Wall clock time and date at job start Mon Mar 8 2021 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33054 * 122.54424 * 359.70898 * 10 9 8 12 12 S 1.75812 * 109.93016 * 179.90583 * 11 10 9 13 13 C 1.75851 * 91.15248 * 0.30129 * 12 11 10 14 14 C 1.34571 * 109.54203 * 359.83111 * 13 12 11 15 15 C 1.48364 * 122.77108 * 180.02562 * 14 13 12 16 16 C 1.39336 * 120.11989 * 129.70104 * 15 14 13 17 17 C 1.38043 * 119.87668 * 179.79420 * 16 15 14 18 18 C 1.38305 * 120.11937 * 0.46180 * 17 16 15 19 19 C 1.38350 * 120.24601 * 359.79056 * 18 17 16 20 20 C 1.50704 * 119.93730 * 179.97438 * 19 18 17 21 21 O 1.42892 * 109.47043 * 120.02498 * 20 19 18 22 22 Si 1.86303 * 109.46934 * 0.02562 * 20 19 18 23 23 H 1.48498 * 109.47050 * 60.00075 * 22 20 19 24 24 H 1.48500 * 109.46806 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47182 * 299.99698 * 22 20 19 26 26 C 1.37989 * 120.12775 * 359.97438 * 19 18 17 27 27 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 32 32 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 33 33 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 34 34 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 35 35 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 38 38 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 39 39 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 40 40 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 41 41 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 43 43 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 44 44 H 1.08002 * 125.03687 * 0.02562 * 11 10 9 45 45 H 1.07999 * 125.23376 * 179.86675 * 13 12 11 46 46 H 1.08005 * 120.06471 * 0.02562 * 16 15 14 47 47 H 1.07999 * 119.93829 * 180.21222 * 17 16 15 48 48 H 1.07995 * 119.87451 * 179.76852 * 18 17 16 49 49 H 1.09004 * 109.47230 * 240.02334 * 20 19 18 50 50 H 0.96702 * 114.00237 * 180.02562 * 21 20 19 51 51 H 1.07992 * 120.06743 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7047 -4.9696 1.5345 12 16 0.2442 -6.6530 1.7466 13 6 1.1381 -6.7440 3.2583 14 6 1.7151 -5.5551 3.5123 15 6 2.5428 -5.3055 4.7180 16 6 3.8058 -4.7305 4.5922 17 6 4.5700 -4.4965 5.7178 18 6 4.0881 -4.8406 6.9677 19 6 2.8369 -5.4166 7.0979 20 6 2.3189 -5.7893 8.4631 21 8 1.1088 -5.0758 8.7245 22 14 3.5904 -5.3483 9.7514 23 1 3.8567 -3.8881 9.7046 24 1 3.0802 -5.7161 11.0966 25 1 4.8481 -6.0899 9.4798 26 6 2.0625 -5.6506 5.9800 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.8931 -0.5142 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3931 2.4104 42 1 3.1176 -3.2253 2.6757 43 1 1.6639 -2.7113 3.5651 44 1 0.4105 -4.3464 0.7029 45 1 1.2130 -7.6196 3.8861 46 1 4.1846 -4.4648 3.6163 47 1 5.5476 -4.0477 5.6218 48 1 4.6908 -4.6592 7.8452 49 1 2.1234 -6.8611 8.4975 50 1 0.7183 -5.2667 9.5883 51 1 1.0862 -6.1006 6.0827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_11651798_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:34:10 Heat of formation + Delta-G solvation = -65.697115 kcal Electronic energy + Delta-G solvation = -28687.541029 eV Core-core repulsion = 24994.881294 eV Total energy + Delta-G solvation = -3692.659736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97446 -39.34949 -37.62693 -37.07413 -36.82109 -32.88064 -32.40561 -30.30987 -29.39451 -29.05902 -27.83142 -27.69865 -27.37244 -26.59340 -24.71392 -22.70355 -22.13567 -20.41612 -19.39957 -18.76778 -18.43852 -17.85163 -17.21942 -16.83022 -16.58625 -16.17324 -15.87150 -15.78354 -15.43326 -14.93619 -14.85075 -14.73877 -14.53279 -14.36750 -14.15880 -13.97448 -13.69874 -13.64344 -13.56808 -13.34965 -13.34353 -13.28630 -13.17320 -12.94551 -12.91993 -12.84834 -12.39652 -12.36342 -12.22607 -11.96791 -11.88751 -11.73894 -11.71129 -11.65253 -11.56836 -11.32236 -10.41216 -10.37247 -10.17140 -10.05761 -9.77114 -9.51543 -9.05553 -0.14343 0.30419 0.40313 0.71708 1.04368 1.17260 1.46009 1.47118 1.51596 1.64785 1.79071 1.91060 2.11918 2.46717 2.70454 3.47320 3.67675 3.85630 3.99092 4.03549 4.06496 4.12610 4.13374 4.14625 4.31987 4.39741 4.42311 4.47260 4.50506 4.57613 4.66485 4.73499 4.73879 4.77811 4.80041 4.83001 4.83260 4.84528 4.98444 5.01093 5.02995 5.10168 5.10677 5.14997 5.24444 5.28677 5.36009 5.42083 5.45553 5.46470 5.52136 5.54039 5.59209 5.64898 5.69494 5.95372 6.81351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.378 4.378 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.315 2.685 6 C -0.521 4.521 7 C -0.516 4.516 8 O -0.633 6.633 9 C 0.142 3.858 10 C -0.112 4.112 11 C -0.190 4.190 12 S 0.110 5.890 13 C -0.206 4.206 14 C -0.069 4.069 15 C -0.035 4.035 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.084 4.084 21 O -0.563 6.563 22 Si 0.979 3.021 23 H -0.269 1.269 24 H -0.258 1.258 25 H -0.256 1.256 26 C -0.086 4.086 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.179 0.821 45 H 0.179 0.821 46 H 0.140 0.860 47 H 0.152 0.848 48 H 0.129 0.871 49 H 0.094 0.906 50 H 0.398 0.602 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -0.803 2.016 2.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.421 4.421 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.446 2.554 6 C -0.622 4.622 7 C -0.618 4.618 8 O -0.592 6.592 9 C 0.065 3.935 10 C -0.123 4.123 11 C -0.325 4.325 12 S 0.376 5.624 13 C -0.341 4.341 14 C -0.082 4.082 15 C -0.037 4.037 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.154 4.154 19 C -0.085 4.085 20 C -0.194 4.194 21 O -0.372 6.372 22 Si 0.803 3.197 23 H -0.194 1.194 24 H -0.182 1.182 25 H -0.180 1.180 26 C -0.105 4.105 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.196 0.804 45 H 0.196 0.804 46 H 0.158 0.842 47 H 0.170 0.830 48 H 0.146 0.854 49 H 0.112 0.888 50 H 0.248 0.752 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.508 -1.615 1.019 2.433 hybrid contribution 0.361 1.098 1.027 1.546 sum 1.869 -0.516 2.045 2.818 Atomic orbital electron populations 1.21545 0.94342 1.01796 1.01767 1.25862 1.00300 1.02986 1.12989 1.21608 1.01370 0.94678 1.02188 1.21541 1.01082 1.00034 0.96716 0.76214 0.62888 0.52400 0.63934 1.27153 1.06767 1.09959 1.18338 1.27057 1.24804 1.05195 1.04784 1.85278 1.79776 1.46609 1.47568 1.20681 0.98370 0.87428 0.87055 1.18885 1.01810 0.96570 0.95083 1.25475 1.04542 0.98129 1.04340 1.84351 1.50919 1.08533 1.18587 1.25932 1.04436 1.01935 1.01828 1.17602 1.01486 0.93173 0.95927 1.18532 0.94110 0.99792 0.91284 1.21493 0.93292 0.98612 0.99773 1.21309 1.00867 0.99196 0.91395 1.21276 0.95869 0.99364 0.98853 1.19464 0.94659 0.99918 0.94473 1.24806 0.95000 0.99605 0.99994 1.86463 1.39347 1.68938 1.42439 0.85279 0.77597 0.79991 0.76794 1.19409 1.18212 1.18000 1.21087 0.99500 0.99162 0.90743 0.92345 0.93243 0.92473 0.91678 0.93044 0.91961 0.92423 0.93307 0.92012 0.91447 0.90260 0.91419 0.90860 0.90222 0.90851 0.89856 0.91172 0.80354 0.80382 0.84215 0.83026 0.85369 0.88824 0.75220 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 7.85 71.98 0.56 0.44 16 2 C -0.38 0.14 0.53 -10.80 -0.01 0.14 16 3 C -0.14 0.16 7.85 71.98 0.56 0.72 16 4 C -0.14 -0.03 7.85 71.98 0.56 0.54 16 5 Si 1.32 -2.39 8.45 68.60 0.58 -1.81 16 6 C -0.52 0.10 8.50 113.37 0.96 1.06 16 7 C -0.52 1.14 8.50 113.37 0.96 2.10 16 8 O -0.63 -0.79 7.42 -148.98 -1.11 -1.90 16 9 C 0.14 0.20 4.46 71.24 0.32 0.51 16 10 C -0.11 -0.45 5.79 -20.75 -0.12 -0.57 16 11 C -0.19 -0.73 10.41 66.66 0.69 -0.03 16 12 S 0.11 0.27 23.32 -56.49 -1.32 -1.05 16 13 C -0.21 -0.54 10.85 66.98 0.73 0.19 16 14 C -0.07 -0.27 5.36 -21.15 -0.11 -0.38 16 15 C -0.03 -0.12 5.30 -20.04 -0.11 -0.22 16 16 C -0.11 -0.10 8.58 22.49 0.19 0.10 16 17 C -0.11 0.03 10.03 22.24 0.22 0.25 16 18 C -0.14 -0.22 8.67 22.31 0.19 -0.02 16 19 C -0.09 -0.24 5.42 -19.90 -0.11 -0.35 16 20 C -0.08 0.08 2.81 71.24 0.20 0.28 16 21 O -0.56 -0.15 12.74 -148.98 -1.90 -2.05 16 22 Si 0.98 -1.57 25.06 68.60 1.72 0.15 16 23 H -0.27 -0.51 7.11 99.48 0.71 0.19 16 24 H -0.26 0.44 7.11 99.48 0.71 1.14 16 25 H -0.26 0.21 7.11 99.48 0.71 0.91 16 26 C -0.09 -0.33 9.15 22.49 0.21 -0.12 16 27 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 28 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.07 7.97 -2.39 -0.02 0.05 16 30 H 0.06 -0.19 7.79 -2.38 -0.02 -0.20 16 31 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 33 H 0.06 0.03 7.97 -2.39 -0.02 0.02 16 34 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.08 7.79 -2.38 -0.02 -0.10 16 36 H 0.07 0.00 7.48 -2.39 -0.02 -0.02 16 37 H 0.08 -0.10 7.79 -2.39 -0.02 -0.12 16 38 H 0.07 0.07 7.79 -2.39 -0.02 0.05 16 39 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 40 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 41 H 0.07 -0.23 7.48 -2.39 -0.02 -0.25 16 42 H 0.08 -0.17 5.22 -2.38 -0.01 -0.18 16 43 H 0.07 0.06 7.21 -2.39 -0.02 0.05 16 44 H 0.18 0.45 7.48 -2.91 -0.02 0.43 16 45 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 46 H 0.14 -0.33 6.55 -2.91 -0.02 -0.35 16 47 H 0.15 -0.81 8.06 -2.91 -0.02 -0.83 16 48 H 0.13 -0.11 4.87 -2.91 -0.01 -0.13 16 49 H 0.09 -0.45 7.96 -2.39 -0.02 -0.47 16 50 H 0.40 -3.46 8.74 -74.06 -0.65 -4.11 16 51 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 Total: 0.00 -11.13 416.06 4.92 -6.21 By element: Atomic # 1 Polarization: -5.21 SS G_CDS: 1.02 Total: -4.19 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.92 Total: 4.63 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -3.00 Total: -3.95 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.30 Total: -1.66 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.32 Total: -1.05 kcal Total: -11.13 4.92 -6.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.483 kcal (2) G-P(sol) polarization free energy of solvation -11.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds