Wall clock time and date at job start Mon Mar 8 2021 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33054 * 122.54424 * 359.70898 * 10 9 8 12 12 S 1.75812 * 109.93016 * 179.90583 * 11 10 9 13 13 C 1.75851 * 91.15248 * 0.30129 * 12 11 10 14 14 C 1.34571 * 109.54203 * 359.83111 * 13 12 11 15 15 C 1.48364 * 122.77108 * 180.02562 * 14 13 12 16 16 C 1.39336 * 120.11989 * 129.70104 * 15 14 13 17 17 C 1.38043 * 119.87668 * 179.79420 * 16 15 14 18 18 C 1.38305 * 120.11937 * 0.46180 * 17 16 15 19 19 C 1.38350 * 120.24601 * 359.79056 * 18 17 16 20 20 C 1.50704 * 119.93730 * 179.97438 * 19 18 17 21 21 O 1.42892 * 109.47043 * 120.02498 * 20 19 18 22 22 Si 1.86303 * 109.46934 * 0.02562 * 20 19 18 23 23 H 1.48498 * 109.47050 * 60.00075 * 22 20 19 24 24 H 1.48500 * 109.46806 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47182 * 299.99698 * 22 20 19 26 26 C 1.37989 * 120.12775 * 359.97438 * 19 18 17 27 27 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 32 32 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 33 33 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 34 34 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 35 35 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 38 38 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 39 39 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 40 40 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 41 41 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 43 43 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 44 44 H 1.08002 * 125.03687 * 0.02562 * 11 10 9 45 45 H 1.07999 * 125.23376 * 179.86675 * 13 12 11 46 46 H 1.08005 * 120.06471 * 0.02562 * 16 15 14 47 47 H 1.07999 * 119.93829 * 180.21222 * 17 16 15 48 48 H 1.07995 * 119.87451 * 179.76852 * 18 17 16 49 49 H 1.09004 * 109.47230 * 240.02334 * 20 19 18 50 50 H 0.96702 * 114.00237 * 180.02562 * 21 20 19 51 51 H 1.07992 * 120.06743 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7047 -4.9696 1.5345 12 16 0.2442 -6.6530 1.7466 13 6 1.1381 -6.7440 3.2583 14 6 1.7151 -5.5551 3.5123 15 6 2.5428 -5.3055 4.7180 16 6 3.8058 -4.7305 4.5922 17 6 4.5700 -4.4965 5.7178 18 6 4.0881 -4.8406 6.9677 19 6 2.8369 -5.4166 7.0979 20 6 2.3189 -5.7893 8.4631 21 8 1.1088 -5.0758 8.7245 22 14 3.5904 -5.3483 9.7514 23 1 3.8567 -3.8881 9.7046 24 1 3.0802 -5.7161 11.0966 25 1 4.8481 -6.0899 9.4798 26 6 2.0625 -5.6506 5.9800 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.8931 -0.5142 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3931 2.4104 42 1 3.1176 -3.2253 2.6757 43 1 1.6639 -2.7113 3.5651 44 1 0.4105 -4.3464 0.7029 45 1 1.2130 -7.6196 3.8861 46 1 4.1846 -4.4648 3.6163 47 1 5.5476 -4.0477 5.6218 48 1 4.6908 -4.6592 7.8452 49 1 2.1234 -6.8611 8.4975 50 1 0.7183 -5.2667 9.5883 51 1 1.0862 -6.1006 6.0827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651798_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:34:11 Heat of formation + Delta-G solvation = -76.514009 kcal Electronic energy + Delta-G solvation = -28688.010085 eV Core-core repulsion = 24994.881294 eV Total energy + Delta-G solvation = -3693.128791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95605 -39.33397 -37.66090 -37.06999 -36.84326 -32.87069 -32.39408 -30.27647 -29.43679 -29.09260 -27.86943 -27.66841 -27.38900 -26.62111 -24.68109 -22.69569 -22.11316 -20.43477 -19.35796 -18.72900 -18.49903 -17.84954 -17.21729 -16.82274 -16.58238 -16.17665 -15.89053 -15.79082 -15.43711 -14.96085 -14.88116 -14.75378 -14.53540 -14.39960 -14.12367 -14.00207 -13.68112 -13.62236 -13.59137 -13.37841 -13.33082 -13.28161 -13.21721 -12.94646 -12.93992 -12.84933 -12.42405 -12.36742 -12.22822 -11.99238 -11.89467 -11.75504 -11.73877 -11.64398 -11.58777 -11.31540 -10.45667 -10.40102 -10.13746 -10.08365 -9.77160 -9.44921 -8.99722 -0.08723 0.33590 0.44189 0.78087 1.10568 1.11871 1.39826 1.41775 1.46607 1.71829 1.73709 1.86945 2.05150 2.42803 2.70944 3.36885 3.69491 3.81893 3.98093 4.02892 4.05505 4.10843 4.10931 4.16352 4.31098 4.36428 4.40724 4.45839 4.47703 4.57255 4.66146 4.67844 4.73276 4.74475 4.76243 4.80364 4.82523 4.84476 4.98766 4.99383 5.02366 5.09194 5.09602 5.16596 5.23541 5.32685 5.33626 5.41138 5.45211 5.47154 5.52199 5.56527 5.57072 5.60457 5.73558 5.95431 6.54040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.624 6.624 9 C 0.147 3.853 10 C -0.104 4.104 11 C -0.178 4.178 12 S 0.106 5.894 13 C -0.202 4.202 14 C -0.060 4.060 15 C -0.027 4.027 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.082 4.082 21 O -0.544 6.544 22 Si 0.946 3.054 23 H -0.247 1.247 24 H -0.257 1.257 25 H -0.250 1.250 26 C -0.074 4.074 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.381 0.619 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -0.745 1.612 2.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.583 6.583 9 C 0.069 3.931 10 C -0.115 4.115 11 C -0.313 4.313 12 S 0.372 5.628 13 C -0.337 4.337 14 C -0.073 4.073 15 C -0.030 4.030 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.072 4.072 20 C -0.193 4.193 21 O -0.350 6.350 22 Si 0.769 3.231 23 H -0.170 1.170 24 H -0.181 1.181 25 H -0.174 1.174 26 C -0.092 4.092 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.194 0.806 45 H 0.184 0.816 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.138 0.862 49 H 0.095 0.905 50 H 0.228 0.772 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.781 -1.551 0.604 1.839 hybrid contribution 0.617 1.067 1.143 1.681 sum 1.398 -0.484 1.747 2.289 Atomic orbital electron populations 1.21511 0.93801 1.01989 1.01807 1.25769 1.00682 1.02627 1.12647 1.21556 1.00777 0.94906 1.02161 1.21510 1.00620 1.00200 0.96755 0.76697 0.63090 0.53304 0.65002 1.27040 1.07073 1.09450 1.17825 1.27030 1.25005 1.04778 1.04506 1.85287 1.79420 1.46041 1.47530 1.20580 0.97539 0.87921 0.87018 1.18686 1.01792 0.95951 0.95094 1.25353 1.04192 0.97712 1.04031 1.84419 1.50965 1.08804 1.18579 1.25711 1.04753 1.01548 1.01723 1.17485 1.01129 0.92965 0.95701 1.18441 0.93651 0.99416 0.91443 1.21307 0.93563 0.98789 0.98980 1.21015 1.00062 0.99792 0.91824 1.21045 0.95722 0.99193 0.98105 1.19187 0.94368 0.99924 0.93737 1.24736 0.95038 0.98678 1.00800 1.86510 1.39066 1.68518 1.40866 0.85746 0.78262 0.81902 0.77212 1.17018 1.18128 1.17352 1.21023 0.99325 0.98484 0.90394 0.92676 0.92806 0.92192 0.92513 0.92498 0.92499 0.92191 0.92810 0.92695 0.91382 0.90723 0.90840 0.90823 0.90671 0.91414 0.91301 0.91253 0.80627 0.81560 0.85436 0.85188 0.86182 0.90507 0.77210 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.10 0.53 -90.62 -0.05 0.05 16 3 C -0.14 0.07 7.85 37.16 0.29 0.36 16 4 C -0.13 0.00 7.85 37.16 0.29 0.29 16 5 Si 1.29 -1.08 8.45 -169.99 -1.44 -2.52 16 6 C -0.51 0.05 8.50 101.05 0.86 0.91 16 7 C -0.51 0.36 8.50 101.05 0.86 1.22 16 8 O -0.62 -0.34 7.42 -35.23 -0.26 -0.60 16 9 C 0.15 0.10 4.46 36.01 0.16 0.26 16 10 C -0.10 -0.19 5.79 -106.00 -0.61 -0.80 16 11 C -0.18 -0.29 10.41 28.93 0.30 0.02 16 12 S 0.11 0.10 23.32 -107.50 -2.51 -2.40 16 13 C -0.20 -0.22 10.85 29.44 0.32 0.10 16 14 C -0.06 -0.10 5.36 -106.60 -0.57 -0.68 16 15 C -0.03 -0.04 5.30 -104.90 -0.56 -0.60 16 16 C -0.11 -0.06 8.58 -39.24 -0.34 -0.40 16 17 C -0.11 -0.02 10.03 -39.63 -0.40 -0.41 16 18 C -0.12 -0.10 8.67 -39.52 -0.34 -0.45 16 19 C -0.07 -0.09 5.42 -104.67 -0.57 -0.66 16 20 C -0.08 0.04 2.81 36.01 0.10 0.14 16 21 O -0.54 -0.07 12.74 -35.23 -0.45 -0.52 16 22 Si 0.95 -0.68 25.06 -169.99 -4.26 -4.94 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 24 H -0.26 0.14 7.11 56.52 0.40 0.54 16 25 H -0.25 0.06 7.11 56.52 0.40 0.46 16 26 C -0.07 -0.12 9.15 -39.25 -0.36 -0.48 16 27 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 28 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 33 H 0.06 0.00 7.97 -51.93 -0.41 -0.41 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 36 H 0.07 0.00 7.48 -51.93 -0.39 -0.39 16 37 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 38 H 0.07 0.02 7.79 -51.93 -0.40 -0.38 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 42 H 0.07 -0.06 5.22 -51.93 -0.27 -0.33 16 43 H 0.07 0.02 7.21 -51.93 -0.37 -0.35 16 44 H 0.18 0.15 7.48 -52.49 -0.39 -0.24 16 45 H 0.17 -0.08 8.06 -52.49 -0.42 -0.51 16 46 H 0.13 -0.11 6.55 -52.48 -0.34 -0.45 16 47 H 0.13 -0.26 8.06 -52.49 -0.42 -0.69 16 48 H 0.12 -0.05 4.87 -52.49 -0.26 -0.30 16 49 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 50 H 0.38 -1.61 8.74 45.56 0.40 -1.21 16 51 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 416.06 15.07 6.27 6.27 Total: 0.00 -4.92 416.06 -10.79 -15.71 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -7.83 Total: -10.13 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.32 Total: -0.86 kcal Atomic # 8 Polarization: -0.41 SS G_CDS: -0.71 Total: -1.12 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.70 Total: -7.46 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.51 Total: -2.40 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -4.92 -10.79 -15.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.802 kcal (2) G-P(sol) polarization free energy of solvation -4.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds