Wall clock time and date at job start Mon Mar 8 2021 07:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47042 * 2 1 4 4 C 1.53001 * 109.46795 * 239.99831 * 2 1 3 5 5 O 1.45199 * 109.47181 * 119.99981 * 2 1 3 6 6 C 1.34642 * 116.99903 * 59.99664 * 5 2 1 7 7 O 1.21509 * 119.99972 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99721 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99526 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.85294 * 23.80734 * 9 8 6 11 11 C 1.53789 * 113.61091 * 155.00033 * 9 8 6 12 12 C 1.53778 * 87.07886 * 89.11502 * 11 9 8 13 13 H 1.08998 * 113.61807 * 270.79632 * 12 11 9 14 14 C 1.50708 * 113.61349 * 139.98193 * 12 11 9 15 15 C 1.37992 * 119.93851 * 119.99667 * 14 12 11 16 16 C 1.39355 * 119.87558 * 179.97438 * 15 14 12 17 17 C 1.48394 * 120.12283 * 179.72597 * 16 15 14 18 18 C 1.39315 * 120.12303 * 180.02562 * 17 16 15 19 19 C 1.38045 * 119.87622 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.93911 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47073 * 300.00153 * 20 19 18 22 22 Si 1.86297 * 109.47390 * 179.97438 * 20 19 18 23 23 C 1.38299 * 120.12364 * 359.97438 * 19 18 17 24 24 C 1.38348 * 120.23905 * 0.02562 * 23 19 18 25 25 C 1.37999 * 120.12563 * 359.74681 * 24 23 19 26 26 C 1.39318 * 119.75903 * 0.02562 * 16 15 14 27 27 C 1.38031 * 119.87916 * 359.97438 * 26 16 15 28 28 C 1.38308 * 120.11907 * 0.02562 * 27 26 16 29 29 C 1.53781 * 87.08477 * 25.43218 * 12 11 9 30 30 H 1.09003 * 109.46884 * 300.00113 * 1 2 3 31 31 H 1.09001 * 109.47291 * 59.99620 * 1 2 3 32 32 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47390 * 299.99784 * 3 2 1 35 35 H 1.09003 * 109.47373 * 60.00187 * 3 2 1 36 36 H 1.09000 * 109.47335 * 299.99588 * 4 2 1 37 37 H 1.08999 * 109.47191 * 60.00490 * 4 2 1 38 38 H 1.09004 * 109.46611 * 179.97438 * 4 2 1 39 39 H 0.96998 * 119.99801 * 0.02562 * 8 6 5 40 40 H 1.08996 * 113.61678 * 334.56536 * 11 9 8 41 41 H 1.09004 * 113.61075 * 203.66500 * 11 9 8 42 42 H 1.08000 * 120.06703 * 359.95531 * 15 14 12 43 43 H 1.07998 * 120.05900 * 359.97438 * 18 17 16 44 44 H 1.09007 * 109.47066 * 59.99626 * 20 19 18 45 45 H 0.96703 * 113.99873 * 299.99214 * 21 20 19 46 46 H 1.48494 * 110.00350 * 180.02562 * 22 20 19 47 47 H 1.48505 * 109.99868 * 301.31893 * 22 20 19 48 48 H 1.07997 * 119.87929 * 180.02562 * 23 19 18 49 49 H 1.07998 * 119.93410 * 180.02562 * 24 23 19 50 50 H 1.07999 * 120.06124 * 180.28062 * 25 24 23 51 51 H 1.08005 * 120.05885 * 179.97438 * 26 16 15 52 52 H 1.08000 * 119.94493 * 180.02562 * 27 26 16 53 53 H 1.08002 * 119.87802 * 179.97438 * 28 27 26 54 54 H 1.08994 * 113.61487 * 89.11662 * 29 12 11 55 55 H 1.08998 * 113.61563 * 220.02059 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0671 2.5826 10 1 1.4224 -4.5505 1.6389 11 6 2.6485 -4.8815 3.4508 12 6 1.8079 -4.4465 4.6628 13 1 2.1377 -3.5083 5.1089 14 6 1.6058 -5.5393 5.6808 15 6 2.0537 -5.3668 6.9745 16 6 1.8657 -6.3779 7.9149 17 6 2.3506 -6.2006 9.3061 18 6 2.1631 -7.2116 10.2461 19 6 2.6167 -7.0415 11.5387 20 6 2.4152 -8.1344 12.5565 21 8 1.0177 -8.3897 12.7109 22 14 3.1341 -7.6017 14.1905 23 6 3.2567 -5.8703 11.9012 24 6 3.4455 -4.8630 10.9718 25 6 3.0003 -5.0243 9.6756 26 6 1.2265 -7.5584 7.5425 27 6 0.7825 -7.7204 6.2456 28 6 0.9717 -6.7136 5.3164 29 6 0.6289 -4.2866 3.6885 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 2.6276 -2.2368 3.0828 40 1 3.6635 -4.4844 3.4583 41 1 2.6138 -5.9537 3.2574 42 1 2.5493 -4.4499 7.2578 43 1 1.6639 -8.1268 9.9639 44 1 2.9152 -9.0422 12.2186 45 1 0.5087 -7.6239 13.0101 46 1 2.9423 -8.6712 15.2027 47 1 4.5805 -7.3030 14.0358 48 1 3.6103 -5.7415 12.9135 49 1 3.9462 -3.9506 11.2601 50 1 3.1522 -4.2392 8.9497 51 1 1.0786 -8.3454 8.2673 52 1 0.2864 -8.6349 5.9559 53 1 0.6231 -6.8446 4.3026 54 1 0.0421 -5.1961 3.5601 55 1 0.0136 -3.4093 3.8878 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651798_14315990.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:31:55 Heat of formation + Delta-G solvation = -30.652739 kcal Electronic energy + Delta-G solvation = -33911.387021 eV Core-core repulsion = 29459.665777 eV Total energy + Delta-G solvation = -4451.721244 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.01628 -41.27625 -40.54470 -39.21419 -37.88350 -37.48737 -35.40029 -34.39777 -33.58864 -32.53344 -31.73797 -29.95105 -28.38112 -28.31353 -26.99853 -26.71412 -26.22420 -24.71138 -23.76929 -23.49566 -21.92061 -21.55071 -21.15599 -19.88683 -19.35568 -18.69228 -17.89238 -17.61859 -17.24027 -17.06184 -16.82004 -16.57424 -16.33449 -16.10220 -15.76037 -15.67499 -15.45250 -15.24959 -14.93717 -14.83260 -14.63837 -14.48328 -14.44353 -14.25672 -14.03149 -13.80670 -13.50329 -13.37679 -13.23699 -13.14737 -12.98396 -12.93248 -12.87927 -12.69796 -12.61399 -12.49105 -12.34330 -12.15953 -12.02099 -11.84615 -11.74883 -11.50746 -11.41206 -11.24350 -11.12080 -10.64336 -10.45520 -10.20123 -9.84113 -9.67160 -8.98172 -5.01814 -0.30873 0.33379 0.42816 0.91506 1.11576 1.29693 1.61523 1.71257 1.94192 2.56592 3.02655 3.09636 3.42236 3.43926 3.59187 3.64465 3.67274 3.72966 3.75304 3.78657 3.91550 3.93155 3.95999 3.98383 4.08747 4.23551 4.27178 4.33350 4.38505 4.43680 4.45279 4.47013 4.58972 4.60035 4.67504 4.74328 4.75265 4.77103 4.80789 4.82153 4.86501 4.88779 4.92352 4.97957 5.01260 5.06717 5.10107 5.14421 5.16086 5.25848 5.29612 5.30384 5.39998 5.45233 5.46367 5.56805 5.58512 5.71241 5.75066 5.95652 6.05389 6.37011 6.73161 7.31916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.133 3.867 10 H 0.094 0.906 11 C -0.124 4.124 12 C -0.065 4.065 13 H 0.110 0.890 14 C -0.070 4.070 15 C -0.112 4.112 16 C -0.058 4.058 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.077 4.077 21 O -0.556 6.556 22 Si 0.781 3.219 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.142 4.142 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.395 0.605 46 H -0.300 1.300 47 H -0.284 1.284 48 H 0.144 0.856 49 H 0.153 0.847 50 H 0.143 0.857 51 H 0.125 0.875 52 H 0.137 0.863 53 H 0.138 0.862 54 H 0.102 0.898 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 5.000 1.634 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.028 3.972 10 H 0.112 0.888 11 C -0.161 4.161 12 C -0.084 4.084 13 H 0.128 0.872 14 C -0.070 4.070 15 C -0.130 4.130 16 C -0.058 4.058 17 C -0.057 4.057 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.187 4.187 21 O -0.364 6.364 22 Si 0.687 3.313 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.180 4.180 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.140 0.860 44 H 0.121 0.879 45 H 0.245 0.755 46 H -0.229 1.229 47 H -0.211 1.211 48 H 0.162 0.838 49 H 0.171 0.829 50 H 0.161 0.839 51 H 0.143 0.857 52 H 0.155 0.845 53 H 0.156 0.844 54 H 0.120 0.880 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.878 4.069 1.583 4.752 hybrid contribution 0.111 -0.599 -0.316 0.686 sum 1.989 3.470 1.267 4.195 Atomic orbital electron populations 1.22474 0.94062 1.03682 1.03516 1.22351 0.94442 0.92584 0.81485 1.21893 1.02480 0.90845 1.04262 1.22479 1.01659 1.02253 0.97371 1.86311 1.71535 1.23210 1.47287 1.18319 0.78587 0.80797 0.82352 1.90907 1.42181 1.70904 1.44381 1.44359 1.54849 1.11909 1.23079 1.21854 0.96937 0.79151 0.99239 0.88821 1.23409 0.98659 1.01120 0.92952 1.21597 0.97245 0.97033 0.92489 0.87199 1.19739 0.97828 0.95420 0.94031 1.21302 1.00222 0.99016 0.92452 1.18901 0.99378 0.95077 0.92491 1.18981 0.99153 0.95111 0.92438 1.21138 0.99331 0.98844 0.92505 1.20342 1.00319 0.96370 0.95295 1.25234 0.87562 0.99207 1.06676 1.86461 1.17864 1.41541 1.90577 0.93640 0.79066 0.84633 0.73945 1.21325 0.99078 0.93131 1.00418 1.21396 0.99142 0.99785 0.92647 1.21546 0.97382 0.96879 0.97288 1.21409 0.98854 0.97246 0.97109 1.21320 0.99753 0.99898 0.93051 1.21315 0.98901 0.93127 1.00372 1.23592 0.96548 1.03143 0.94757 0.91939 0.89474 0.91810 0.91143 0.88327 0.91150 0.91789 0.89478 0.91908 0.74585 0.89390 0.87572 0.84335 0.85963 0.87943 0.75532 1.22853 1.21106 0.83850 0.82888 0.83937 0.85733 0.84528 0.84383 0.87951 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 2 C 0.13 0.34 1.13 -10.80 -0.01 0.33 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 5 O -0.37 -1.87 9.94 -55.52 -0.55 -2.42 16 6 C 0.65 4.06 8.06 129.79 1.05 5.11 16 7 O -0.59 -7.01 11.48 19.81 0.23 -6.78 16 8 N -0.68 0.16 5.27 -567.59 -2.99 -2.83 16 9 C 0.13 -0.22 4.32 45.52 0.20 -0.02 16 10 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 11 C -0.12 0.66 7.29 31.12 0.23 0.88 16 12 C -0.07 0.31 3.85 -11.01 -0.04 0.26 16 13 H 0.11 -0.75 8.09 -2.39 -0.02 -0.77 16 14 C -0.07 0.08 5.28 -19.90 -0.11 -0.02 16 15 C -0.11 -0.03 9.09 22.48 0.20 0.18 16 16 C -0.06 -0.18 5.88 -20.04 -0.12 -0.29 16 17 C -0.06 -0.16 5.88 -20.04 -0.12 -0.28 16 18 C -0.10 -0.34 8.99 22.48 0.20 -0.14 16 19 C -0.12 -0.14 5.39 -19.90 -0.11 -0.25 16 20 C -0.08 -0.04 2.82 71.24 0.20 0.16 16 21 O -0.56 -0.73 12.77 -148.98 -1.90 -2.64 16 22 Si 0.78 -1.51 29.78 68.60 2.04 0.53 16 23 C -0.12 0.18 8.67 22.31 0.19 0.37 16 24 C -0.11 0.26 10.03 22.24 0.22 0.48 16 25 C -0.11 0.05 9.43 22.48 0.21 0.26 16 26 C -0.13 -0.38 9.43 22.48 0.21 -0.17 16 27 C -0.12 -0.11 10.03 22.24 0.22 0.11 16 28 C -0.12 0.08 8.60 22.31 0.19 0.27 16 29 C -0.14 0.39 7.25 31.12 0.23 0.61 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 33 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 37 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.42 -2.02 8.81 -92.71 -0.82 -2.84 16 40 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.11 -0.60 7.72 -2.38 -0.02 -0.62 16 42 H 0.14 -0.50 6.20 -2.91 -0.02 -0.52 16 43 H 0.12 0.44 6.21 -2.91 -0.02 0.43 16 44 H 0.10 0.22 7.96 -2.38 -0.02 0.20 16 45 H 0.39 -2.62 8.70 -74.06 -0.64 -3.27 16 46 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 47 H -0.28 -0.67 7.11 99.48 0.71 0.04 16 48 H 0.14 -0.81 4.86 -2.91 -0.01 -0.82 16 49 H 0.15 -1.14 8.06 -2.91 -0.02 -1.17 16 50 H 0.14 -0.63 6.21 -2.91 -0.02 -0.65 16 51 H 0.12 0.22 6.21 -2.91 -0.02 0.21 16 52 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 53 H 0.14 -0.56 6.65 -2.91 -0.02 -0.58 16 54 H 0.10 -0.35 6.30 -2.39 -0.02 -0.37 16 55 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -18.78 433.00 1.23 -17.55 By element: Atomic # 1 Polarization: -11.82 SS G_CDS: -0.49 Total: -12.32 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.90 Total: 8.91 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -2.99 Total: -2.83 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -2.23 Total: -11.84 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.04 Total: 0.53 kcal Total: -18.78 1.23 -17.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_14315990.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.107 kcal (2) G-P(sol) polarization free energy of solvation -18.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds