Wall clock time and date at job start Mon Mar 8 2021 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47319 * 2 1 4 4 C 1.86302 * 109.46840 * 240.00155 * 2 1 3 5 5 C 1.86799 * 109.47129 * 120.00217 * 2 1 3 6 6 C 1.37993 * 120.06142 * 264.55734 * 5 2 1 7 7 C 1.38343 * 120.12422 * 179.97438 * 6 5 2 8 8 C 1.38294 * 120.24309 * 0.03894 * 7 6 5 9 9 C 1.38041 * 120.12227 * 359.95810 * 8 7 6 10 10 C 1.39323 * 119.87653 * 0.02562 * 9 8 7 11 11 C 1.48394 * 120.12136 * 180.02562 * 10 9 8 12 12 C 1.39310 * 120.11576 * 118.87977 * 11 10 9 13 13 C 1.38037 * 119.87652 * 180.02562 * 12 11 10 14 14 C 1.38301 * 120.12174 * 359.97438 * 13 12 11 15 15 C 1.38339 * 120.24022 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.93762 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47267 * 119.99832 * 16 15 14 18 18 Si 1.86297 * 109.47288 * 359.97438 * 16 15 14 19 19 H 1.48495 * 109.47346 * 59.99736 * 18 16 15 20 20 H 1.48505 * 109.47425 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47127 * 300.00209 * 18 16 15 22 22 C 1.37997 * 120.12700 * 359.76432 * 15 14 13 23 23 H 1.09000 * 109.46785 * 304.85844 * 1 2 3 24 24 H 1.09000 * 109.47321 * 64.85356 * 1 2 3 25 25 H 1.08998 * 109.47438 * 184.85672 * 1 2 3 26 26 H 1.08997 * 109.47369 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46943 * 300.00555 * 3 2 1 28 28 H 1.09003 * 109.46973 * 60.00159 * 3 2 1 29 29 H 1.09004 * 109.46694 * 296.10059 * 4 2 1 30 30 H 1.09000 * 109.47415 * 56.10350 * 4 2 1 31 31 H 1.08996 * 109.46980 * 176.10458 * 4 2 1 32 32 H 1.08005 * 119.94047 * 359.97438 * 6 5 2 33 33 H 1.07997 * 119.87801 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.94442 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.06570 * 180.29528 * 9 8 7 36 36 H 1.08001 * 120.06575 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.94065 * 180.02562 * 13 12 11 38 38 H 1.08001 * 119.88046 * 180.02562 * 14 13 12 39 39 H 1.09005 * 109.47300 * 240.00080 * 16 15 14 40 40 H 0.96695 * 114.00327 * 300.00052 * 17 16 15 41 41 H 1.07995 * 120.06990 * 180.25531 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.8229 -0.1580 2.6514 7 6 3.2837 -0.8089 3.7818 8 6 3.4098 -2.1861 3.7899 9 6 3.0753 -2.9189 2.6689 10 6 2.6104 -2.2686 1.5278 11 6 2.2487 -3.0511 0.3199 12 6 0.9458 -3.0154 -0.1718 13 6 0.6146 -3.7456 -1.2954 14 6 1.5737 -4.5113 -1.9331 15 6 2.8690 -4.5504 -1.4490 16 6 3.9088 -5.3866 -2.1495 17 8 4.9767 -4.5465 -2.5919 18 14 3.1371 -6.2358 -3.6172 19 1 2.6069 -5.2157 -4.5570 20 1 4.1615 -7.0603 -4.3072 21 1 2.0275 -7.1089 -3.1570 22 6 3.2122 -3.8209 -0.3290 23 1 -0.3633 0.5874 0.8433 24 1 -0.3634 0.4367 -0.9303 25 1 -0.3634 -1.0239 0.0870 26 1 3.5740 1.7565 -0.0005 27 1 2.1207 2.2703 -0.8899 28 1 2.1207 2.2703 0.8900 29 1 2.1787 -1.9241 -1.4869 30 1 2.0647 -0.4063 -2.4098 31 1 3.5716 -0.8182 -1.5568 32 1 2.7269 0.9178 2.6503 33 1 3.5460 -0.2395 4.6611 34 1 3.7704 -2.6893 4.6749 35 1 3.1696 -3.9948 2.6778 36 1 0.1959 -2.4181 0.3256 37 1 -0.3951 -3.7183 -1.6778 38 1 1.3104 -5.0808 -2.8122 39 1 4.2976 -6.1358 -1.4598 40 1 4.7031 -3.8550 -3.2099 41 1 4.2247 -3.8489 0.0457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651798_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:46 Heat of formation + Delta-G solvation = -16.885518 kcal Electronic energy + Delta-G solvation = -20762.313740 eV Core-core repulsion = 17923.451055 eV Total energy + Delta-G solvation = -2838.862685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12105 -39.47443 -37.61487 -33.93756 -32.48297 -31.65642 -29.99061 -29.44780 -28.55668 -28.24683 -26.67086 -24.48978 -23.25323 -22.64813 -21.45881 -18.66707 -17.77214 -17.37684 -16.60073 -16.26356 -16.10850 -15.71739 -15.46527 -14.97862 -14.83336 -14.61369 -14.31857 -14.24341 -14.11590 -13.96770 -13.55634 -13.41058 -13.31320 -13.12174 -12.98789 -12.69254 -12.55150 -12.43668 -12.20289 -11.98287 -11.82199 -11.59024 -11.03232 -10.83165 -10.82884 -10.46621 -10.03997 -9.78905 -9.69699 -9.26129 0.00518 0.31960 0.46632 0.65965 1.13484 1.41700 1.49129 1.72986 1.88644 1.89551 1.98896 2.59786 2.65819 2.97893 3.43238 3.63852 3.67110 3.95794 4.05037 4.12635 4.21411 4.26032 4.50089 4.53152 4.56651 4.64886 4.70354 4.73601 4.75394 4.76973 4.86353 4.89254 4.91406 5.00517 5.03331 5.13401 5.35932 5.43377 5.45195 5.48147 5.56381 5.56889 5.65454 5.68909 5.71436 5.94128 6.15314 6.53601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.038 2.962 3 C -0.446 4.446 4 C -0.460 4.460 5 C -0.354 4.354 6 C -0.089 4.089 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.020 4.020 11 C -0.045 4.045 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.117 4.117 16 C -0.080 4.080 17 O -0.537 6.537 18 Si 0.948 3.052 19 H -0.251 1.251 20 H -0.254 1.254 21 H -0.250 1.250 22 C -0.074 4.074 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.377 0.623 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 0.671 -0.407 1.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.230 2.770 3 C -0.554 4.554 4 C -0.567 4.567 5 C -0.396 4.396 6 C -0.107 4.107 7 C -0.146 4.146 8 C -0.127 4.127 9 C -0.134 4.134 10 C -0.020 4.020 11 C -0.045 4.045 12 C -0.133 4.133 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.117 4.117 16 C -0.191 4.191 17 O -0.342 6.342 18 Si 0.771 3.229 19 H -0.174 1.174 20 H -0.178 1.178 21 H -0.174 1.174 22 C -0.093 4.093 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.224 0.776 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.587 -0.167 -0.674 1.732 hybrid contribution -0.074 0.516 0.357 0.632 sum -1.661 0.349 -0.317 1.726 Atomic orbital electron populations 1.26406 1.20030 1.04825 1.04620 0.78411 0.67448 0.66448 0.64664 1.26097 1.06462 1.18366 1.04521 1.26624 1.06312 1.09644 1.14149 1.27396 1.03992 0.97751 1.10415 1.21048 0.97157 0.99721 0.92802 1.21320 1.00021 0.94755 0.98533 1.21138 0.99159 0.94309 0.98074 1.21267 0.99470 0.99741 0.92875 1.18582 0.98241 0.92884 0.92288 1.18813 0.93704 0.97305 0.94662 1.21553 0.95860 0.99388 0.96475 1.21025 0.99588 0.96557 0.95569 1.21109 0.93170 0.99804 1.00131 1.20239 0.94702 0.99595 0.97182 1.24979 0.91405 0.96719 1.06019 1.86518 1.33182 1.47996 1.66535 0.85700 0.79457 0.80292 0.77427 1.17412 1.17824 1.17429 1.21020 0.99197 0.94907 0.94127 0.91131 0.90881 0.90664 0.91030 0.90940 0.91203 0.89303 0.91455 0.91332 0.86028 0.86234 0.86012 0.86149 0.84426 0.85219 0.86170 0.86398 0.77636 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.50 8.64 101.05 0.87 1.38 16 2 Si 1.04 -1.19 10.42 -169.99 -1.77 -2.97 16 3 C -0.45 0.37 8.39 101.05 0.85 1.22 16 4 C -0.46 0.10 8.12 101.05 0.82 0.92 16 5 C -0.35 -0.30 4.61 -39.26 -0.18 -0.48 16 6 C -0.09 -0.08 9.28 -39.63 -0.37 -0.45 16 7 C -0.13 -0.13 10.04 -39.52 -0.40 -0.53 16 8 C -0.11 -0.13 10.03 -39.63 -0.40 -0.53 16 9 C -0.12 -0.18 9.69 -39.25 -0.38 -0.56 16 10 C -0.02 -0.03 5.32 -104.89 -0.56 -0.59 16 11 C -0.04 -0.04 3.13 -104.90 -0.33 -0.37 16 12 C -0.12 -0.01 6.37 -39.26 -0.25 -0.26 16 13 C -0.11 0.04 9.36 -39.63 -0.37 -0.33 16 14 C -0.12 0.00 8.43 -39.52 -0.33 -0.33 16 15 C -0.12 -0.04 5.18 -104.67 -0.54 -0.58 16 16 C -0.08 0.03 2.82 36.01 0.10 0.13 16 17 O -0.54 -0.21 12.76 -35.23 -0.45 -0.66 16 18 Si 0.95 -0.55 25.07 -169.99 -4.26 -4.81 16 19 H -0.25 0.11 7.11 56.52 0.40 0.51 16 20 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 21 H -0.25 0.02 7.11 56.52 0.40 0.42 16 22 C -0.07 -0.07 8.61 -39.25 -0.34 -0.41 16 23 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 25 H 0.07 -0.10 4.84 -51.93 -0.25 -0.36 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 28 H 0.07 -0.09 7.65 -51.93 -0.40 -0.48 16 29 H 0.09 0.01 2.54 -51.93 -0.13 -0.12 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.12 -0.12 7.27 -52.48 -0.38 -0.50 16 33 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 34 H 0.12 -0.06 8.06 -52.48 -0.42 -0.48 16 35 H 0.12 0.06 8.06 -52.49 -0.42 -0.36 16 36 H 0.14 -0.13 4.86 -52.49 -0.26 -0.39 16 37 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 38 H 0.12 -0.14 4.87 -52.49 -0.26 -0.40 16 39 H 0.12 -0.13 7.96 -51.93 -0.41 -0.55 16 40 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 41 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 LS Contribution 324.35 15.07 4.89 4.89 Total: 0.00 -4.27 324.35 -8.48 -12.75 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -5.08 Total: -7.45 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.80 Total: -1.75 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -6.03 Total: -7.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -4.27 -8.48 -12.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651798_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.137 kcal (2) G-P(sol) polarization free energy of solvation -4.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds