Wall clock time and date at job start Mon Mar 8 2021 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46791 * 2 1 4 4 C 1.52999 * 109.47251 * 240.00202 * 2 1 3 5 5 Si 1.86297 * 109.47477 * 120.00099 * 2 1 3 6 6 C 1.86304 * 109.47019 * 300.00125 * 5 2 1 7 7 C 1.86302 * 109.47386 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.46969 * 59.99719 * 5 2 1 9 9 C 1.42903 * 113.99874 * 180.02562 * 8 5 2 10 10 C 1.50707 * 109.47156 * 180.02562 * 9 8 5 11 11 C 1.33633 * 122.05811 * 359.97438 * 10 9 8 12 12 S 1.76237 * 108.27316 * 180.02562 * 11 10 9 13 13 C 1.76177 * 89.86012 * 0.02562 * 12 11 10 14 14 C 1.47142 * 125.48436 * 180.02562 * 13 12 11 15 15 C 1.35095 * 125.28533 * 0.02562 * 14 13 12 16 16 C 1.37811 * 114.67230 * 179.97438 * 15 14 13 17 17 C 1.33707 * 115.09401 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.10655 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47417 * 300.00270 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 180.02562 * 18 17 16 21 21 H 1.48506 * 109.47302 * 59.99966 * 20 18 17 22 22 H 1.48503 * 109.47334 * 300.00099 * 20 18 17 23 23 H 1.48500 * 109.47376 * 180.02562 * 20 18 17 24 24 S 1.75861 * 109.78883 * 0.26407 * 17 16 15 25 25 N 1.30476 * 109.02942 * 0.25866 * 13 12 11 26 26 H 1.09001 * 109.46855 * 299.99607 * 1 2 3 27 27 H 1.08998 * 109.47731 * 59.99778 * 1 2 3 28 28 H 1.08998 * 109.46611 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47124 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47281 * 299.99794 * 3 2 1 31 31 H 1.09001 * 109.47100 * 60.00544 * 3 2 1 32 32 H 1.08995 * 109.46857 * 300.00102 * 4 2 1 33 33 H 1.08998 * 109.46737 * 59.99411 * 4 2 1 34 34 H 1.08995 * 109.47444 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47295 * 180.02562 * 6 5 2 36 36 H 1.09000 * 109.47301 * 299.99858 * 6 5 2 37 37 H 1.08995 * 109.47291 * 59.99752 * 6 5 2 38 38 H 1.09001 * 109.46762 * 300.00182 * 7 5 2 39 39 H 1.08998 * 109.46795 * 59.99596 * 7 5 2 40 40 H 1.09000 * 109.46949 * 179.97438 * 7 5 2 41 41 H 1.08997 * 109.47469 * 60.00103 * 9 8 5 42 42 H 1.09004 * 109.47437 * 300.00206 * 9 8 5 43 43 H 1.08001 * 125.86139 * 0.02562 * 11 10 9 44 44 H 1.07994 * 122.66577 * 359.97438 * 15 14 13 45 45 H 1.07992 * 122.45710 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.46793 * 60.00723 * 18 17 16 47 47 H 0.96699 * 114.00604 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6519 10 6 1.4723 -4.5781 2.5486 11 6 0.7081 -4.9631 1.5221 12 16 0.2619 -6.6503 1.7676 13 6 1.1761 -6.6684 3.2736 14 6 1.3179 -7.8243 4.1729 15 6 0.7666 -9.0413 3.9724 16 6 1.0418 -9.9666 4.9558 17 6 1.8103 -9.5207 5.9549 18 6 2.2480 -10.3381 7.1429 19 8 1.0977 -10.7913 7.8593 20 14 3.3033 -9.2889 8.2638 21 1 2.5176 -8.1184 8.7308 22 1 4.4989 -8.8174 7.5198 23 1 3.7352 -10.0945 9.4342 24 16 2.2269 -7.8346 5.6787 25 7 1.7030 -5.4903 3.4656 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8938 -0.5135 3.9322 36 1 1.8934 1.0277 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3778 -1.3911 0.6314 39 1 4.3770 0.1503 1.5216 40 1 4.3774 -1.3910 2.4116 41 1 1.6639 -2.7113 3.5652 42 1 3.1176 -3.2252 2.6758 43 1 0.4144 -4.3462 0.6857 44 1 0.1584 -9.2707 3.1099 45 1 0.6650 -10.9781 4.9217 46 1 2.8245 -11.1974 6.8001 47 1 1.3046 -11.3249 8.6387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12175798_12621894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:52:16 Heat of formation + Delta-G solvation = -53.784957 kcal Electronic energy + Delta-G solvation = -26020.051546 eV Core-core repulsion = 22351.634696 eV Total energy + Delta-G solvation = -3668.416850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81084 -39.25790 -37.92556 -37.44949 -36.88935 -33.07514 -30.80129 -29.53066 -29.13054 -28.03750 -27.90961 -27.63789 -27.42615 -24.46291 -23.62769 -20.78603 -20.62772 -20.29671 -18.93241 -18.62384 -17.99709 -17.28080 -16.70982 -16.66758 -16.38123 -16.17106 -15.79442 -15.25852 -15.07882 -14.90567 -14.76676 -14.73667 -14.32988 -14.12542 -14.03500 -13.80514 -13.75592 -13.56524 -13.43504 -13.27778 -13.27224 -12.97830 -12.97275 -12.68434 -12.46062 -12.40046 -12.33623 -12.13197 -12.08105 -11.78629 -11.69816 -11.66999 -11.47984 -10.77756 -10.75508 -10.48031 -10.43884 -10.13108 -10.09762 -9.49327 -9.02428 -0.91014 -0.09437 0.28120 0.61582 0.71338 0.86534 1.08356 1.27610 1.39396 1.44328 1.55273 1.67987 1.84924 1.98781 2.04098 2.32047 2.92799 3.29571 3.74236 3.85126 4.06657 4.07043 4.17586 4.26278 4.28576 4.35031 4.37561 4.42733 4.46461 4.53544 4.64828 4.69845 4.70222 4.70795 4.77332 4.80915 4.92196 4.95269 5.05579 5.05843 5.06657 5.15162 5.18585 5.27941 5.31631 5.37638 5.38540 5.43679 5.51220 5.56782 6.46415 6.65656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.293 2.707 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.164 3.836 10 C 0.058 3.942 11 C -0.211 4.211 12 S 0.114 5.886 13 C 0.136 3.864 14 C -0.125 4.125 15 C -0.104 4.104 16 C -0.101 4.101 17 C -0.177 4.177 18 C -0.039 4.039 19 O -0.541 6.541 20 Si 0.883 3.117 21 H -0.229 1.229 22 H -0.231 1.231 23 H -0.228 1.228 24 S 0.179 5.821 25 N -0.462 5.462 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.192 0.808 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -1.677 0.383 2.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.085 3.915 10 C -0.074 4.074 11 C -0.350 4.350 12 S 0.368 5.632 13 C -0.139 4.139 14 C -0.246 4.246 15 C -0.140 4.140 16 C -0.131 4.131 17 C -0.296 4.296 18 C -0.152 4.152 19 O -0.347 6.347 20 Si 0.703 3.297 21 H -0.152 1.152 22 H -0.153 1.153 23 H -0.150 1.150 24 S 0.445 5.555 25 N -0.178 5.178 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.209 0.791 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.106 0.894 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.654 -0.515 0.976 1.988 hybrid contribution -0.362 -0.270 -0.602 0.753 sum 1.292 -0.785 0.374 1.557 Atomic orbital electron populations 1.21514 0.93773 1.01966 1.01871 1.25773 1.00694 1.02677 1.12588 1.21556 1.00818 0.94826 1.02205 1.21512 1.00672 1.00162 0.96773 0.76619 0.63043 0.52768 0.65076 1.27037 1.07082 1.09564 1.17751 1.27035 1.24907 1.04857 1.04619 1.85229 1.79616 1.46233 1.47406 1.20157 0.98000 0.86003 0.87321 1.19805 1.00148 0.96371 0.91117 1.26840 1.05353 0.97170 1.05664 1.85033 1.49292 1.09388 1.19440 1.24463 0.99896 0.93188 0.96344 1.21805 1.08182 0.94649 0.99951 1.20351 1.01379 0.91105 1.01153 1.19871 0.98921 1.01533 0.92822 1.24061 1.07117 0.97622 1.00767 1.23947 0.94231 1.01826 0.95223 1.86515 1.30441 1.73617 1.44171 0.86418 0.80219 0.81762 0.81349 1.15159 1.15340 1.15010 1.84508 1.49368 1.05828 1.15787 1.66343 1.22856 0.99562 1.29000 0.92648 0.92753 0.92228 0.92470 0.92450 0.92471 0.92225 0.92761 0.92646 0.91331 0.90599 0.90800 0.90800 0.90595 0.91329 0.90410 0.90415 0.79137 0.83555 0.83169 0.89367 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.26 0.53 -90.62 -0.05 0.21 16 3 C -0.14 0.12 7.85 37.16 0.29 0.41 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -1.67 8.45 -169.99 -1.44 -3.11 16 6 C -0.51 0.37 8.50 101.05 0.86 1.23 16 7 C -0.51 0.40 8.50 101.05 0.86 1.26 16 8 O -0.63 -0.04 7.41 -35.23 -0.26 -0.30 16 9 C 0.16 0.11 5.72 36.01 0.21 0.32 16 10 C 0.06 0.16 6.69 -84.39 -0.56 -0.41 16 11 C -0.21 -0.36 10.52 29.12 0.31 -0.05 16 12 S 0.11 0.15 23.02 -107.50 -2.48 -2.32 16 13 C 0.14 0.45 7.47 -14.52 -0.11 0.34 16 14 C -0.12 -0.34 6.42 -37.09 -0.24 -0.58 16 15 C -0.10 -0.12 9.88 -40.86 -0.40 -0.52 16 16 C -0.10 -0.09 10.00 -41.33 -0.41 -0.50 16 17 C -0.18 -0.24 5.76 -35.90 -0.21 -0.45 16 18 C -0.04 0.03 2.95 36.01 0.11 0.13 16 19 O -0.54 0.23 12.83 -35.23 -0.45 -0.22 16 20 Si 0.88 -0.42 26.24 -169.99 -4.46 -4.88 16 21 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 22 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 23 H -0.23 0.26 7.11 56.52 0.40 0.66 16 24 S 0.18 0.46 20.52 -107.50 -2.21 -1.75 16 25 N -0.46 -1.88 10.55 -7.72 -0.08 -1.96 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 -0.02 7.96 -51.93 -0.41 -0.44 16 33 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 34 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.06 7.48 -51.93 -0.39 -0.44 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 -0.03 7.79 -51.93 -0.40 -0.44 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 41 H 0.08 -0.03 7.21 -51.93 -0.37 -0.40 16 42 H 0.08 -0.04 7.22 -51.93 -0.37 -0.41 16 43 H 0.19 0.03 7.50 -52.49 -0.39 -0.36 16 44 H 0.15 -0.11 7.91 -52.49 -0.41 -0.53 16 45 H 0.15 -0.11 8.06 -52.49 -0.42 -0.53 16 46 H 0.09 -0.25 7.96 -51.93 -0.41 -0.67 16 47 H 0.38 -1.91 8.74 45.56 0.40 -1.51 16 LS Contribution 409.08 15.07 6.16 6.16 Total: 0.00 -5.47 409.08 -10.88 -16.35 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: -6.90 Total: -10.04 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 1.23 Total: 2.08 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: -0.71 Total: -0.53 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: -5.90 Total: -7.99 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -4.68 Total: -4.07 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -5.47 -10.88 -16.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175798_12621894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.434 kcal (2) G-P(sol) polarization free energy of solvation -5.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds