Wall clock time and date at job start Mon Mar 8 2021 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86292 * 109.46808 * 2 1 4 4 C 1.50702 * 109.46847 * 239.99850 * 2 1 3 5 5 C 1.37993 * 119.94353 * 300.00252 * 4 2 1 6 6 C 1.39357 * 119.88065 * 180.02562 * 5 4 2 7 7 C 1.48394 * 120.12328 * 180.02562 * 6 5 4 8 8 C 1.39336 * 120.11635 * 359.69528 * 7 6 5 9 9 C 1.38021 * 119.87145 * 179.76705 * 8 7 6 10 10 C 1.38316 * 120.12188 * 0.49137 * 9 8 7 11 11 C 1.50704 * 119.87779 * 179.76282 * 10 9 8 12 12 H 1.08999 * 112.84661 * 168.82995 * 11 10 9 13 13 C 1.53780 * 113.61333 * 300.02160 * 11 10 9 14 14 C 1.53785 * 87.07801 * 139.98081 * 13 11 10 15 15 H 1.09003 * 113.61437 * 89.20236 * 14 13 11 16 16 O 1.42899 * 113.61439 * 220.01613 * 14 13 11 17 17 C 1.53775 * 113.61365 * 37.52096 * 11 10 9 18 18 C 1.38326 * 120.24652 * 359.78786 * 10 9 8 19 19 C 1.38016 * 120.11818 * 359.95793 * 18 10 9 20 20 C 1.39321 * 119.75522 * 359.97438 * 6 5 4 21 21 C 1.38043 * 119.87797 * 0.28248 * 20 6 5 22 22 C 1.38301 * 120.11839 * 359.43864 * 21 20 6 23 23 H 0.96699 * 113.99985 * 60.00375 * 1 2 3 24 24 H 1.08994 * 109.46982 * 120.00212 * 2 1 3 25 25 H 1.48494 * 110.00296 * 298.67864 * 3 2 1 26 26 H 1.48495 * 110.00189 * 60.00341 * 3 2 1 27 27 H 1.08000 * 120.05730 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.06451 * 0.02562 * 8 7 6 29 29 H 1.08005 * 119.93734 * 180.25514 * 9 8 7 30 30 H 1.09002 * 113.61885 * 254.52852 * 13 11 10 31 31 H 1.09001 * 113.61534 * 25.43888 * 13 11 10 32 32 H 0.96709 * 113.99899 * 179.97438 * 16 14 13 33 33 H 1.09000 * 113.61729 * 334.56469 * 17 11 10 34 34 H 1.09007 * 113.61122 * 105.47066 * 17 11 10 35 35 H 1.07993 * 119.94233 * 179.97438 * 18 10 9 36 36 H 1.07995 * 120.06205 * 180.02562 * 19 18 10 37 37 H 1.08002 * 120.05673 * 179.97438 * 20 6 5 38 38 H 1.08004 * 119.93623 * 179.72472 * 21 20 6 39 39 H 1.08001 * 119.87433 * 180.26052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 1.5972 -2.0316 -1.4477 6 6 2.0628 -2.6874 -2.5857 7 6 1.7063 -4.1079 -2.8249 8 6 0.9100 -4.7926 -1.9092 9 6 0.5775 -6.1123 -2.1391 10 6 1.0416 -6.7580 -3.2708 11 6 0.6796 -8.2006 -3.5137 12 1 0.9364 -8.5381 -4.5178 13 6 1.1576 -9.1511 -2.4033 14 6 -0.1874 -9.8806 -2.5573 15 1 -0.1685 -10.6792 -3.2990 16 8 -0.7616 -10.2909 -1.3147 17 6 -0.7558 -8.5551 -3.0908 18 6 1.8373 -6.0848 -4.1802 19 6 2.1716 -4.7635 -3.9630 20 6 2.8634 -2.0043 -3.4986 21 6 3.1959 -0.6843 -3.2687 22 6 2.7263 -0.0368 -2.1405 23 1 -0.3933 0.4416 -0.7651 24 1 1.7924 -0.5138 0.8899 25 1 1.5879 2.4585 -1.2242 26 1 1.5615 2.4678 1.2085 27 1 0.9766 -2.5565 -0.7365 28 1 0.5502 -4.2904 -1.0233 29 1 -0.0431 -6.6428 -1.4321 30 1 2.0181 -9.7569 -2.6874 31 1 1.2821 -8.6646 -1.4358 32 1 -1.6079 -10.7501 -1.4051 33 1 -1.1543 -7.9058 -2.3113 34 1 -1.4400 -8.6798 -3.9302 35 1 2.1973 -6.5939 -5.0620 36 1 2.7925 -4.2386 -4.6738 37 1 3.2273 -2.5079 -4.3819 38 1 3.8202 -0.1551 -3.9735 39 1 2.9854 0.9972 -1.9666 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651798_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:14 Heat of formation + Delta-G solvation = -4.945871 kcal Electronic energy + Delta-G solvation = -20950.613990 eV Core-core repulsion = 17790.029818 eV Total energy + Delta-G solvation = -3160.584172 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35127 -40.57597 -39.11114 -37.65002 -36.09323 -33.66072 -32.67626 -31.69556 -30.20038 -26.87734 -26.73048 -26.04770 -24.18824 -23.44163 -22.24001 -21.51129 -20.22177 -18.97620 -18.52517 -17.67253 -17.12074 -16.70716 -16.55784 -16.25889 -15.97004 -15.58736 -15.22525 -15.12967 -14.88112 -14.53283 -14.29038 -14.14107 -13.98323 -13.56228 -13.45638 -13.37525 -13.05124 -12.59991 -12.49446 -12.30982 -12.04535 -11.98164 -11.74019 -11.46477 -11.39458 -10.78310 -10.62646 -10.48099 -9.87629 -9.84256 -8.89214 -4.96396 -0.31734 0.33525 0.48944 0.88566 1.27988 1.59468 1.95817 2.54965 3.03121 3.19058 3.34628 3.51419 3.56847 3.61309 3.66081 3.81571 3.87427 3.91037 3.94668 4.05807 4.09698 4.17381 4.28812 4.34809 4.45274 4.49144 4.53832 4.69134 4.74496 4.77122 4.84903 4.92114 4.93900 5.04572 5.05268 5.16118 5.25465 5.32917 5.36630 5.44418 5.54756 5.71170 5.77013 5.93358 6.04121 6.39057 6.67894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.076 4.076 3 Si 0.685 3.315 4 C -0.115 4.115 5 C -0.085 4.085 6 C -0.043 4.043 7 C -0.051 4.051 8 C -0.105 4.105 9 C -0.112 4.112 10 C -0.066 4.066 11 C -0.074 4.074 12 H 0.101 0.899 13 C -0.119 4.119 14 C 0.074 3.926 15 H 0.083 0.917 16 O -0.560 6.560 17 C -0.163 4.163 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.117 4.117 23 H 0.376 0.624 24 H 0.119 0.881 25 H -0.260 1.260 26 H -0.257 1.257 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.379 0.621 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -0.781 -2.766 3.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.185 4.185 3 Si 0.587 3.413 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.043 4.043 7 C -0.051 4.051 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.066 4.066 11 C -0.092 4.092 12 H 0.119 0.881 13 C -0.157 4.157 14 C 0.015 3.985 15 H 0.101 0.899 16 O -0.365 6.365 17 C -0.201 4.201 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.134 4.134 23 H 0.224 0.776 24 H 0.136 0.864 25 H -0.185 1.185 26 H -0.182 1.182 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.227 0.773 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.108 0.025 -1.973 2.887 hybrid contribution -1.544 -0.430 -0.898 1.837 sum 0.563 -0.405 -2.871 2.953 Atomic orbital electron populations 1.86600 1.17672 1.79981 1.49329 1.25050 0.83997 1.11056 0.98442 0.94967 0.91746 0.74391 0.80235 1.20207 0.99378 0.94915 0.97051 1.21073 0.98766 0.93707 0.96743 1.18830 0.97918 0.92478 0.95031 1.18752 0.98681 0.92253 0.95452 1.21234 0.97665 0.94475 0.98936 1.20974 1.00190 0.94477 0.97367 1.19695 0.97272 0.94877 0.94734 1.21314 0.96985 0.91320 0.99603 0.88052 1.23174 0.96191 0.96916 0.99399 1.23364 0.94744 0.94138 0.86207 0.89895 1.86539 1.40692 1.79142 1.30176 1.23836 0.96153 0.98436 1.01651 1.20987 0.98414 0.94370 0.99323 1.21205 0.99727 0.94661 0.96849 1.21304 0.97571 0.94575 0.98978 1.21068 0.99789 0.94599 0.97379 1.21078 0.98118 0.99597 0.94625 0.77634 0.86358 1.18498 1.18214 0.85351 0.85637 0.85623 0.90485 0.88855 0.77333 0.88764 0.90927 0.85746 0.85627 0.85451 0.85245 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.85 12.77 -35.23 -0.45 -1.30 16 2 C -0.08 -0.01 2.82 36.01 0.10 0.09 16 3 Si 0.69 -0.47 29.78 -169.99 -5.06 -5.53 16 4 C -0.12 -0.08 5.39 -104.67 -0.56 -0.64 16 5 C -0.08 -0.13 8.99 -39.25 -0.35 -0.48 16 6 C -0.04 -0.07 5.88 -104.90 -0.62 -0.69 16 7 C -0.05 -0.10 5.88 -104.90 -0.62 -0.71 16 8 C -0.11 -0.17 9.43 -39.25 -0.37 -0.54 16 9 C -0.11 -0.15 8.59 -39.63 -0.34 -0.49 16 10 C -0.07 -0.06 5.29 -104.56 -0.55 -0.61 16 11 C -0.07 0.04 3.98 -90.96 -0.36 -0.33 16 12 H 0.10 -0.16 8.09 -51.93 -0.42 -0.58 16 13 C -0.12 -0.01 7.38 -25.92 -0.19 -0.20 16 14 C 0.07 -0.03 5.21 -25.92 -0.14 -0.17 16 15 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 16 O -0.56 -0.48 13.67 -35.23 -0.48 -0.96 16 17 C -0.16 0.10 7.28 -25.92 -0.19 -0.09 16 18 C -0.11 -0.07 9.69 -39.63 -0.38 -0.46 16 19 C -0.11 -0.10 9.43 -39.25 -0.37 -0.47 16 20 C -0.11 -0.06 9.43 -39.25 -0.37 -0.43 16 21 C -0.11 0.02 10.03 -39.63 -0.40 -0.38 16 22 C -0.12 0.01 8.67 -39.52 -0.34 -0.33 16 23 H 0.38 -0.41 8.70 45.56 0.40 -0.02 16 24 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 25 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 26 H -0.26 -0.68 7.11 56.52 0.40 -0.27 16 27 H 0.13 0.15 6.21 -52.49 -0.33 -0.18 16 28 H 0.13 0.07 6.21 -52.49 -0.33 -0.26 16 29 H 0.13 0.06 6.65 -52.48 -0.35 -0.28 16 30 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 31 H 0.09 0.12 7.72 -51.93 -0.40 -0.28 16 32 H 0.38 -1.21 9.12 45.56 0.42 -0.79 16 33 H 0.09 0.01 6.30 -51.93 -0.33 -0.32 16 34 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 35 H 0.12 -0.15 8.05 -52.49 -0.42 -0.57 16 36 H 0.13 -0.11 6.21 -52.49 -0.33 -0.43 16 37 H 0.13 -0.15 6.21 -52.49 -0.33 -0.48 16 38 H 0.13 -0.30 8.06 -52.48 -0.42 -0.72 16 39 H 0.13 -0.24 4.87 -52.49 -0.26 -0.49 16 LS Contribution 318.54 15.07 4.80 4.80 Total: 0.00 -6.32 318.54 -11.21 -17.54 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: -3.97 Total: -7.62 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -6.05 Total: -6.93 kcal Atomic # 8 Polarization: -1.33 SS G_CDS: -0.93 Total: -2.26 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -5.06 Total: -5.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -6.32 -11.21 -17.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.593 kcal (2) G-P(sol) polarization free energy of solvation -6.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds