.76 -148.98 -1.90 -1.56 16 21 Si 0.98 -3.04 25.06 68.60 1.72 -1.32 16 22 H -0.25 0.88 7.11 99.48 0.71 1.59 16 23 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 24 H -0.25 0.65 7.11 99.48 0.71 1.36 16 25 C -0.08 -0.17 9.16 22.52 0.21 0.03 16 26 N -0.48 -3.58 10.11 -177.79 -1.80 -5.38 16 27 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 28 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.06 -0.01 7.97 -2.39 -0.02 -0.03 16 30 H 0.06 -0.22 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 -0.01 7.97 -2.39 -0.02 -0.03 16 34 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 36 H 0.07 -0.18 7.48 -2.39 -0.02 -0.20 16 37 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 38 H 0.07 -0.10 7.79 -2.39 -0.02 -0.11 16 39 H 0.07 -0.09 7.79 -2.38 -0.02 -0.11 16 40 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 41 H 0.07 -0.18 7.48 -2.39 -0.02 -0.20 16 42 H 0.09 -0.13 7.21 -2.39 -0.02 -0.15 16 43 H 0.09 -0.13 7.22 -2.38 -0.02 -0.15 16 44 H 0.20 0.26 7.51 -2.91 -0.02 0.24 16 45 H 0.14 0.23 7.82 -2.91 -0.02 0.21 16 46 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 47 H 0.14 -0.74 4.86 -2.91 -0.01 -0.75 16 48 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 49 H 0.39 -2.72 8.70 -74.06 -0.64 -3.36 16 50 H 0.13 0.22 7.30 -2.91 -0.02 0.20 16 Total: 0.00 -11.41 414.79 3.73 -7.68 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: 1.04 Total: -3.87 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.46 Total: 9.82 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: -1.80 Total: -5.38 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -3.01 Total: -2.66 kcal Atomic # 14 Polarization: -7.02 SS G_CDS: 2.30 Total: -4.72 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.27 Total: -0.87 kcal Total: -11.41 3.73 -7.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.029 kcal (2) G-P(sol) polarization free energy of solvation -11.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds