Wall clock time and date at job start Mon Mar 8 2021 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86292 * 109.46808 * 2 1 4 4 C 1.50702 * 109.46847 * 239.99850 * 2 1 3 5 5 C 1.37993 * 119.94353 * 300.00252 * 4 2 1 6 6 C 1.39357 * 119.88065 * 180.02562 * 5 4 2 7 7 C 1.48394 * 120.12328 * 180.02562 * 6 5 4 8 8 C 1.39336 * 120.11635 * 359.69528 * 7 6 5 9 9 C 1.38021 * 119.87145 * 179.76705 * 8 7 6 10 10 C 1.38316 * 120.12188 * 0.49137 * 9 8 7 11 11 C 1.50704 * 119.87779 * 179.76282 * 10 9 8 12 12 H 1.08999 * 112.84661 * 168.82995 * 11 10 9 13 13 C 1.53780 * 113.61333 * 300.02160 * 11 10 9 14 14 C 1.53785 * 87.07801 * 139.98081 * 13 11 10 15 15 H 1.09003 * 113.61437 * 89.20236 * 14 13 11 16 16 O 1.42899 * 113.61439 * 220.01613 * 14 13 11 17 17 C 1.53775 * 113.61365 * 37.52096 * 11 10 9 18 18 C 1.38326 * 120.24652 * 359.78786 * 10 9 8 19 19 C 1.38016 * 120.11818 * 359.95793 * 18 10 9 20 20 C 1.39321 * 119.75522 * 359.97438 * 6 5 4 21 21 C 1.38043 * 119.87797 * 0.28248 * 20 6 5 22 22 C 1.38301 * 120.11839 * 359.43864 * 21 20 6 23 23 H 0.96699 * 113.99985 * 60.00375 * 1 2 3 24 24 H 1.08994 * 109.46982 * 120.00212 * 2 1 3 25 25 H 1.48494 * 110.00296 * 298.67864 * 3 2 1 26 26 H 1.48495 * 110.00189 * 60.00341 * 3 2 1 27 27 H 1.08000 * 120.05730 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.06451 * 0.02562 * 8 7 6 29 29 H 1.08005 * 119.93734 * 180.25514 * 9 8 7 30 30 H 1.09002 * 113.61885 * 254.52852 * 13 11 10 31 31 H 1.09001 * 113.61534 * 25.43888 * 13 11 10 32 32 H 0.96709 * 113.99899 * 179.97438 * 16 14 13 33 33 H 1.09000 * 113.61729 * 334.56469 * 17 11 10 34 34 H 1.09007 * 113.61122 * 105.47066 * 17 11 10 35 35 H 1.07993 * 119.94233 * 179.97438 * 18 10 9 36 36 H 1.07995 * 120.06205 * 180.02562 * 19 18 10 37 37 H 1.08002 * 120.05673 * 179.97438 * 20 6 5 38 38 H 1.08004 * 119.93623 * 179.72472 * 21 20 6 39 39 H 1.08001 * 119.87433 * 180.26052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 1.5972 -2.0316 -1.4477 6 6 2.0628 -2.6874 -2.5857 7 6 1.7063 -4.1079 -2.8249 8 6 0.9100 -4.7926 -1.9092 9 6 0.5775 -6.1123 -2.1391 10 6 1.0416 -6.7580 -3.2708 11 6 0.6796 -8.2006 -3.5137 12 1 0.9364 -8.5381 -4.5178 13 6 1.1576 -9.1511 -2.4033 14 6 -0.1874 -9.8806 -2.5573 15 1 -0.1685 -10.6792 -3.2990 16 8 -0.7616 -10.2909 -1.3147 17 6 -0.7558 -8.5551 -3.0908 18 6 1.8373 -6.0848 -4.1802 19 6 2.1716 -4.7635 -3.9630 20 6 2.8634 -2.0043 -3.4986 21 6 3.1959 -0.6843 -3.2687 22 6 2.7263 -0.0368 -2.1405 23 1 -0.3933 0.4416 -0.7651 24 1 1.7924 -0.5138 0.8899 25 1 1.5879 2.4585 -1.2242 26 1 1.5615 2.4678 1.2085 27 1 0.9766 -2.5565 -0.7365 28 1 0.5502 -4.2904 -1.0233 29 1 -0.0431 -6.6428 -1.4321 30 1 2.0181 -9.7569 -2.6874 31 1 1.2821 -8.6646 -1.4358 32 1 -1.6079 -10.7501 -1.4051 33 1 -1.1543 -7.9058 -2.3113 34 1 -1.4400 -8.6798 -3.9302 35 1 2.1973 -6.5939 -5.0620 36 1 2.7925 -4.2386 -4.6738 37 1 3.2273 -2.5079 -4.3819 38 1 3.8202 -0.1551 -3.9735 39 1 2.9854 0.9972 -1.9666 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651798_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:13 Heat of formation + Delta-G solvation = -0.523510 kcal Electronic energy + Delta-G solvation = -20950.422222 eV Core-core repulsion = 17790.029818 eV Total energy + Delta-G solvation = -3160.392404 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35483 -40.56407 -39.12149 -37.70637 -36.09695 -33.67717 -32.69252 -31.72643 -30.21721 -26.89258 -26.70066 -26.04141 -24.21281 -23.43912 -22.25217 -21.52815 -20.19561 -18.98931 -18.53414 -17.70548 -17.11949 -16.71064 -16.53237 -16.28961 -15.98316 -15.62684 -15.22644 -15.13561 -14.89241 -14.52450 -14.32990 -14.17124 -14.02122 -13.57785 -13.45785 -13.37987 -13.09040 -12.59481 -12.49711 -12.32652 -12.05504 -12.00252 -11.76844 -11.47747 -11.34401 -10.74308 -10.66905 -10.49715 -9.93158 -9.85726 -8.93135 -4.94083 -0.35311 0.32038 0.43009 0.85662 1.28688 1.58452 1.93418 2.52700 2.99460 3.27077 3.35495 3.55319 3.58048 3.62156 3.67641 3.82753 3.92136 3.95574 3.98012 4.07867 4.11211 4.21286 4.30395 4.36607 4.43562 4.51117 4.58315 4.71025 4.77189 4.79379 4.84134 4.93795 4.96919 5.04192 5.07393 5.15398 5.26341 5.30799 5.37210 5.44461 5.52288 5.68721 5.73075 5.94082 6.01262 6.43592 6.87783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.087 4.087 3 Si 0.773 3.227 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.057 4.057 7 C -0.065 4.065 8 C -0.120 4.120 9 C -0.122 4.122 10 C -0.073 4.073 11 C -0.069 4.069 12 H 0.118 0.882 13 C -0.126 4.126 14 C 0.075 3.925 15 H 0.102 0.898 16 O -0.583 6.583 17 C -0.161 4.161 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.121 4.121 23 H 0.385 0.615 24 H 0.121 0.879 25 H -0.280 1.280 26 H -0.304 1.304 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.394 0.606 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -0.808 -4.223 4.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.196 4.196 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.057 4.057 7 C -0.065 4.065 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.073 4.073 11 C -0.087 4.087 12 H 0.136 0.864 13 C -0.163 4.163 14 C 0.016 3.984 15 H 0.120 0.880 16 O -0.392 6.392 17 C -0.199 4.199 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.138 4.138 23 H 0.235 0.765 24 H 0.139 0.861 25 H -0.207 1.207 26 H -0.232 1.232 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.892 -0.030 -3.442 4.496 hybrid contribution -1.828 -0.421 -0.409 1.919 sum 1.064 -0.451 -3.851 4.021 Atomic orbital electron populations 1.86566 1.18629 1.80449 1.50128 1.25319 0.83412 1.12266 0.98574 0.93986 0.90287 0.71512 0.76399 1.20275 0.99676 0.94665 0.97426 1.21138 0.99399 0.94335 0.97059 1.18969 0.98617 0.92582 0.95507 1.18934 0.98960 0.92644 0.95916 1.21360 0.98268 0.94859 0.99339 1.21072 1.00547 0.94499 0.97890 1.19911 0.97204 0.95656 0.94543 1.21356 0.96853 0.90304 1.00157 0.86356 1.23181 0.97015 0.97320 0.98791 1.23467 0.94128 0.94630 0.86136 0.88033 1.86495 1.41927 1.79543 1.31192 1.23788 0.96308 0.98193 1.01601 1.21278 0.98040 0.94402 0.99866 1.21468 0.99768 0.94994 0.96833 1.21561 0.97226 0.95067 0.99242 1.21403 0.99534 0.94410 0.97598 1.21329 0.97635 1.00430 0.94434 0.76540 0.86119 1.20662 1.23249 0.86065 0.85657 0.85676 0.89811 0.90703 0.75549 0.90013 0.89940 0.83702 0.83871 0.83870 0.82793 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.39 12.77 -148.98 -1.90 -4.29 16 2 C -0.09 -0.09 2.82 71.24 0.20 0.11 16 3 Si 0.77 -1.05 29.78 68.60 2.04 0.99 16 4 C -0.12 -0.23 5.39 -19.90 -0.11 -0.34 16 5 C -0.10 -0.45 8.99 22.48 0.20 -0.25 16 6 C -0.06 -0.23 5.88 -20.04 -0.12 -0.35 16 7 C -0.06 -0.31 5.88 -20.04 -0.12 -0.43 16 8 C -0.12 -0.64 9.43 22.48 0.21 -0.43 16 9 C -0.12 -0.53 8.59 22.24 0.19 -0.34 16 10 C -0.07 -0.17 5.29 -19.82 -0.10 -0.27 16 11 C -0.07 0.08 3.98 -11.01 -0.04 0.03 16 12 H 0.12 -0.54 8.09 -2.39 -0.02 -0.56 16 13 C -0.13 -0.07 7.38 31.12 0.23 0.16 16 14 C 0.08 -0.07 5.21 31.12 0.16 0.09 16 15 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 16 O -0.58 -1.23 13.67 -148.98 -2.04 -3.26 16 17 C -0.16 0.18 7.28 31.12 0.23 0.41 16 18 C -0.12 -0.12 9.69 22.24 0.22 0.09 16 19 C -0.11 -0.22 9.43 22.48 0.21 -0.01 16 20 C -0.11 -0.07 9.43 22.48 0.21 0.15 16 21 C -0.11 0.17 10.03 22.24 0.22 0.40 16 22 C -0.12 0.10 8.67 22.31 0.19 0.29 16 23 H 0.39 -0.45 8.70 -74.06 -0.64 -1.10 16 24 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 25 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 26 H -0.30 -1.98 7.11 99.48 0.71 -1.27 16 27 H 0.12 0.59 6.21 -2.91 -0.02 0.57 16 28 H 0.13 0.50 6.21 -2.91 -0.02 0.48 16 29 H 0.13 0.43 6.65 -2.91 -0.02 0.41 16 30 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.07 0.32 7.72 -2.39 -0.02 0.30 16 32 H 0.39 -2.45 9.12 -74.05 -0.68 -3.12 16 33 H 0.08 0.12 6.30 -2.39 -0.02 0.10 16 34 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 35 H 0.15 -0.54 8.05 -2.91 -0.02 -0.56 16 36 H 0.14 -0.36 6.21 -2.91 -0.02 -0.38 16 37 H 0.14 -0.50 6.21 -2.91 -0.02 -0.52 16 38 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 39 H 0.15 -0.74 4.87 -2.91 -0.01 -0.76 16 Total: 0.00 -15.39 318.54 -0.10 -15.49 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: -0.19 Total: -8.25 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 1.99 Total: -0.68 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -3.94 Total: -7.55 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.04 Total: 0.99 kcal Total: -15.39 -0.10 -15.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -15.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds