Wall clock time and date at job start Mon Mar 8 2021 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40074 * 126.13823 * 2 1 4 4 C 1.30891 * 108.50827 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.70451 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47438 * 179.97438 * 5 4 3 7 7 Si 1.63098 * 114.00279 * 179.97438 * 6 5 4 8 8 C 1.86300 * 109.47454 * 300.00210 * 7 6 5 9 9 C 1.86305 * 109.46711 * 60.00204 * 7 6 5 10 10 C 1.86298 * 109.47327 * 180.02562 * 7 6 5 11 11 C 1.53000 * 109.47019 * 60.00140 * 10 7 6 12 12 C 1.52997 * 109.47306 * 180.02562 * 10 7 6 13 13 C 1.53001 * 109.47360 * 300.00371 * 10 7 6 14 14 C 1.39497 * 108.59550 * 359.74478 * 4 3 2 15 15 C 1.36293 * 126.14218 * 179.97438 * 2 1 3 16 16 C 1.47979 * 126.33320 * 0.02599 * 15 2 1 17 17 C 1.39478 * 120.13909 * 339.13245 * 16 15 2 18 18 C 1.38000 * 119.85822 * 179.74413 * 17 16 15 19 19 C 1.38319 * 120.13928 * 0.53722 * 18 17 16 20 20 C 1.38368 * 120.27944 * 359.72023 * 19 18 17 21 21 C 1.50694 * 119.93407 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47160 * 245.02155 * 21 20 19 23 23 Si 1.86297 * 109.47151 * 5.02125 * 21 20 19 24 24 H 1.48497 * 109.47206 * 59.99840 * 23 21 20 25 25 H 1.48500 * 109.47166 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47157 * 300.00117 * 23 21 20 27 27 C 1.37960 * 120.13570 * 0.02562 * 20 19 18 28 28 H 1.09000 * 109.47432 * 264.08017 * 1 2 3 29 29 H 1.09009 * 109.47153 * 24.08024 * 1 2 3 30 30 H 1.08996 * 109.46885 * 144.07825 * 1 2 3 31 31 H 1.09003 * 109.46903 * 299.97929 * 5 4 3 32 32 H 1.09001 * 109.46779 * 59.97630 * 5 4 3 33 33 H 1.09006 * 109.46597 * 59.99680 * 8 7 6 34 34 H 1.08992 * 109.47180 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.46938 * 300.00062 * 8 7 6 36 36 H 1.09002 * 109.47312 * 60.00338 * 9 7 6 37 37 H 1.09007 * 109.46724 * 180.02562 * 9 7 6 38 38 H 1.08998 * 109.46992 * 299.99776 * 9 7 6 39 39 H 1.09001 * 109.47256 * 60.00334 * 11 10 7 40 40 H 1.09007 * 109.46851 * 180.02562 * 11 10 7 41 41 H 1.09000 * 109.47196 * 299.99566 * 11 10 7 42 42 H 1.08998 * 109.47104 * 60.00231 * 12 10 7 43 43 H 1.08998 * 109.47189 * 179.97438 * 12 10 7 44 44 H 1.09001 * 109.47070 * 299.99727 * 12 10 7 45 45 H 1.09000 * 109.47252 * 59.99295 * 13 10 7 46 46 H 1.08998 * 109.47576 * 179.97438 * 13 10 7 47 47 H 1.09007 * 109.46743 * 300.00258 * 13 10 7 48 48 H 1.08000 * 126.07465 * 180.29002 * 14 4 3 49 49 H 1.08004 * 120.07132 * 359.97438 * 17 16 15 50 50 H 1.08004 * 119.93170 * 180.23320 * 18 17 16 51 51 H 1.08002 * 119.86423 * 179.69579 * 19 18 17 52 52 H 1.09005 * 109.47311 * 125.02267 * 21 20 19 53 53 H 0.96701 * 114.00250 * 59.99919 * 22 21 20 54 54 H 1.08001 * 120.07072 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1312 0.0000 4 6 3.5385 0.7348 0.0006 5 6 4.7473 1.6347 0.0013 6 8 5.9339 0.8386 0.0024 7 14 7.3150 1.7061 0.0026 8 6 7.3745 2.7794 -1.5191 9 6 7.3728 2.7809 1.5232 10 6 8.7752 0.5492 0.0032 11 6 8.7274 -0.3330 -1.2459 12 6 10.0708 1.3631 0.0041 13 6 8.7267 -0.3327 1.2525 14 6 3.5620 -0.6599 0.0068 15 6 2.2688 -1.1006 0.0005 16 6 1.8232 -2.5118 0.0006 17 6 0.5374 -2.8401 0.4298 18 6 0.1261 -4.1574 0.4225 19 6 0.9897 -5.1523 0.0012 20 6 2.2684 -4.8336 -0.4208 21 6 3.2026 -5.9237 -0.8787 22 8 4.3110 -6.0094 0.0191 23 14 2.2949 -7.5504 -0.9018 24 1 1.1431 -7.4614 -1.8348 25 1 3.2158 -8.6248 -1.3525 26 1 1.8025 -7.8620 0.4641 27 6 2.6897 -3.5199 -0.4231 28 1 -0.3634 -0.1060 1.0222 29 1 -0.3634 0.9383 -0.4193 30 1 -0.3633 -0.8322 -0.6029 31 1 4.7325 2.2637 -0.8888 32 1 4.7312 2.2640 0.8912 33 1 6.5201 3.4563 -1.5198 34 1 8.2973 3.3595 -1.5186 35 1 7.3407 2.1505 -2.4088 36 1 7.3381 2.1530 2.4136 37 1 8.2957 3.3611 1.5232 38 1 6.5185 3.4578 1.5224 39 1 8.7620 0.2952 -2.1360 40 1 9.5816 -1.0102 -1.2453 41 1 7.8045 -0.9129 -1.2460 42 1 10.1046 1.9913 0.8942 43 1 10.9251 0.6862 0.0049 44 1 10.1056 1.9916 -0.8858 45 1 7.8037 -0.9125 1.2524 46 1 9.5808 -1.0099 1.2527 47 1 8.7607 0.2959 2.1425 48 1 4.4455 -1.2811 0.0132 49 1 -0.1362 -2.0647 0.7637 50 1 -0.8706 -4.4125 0.7511 51 1 0.6648 -6.1823 0.0020 52 1 3.5641 -5.6951 -1.8813 53 1 4.0632 -6.2109 0.9319 54 1 3.6881 -3.2724 -0.7523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651798_15493832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:57 Heat of formation + Delta-G solvation = -20.138261 kcal Electronic energy + Delta-G solvation = -30750.007333 eV Core-core repulsion = 26812.007630 eV Total energy + Delta-G solvation = -3937.999702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33804 -40.38931 -38.07442 -37.55931 -36.78892 -34.62343 -33.38817 -32.39930 -30.06999 -29.42464 -29.02346 -28.93482 -27.79163 -27.33564 -26.75686 -26.13262 -24.32398 -22.76854 -21.26242 -20.59816 -20.29333 -18.61131 -17.71961 -17.58962 -17.40872 -16.82059 -16.42230 -16.20402 -16.04654 -15.92358 -15.63651 -15.43214 -15.12354 -14.82429 -14.81063 -14.67100 -14.49512 -14.22741 -13.94194 -13.80019 -13.64408 -13.58840 -13.39486 -13.34789 -13.17502 -13.14366 -12.90803 -12.87487 -12.71217 -12.48291 -12.35944 -12.15659 -12.00161 -11.96346 -11.77095 -11.64004 -11.58457 -11.55453 -11.38150 -10.82880 -10.42469 -10.33997 -10.02469 -9.90618 -9.74560 -9.18518 -0.24888 0.27770 1.00913 1.18109 1.25715 1.47454 1.54048 1.66022 1.74711 1.82086 1.93681 2.15338 2.48390 2.71766 3.30223 3.49467 3.54360 3.70456 3.86370 3.99547 4.04150 4.16453 4.17039 4.19457 4.26279 4.29444 4.40600 4.42547 4.47565 4.52161 4.53463 4.61305 4.70643 4.77665 4.78259 4.81754 4.82464 4.87084 4.87963 4.88120 4.95740 5.01351 5.05038 5.14126 5.14257 5.22301 5.31299 5.32947 5.38497 5.40579 5.45775 5.47186 5.51938 5.59631 5.65405 5.68051 5.84181 5.99251 6.63013 6.71609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.372 5.372 3 N -0.313 5.313 4 C 0.059 3.941 5 C 0.165 3.835 6 O -0.632 6.632 7 Si 1.321 2.679 8 C -0.519 4.519 9 C -0.519 4.519 10 C -0.378 4.378 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.238 4.238 15 C 0.111 3.889 16 C -0.043 4.043 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.083 4.083 22 O -0.552 6.552 23 Si 0.986 3.014 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.247 1.247 27 C -0.072 4.072 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.157 0.843 49 H 0.146 0.854 50 H 0.157 0.843 51 H 0.137 0.863 52 H 0.122 0.878 53 H 0.389 0.611 54 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 -1.228 0.694 3.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.156 5.156 3 N -0.139 5.139 4 C -0.105 4.105 5 C 0.088 3.912 6 O -0.590 6.590 7 Si 1.452 2.548 8 C -0.621 4.621 9 C -0.621 4.621 10 C -0.421 4.421 11 C -0.194 4.194 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.267 4.267 15 C -0.015 4.015 16 C -0.045 4.045 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.141 4.141 20 C -0.119 4.119 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.810 3.190 24 H -0.179 1.179 25 H -0.204 1.204 26 H -0.171 1.171 27 C -0.091 4.091 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.174 0.826 49 H 0.164 0.836 50 H 0.175 0.825 51 H 0.155 0.845 52 H 0.140 0.860 53 H 0.238 0.762 54 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.588 -1.104 0.147 4.721 hybrid contribution 0.908 0.044 0.431 1.006 sum -3.679 -1.060 0.578 3.873 Atomic orbital electron populations 1.22407 0.72408 1.06026 1.04699 1.48931 1.07349 1.02255 1.57018 1.77166 1.01393 1.08515 1.26780 1.22325 0.93062 0.95009 1.00093 1.20106 0.79451 0.88663 1.02980 1.85240 1.27806 1.54205 1.91747 0.76139 0.55217 0.58773 0.64674 1.27104 1.05105 1.11577 1.18281 1.27104 1.05107 1.11596 1.18259 1.25864 1.11792 1.06650 0.97789 1.21543 1.01701 0.99452 0.96721 1.21604 0.96141 0.99717 1.02338 1.21543 1.01694 0.99457 0.96723 1.21357 0.96166 0.94463 1.14711 1.19839 0.90888 0.88003 1.02790 1.18125 0.95436 0.88457 1.02439 1.21754 0.94747 0.98141 0.98818 1.21344 1.00943 0.91692 0.98551 1.21442 0.93449 1.00560 0.98614 1.20341 0.95521 0.95030 1.00997 1.25105 0.92153 1.05118 0.96959 1.86506 1.31941 1.94133 1.23356 0.85173 0.77778 0.74719 0.81363 1.17850 1.20397 1.17050 1.21061 0.99306 0.91307 0.97428 0.88747 0.88303 0.87631 0.89343 0.89358 0.91036 0.90134 0.91157 0.91163 0.90131 0.91032 0.92110 0.93332 0.92548 0.91754 0.93101 0.91751 0.92568 0.93321 0.92116 0.82552 0.83622 0.82547 0.84547 0.86050 0.76219 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.23 9.64 127.77 1.23 1.00 16 2 N -0.37 -2.27 4.05 -356.90 -1.45 -3.72 16 3 N -0.31 -3.10 12.56 -47.59 -0.60 -3.70 16 4 C 0.06 0.50 7.16 43.00 0.31 0.80 16 5 C 0.17 0.48 5.74 71.24 0.41 0.89 16 6 O -0.63 -1.58 7.87 -148.98 -1.17 -2.75 16 7 Si 1.32 -1.95 8.45 68.60 0.58 -1.37 16 8 C -0.52 0.59 8.50 113.37 0.96 1.55 16 9 C -0.52 0.59 8.50 113.37 0.96 1.55 16 10 C -0.38 -0.06 0.53 -10.79 -0.01 -0.07 16 11 C -0.14 -0.19 7.85 71.98 0.56 0.38 16 12 C -0.14 0.13 7.85 71.98 0.56 0.69 16 13 C -0.14 -0.19 7.85 71.98 0.56 0.38 16 14 C -0.24 -1.98 9.51 22.20 0.21 -1.77 16 15 C 0.11 0.74 6.74 40.66 0.27 1.01 16 16 C -0.04 -0.13 5.84 -20.09 -0.12 -0.25 16 17 C -0.12 0.16 8.60 22.51 0.19 0.35 16 18 C -0.11 0.37 10.03 22.23 0.22 0.59 16 19 C -0.12 0.26 8.67 22.32 0.19 0.46 16 20 C -0.12 0.01 5.35 -19.90 -0.11 -0.10 16 21 C -0.08 0.12 2.80 71.23 0.20 0.32 16 22 O -0.55 -0.24 12.83 -148.98 -1.91 -2.15 16 23 Si 0.99 -2.50 25.13 68.60 1.72 -0.77 16 24 H -0.25 0.47 7.11 99.48 0.71 1.18 16 25 H -0.28 -0.46 7.11 99.48 0.71 0.25 16 26 H -0.25 0.83 7.04 99.48 0.70 1.53 16 27 C -0.07 -0.19 9.20 22.51 0.21 0.02 16 28 H 0.09 -0.58 7.64 -2.39 -0.02 -0.60 16 29 H 0.10 -0.36 8.14 -2.38 -0.02 -0.38 16 30 H 0.11 -0.65 6.56 -2.39 -0.02 -0.66 16 31 H 0.09 -0.02 7.21 -2.39 -0.02 -0.04 16 32 H 0.09 -0.02 7.21 -2.39 -0.02 -0.03 16 33 H 0.07 -0.12 7.48 -2.38 -0.02 -0.14 16 34 H 0.08 -0.18 7.79 -2.39 -0.02 -0.19 16 35 H 0.07 -0.01 7.79 -2.38 -0.02 -0.03 16 36 H 0.07 -0.01 7.79 -2.39 -0.02 -0.03 16 37 H 0.08 -0.18 7.79 -2.38 -0.02 -0.20 16 38 H 0.07 -0.13 7.48 -2.39 -0.02 -0.14 16 39 H 0.06 -0.01 7.79 -2.39 -0.02 -0.02 16 40 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.06 0.13 7.97 -2.39 -0.02 0.11 16 42 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 43 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 45 H 0.06 0.13 7.97 -2.39 -0.02 0.11 16 46 H 0.05 0.10 8.14 -2.39 -0.02 0.09 16 47 H 0.06 0.00 7.80 -2.38 -0.02 -0.02 16 48 H 0.16 1.12 7.52 -2.91 -0.02 1.10 16 49 H 0.15 -0.78 5.01 -2.91 -0.01 -0.80 16 50 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 51 H 0.14 -0.72 4.84 -2.91 -0.01 -0.73 16 52 H 0.12 -0.29 7.96 -2.38 -0.02 -0.31 16 53 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 54 H 0.13 0.41 7.41 -2.91 -0.02 0.39 16 Total: 0.00 -15.90 426.43 5.00 -10.90 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 0.99 Total: -4.24 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.84 Total: 7.80 kcal Atomic # 7 Polarization: -5.37 SS G_CDS: -2.04 Total: -7.42 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: -3.08 Total: -4.90 kcal Atomic # 14 Polarization: -4.45 SS G_CDS: 2.30 Total: -2.15 kcal Total: -15.90 5.00 -10.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_15493832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.243 kcal (2) G-P(sol) polarization free energy of solvation -15.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds