Wall clock time and date at job start Mon Mar 8 2021 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46791 * 2 1 4 4 C 1.52999 * 109.47251 * 240.00202 * 2 1 3 5 5 Si 1.86297 * 109.47477 * 120.00099 * 2 1 3 6 6 C 1.86304 * 109.47019 * 300.00125 * 5 2 1 7 7 C 1.86302 * 109.47386 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.46969 * 59.99719 * 5 2 1 9 9 C 1.42903 * 113.99874 * 180.02562 * 8 5 2 10 10 C 1.50707 * 109.47156 * 180.02562 * 9 8 5 11 11 C 1.33633 * 122.05811 * 359.97438 * 10 9 8 12 12 S 1.76237 * 108.27316 * 180.02562 * 11 10 9 13 13 C 1.76177 * 89.86012 * 0.02562 * 12 11 10 14 14 C 1.47142 * 125.48436 * 180.02562 * 13 12 11 15 15 C 1.35095 * 125.28533 * 0.02562 * 14 13 12 16 16 C 1.37811 * 114.67230 * 179.97438 * 15 14 13 17 17 C 1.33707 * 115.09401 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.10655 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47417 * 300.00270 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 180.02562 * 18 17 16 21 21 H 1.48506 * 109.47302 * 59.99966 * 20 18 17 22 22 H 1.48503 * 109.47334 * 300.00099 * 20 18 17 23 23 H 1.48500 * 109.47376 * 180.02562 * 20 18 17 24 24 S 1.75861 * 109.78883 * 0.26407 * 17 16 15 25 25 N 1.30476 * 109.02942 * 0.25866 * 13 12 11 26 26 H 1.09001 * 109.46855 * 299.99607 * 1 2 3 27 27 H 1.08998 * 109.47731 * 59.99778 * 1 2 3 28 28 H 1.08998 * 109.46611 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47124 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47281 * 299.99794 * 3 2 1 31 31 H 1.09001 * 109.47100 * 60.00544 * 3 2 1 32 32 H 1.08995 * 109.46857 * 300.00102 * 4 2 1 33 33 H 1.08998 * 109.46737 * 59.99411 * 4 2 1 34 34 H 1.08995 * 109.47444 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47295 * 180.02562 * 6 5 2 36 36 H 1.09000 * 109.47301 * 299.99858 * 6 5 2 37 37 H 1.08995 * 109.47291 * 59.99752 * 6 5 2 38 38 H 1.09001 * 109.46762 * 300.00182 * 7 5 2 39 39 H 1.08998 * 109.46795 * 59.99596 * 7 5 2 40 40 H 1.09000 * 109.46949 * 179.97438 * 7 5 2 41 41 H 1.08997 * 109.47469 * 60.00103 * 9 8 5 42 42 H 1.09004 * 109.47437 * 300.00206 * 9 8 5 43 43 H 1.08001 * 125.86139 * 0.02562 * 11 10 9 44 44 H 1.07994 * 122.66577 * 359.97438 * 15 14 13 45 45 H 1.07992 * 122.45710 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.46793 * 60.00723 * 18 17 16 47 47 H 0.96699 * 114.00604 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6519 10 6 1.4723 -4.5781 2.5486 11 6 0.7081 -4.9631 1.5221 12 16 0.2619 -6.6503 1.7676 13 6 1.1761 -6.6684 3.2736 14 6 1.3179 -7.8243 4.1729 15 6 0.7666 -9.0413 3.9724 16 6 1.0418 -9.9666 4.9558 17 6 1.8103 -9.5207 5.9549 18 6 2.2480 -10.3381 7.1429 19 8 1.0977 -10.7913 7.8593 20 14 3.3033 -9.2889 8.2638 21 1 2.5176 -8.1184 8.7308 22 1 4.4989 -8.8174 7.5198 23 1 3.7352 -10.0945 9.4342 24 16 2.2269 -7.8346 5.6787 25 7 1.7030 -5.4903 3.4656 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8938 -0.5135 3.9322 36 1 1.8934 1.0277 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3778 -1.3911 0.6314 39 1 4.3770 0.1503 1.5216 40 1 4.3774 -1.3910 2.4116 41 1 1.6639 -2.7113 3.5652 42 1 3.1176 -3.2252 2.6758 43 1 0.4144 -4.3462 0.6857 44 1 0.1584 -9.2707 3.1099 45 1 0.6650 -10.9781 4.9217 46 1 2.8245 -11.1974 6.8001 47 1 1.3046 -11.3249 8.6387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12175798_12621894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:52:15 Heat of formation + Delta-G solvation = -45.864943 kcal Electronic energy + Delta-G solvation = -26019.708108 eV Core-core repulsion = 22351.634696 eV Total energy + Delta-G solvation = -3668.073413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.096 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93156 -39.28336 -37.92014 -37.41137 -36.83359 -33.14328 -30.85702 -29.46898 -29.07035 -28.10803 -27.84503 -27.65865 -27.37857 -24.50633 -23.70417 -20.87671 -20.65053 -20.30581 -18.98648 -18.54595 -18.05037 -17.30104 -16.76941 -16.71580 -16.39800 -16.16862 -15.75842 -15.34279 -15.09193 -14.84647 -14.72119 -14.71155 -14.35409 -14.19339 -14.00805 -13.83730 -13.76331 -13.53135 -13.38061 -13.31629 -13.20281 -12.94885 -12.91754 -12.69669 -12.44375 -12.40003 -12.32891 -12.15349 -12.05548 -11.77575 -11.71753 -11.61832 -11.45486 -10.90020 -10.85766 -10.47046 -10.38658 -10.15721 -10.07767 -9.63331 -9.11770 -1.01969 -0.20114 0.17578 0.52363 0.62536 0.81023 1.09465 1.33564 1.39289 1.44654 1.48477 1.76360 1.88122 1.91340 2.08852 2.37141 2.86094 3.41302 3.75315 3.84146 4.11582 4.12862 4.16299 4.19770 4.29202 4.35252 4.42807 4.46014 4.48260 4.49947 4.72293 4.74762 4.76676 4.77460 4.83335 4.84320 4.87016 5.01126 5.02093 5.10112 5.10736 5.11462 5.19009 5.28909 5.34702 5.37939 5.42040 5.47134 5.58481 5.63442 6.53302 6.79960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.377 4.377 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.324 2.676 6 C -0.521 4.521 7 C -0.520 4.520 8 O -0.632 6.632 9 C 0.160 3.840 10 C 0.041 3.959 11 C -0.216 4.216 12 S 0.145 5.855 13 C 0.117 3.883 14 C -0.143 4.143 15 C -0.096 4.096 16 C -0.105 4.105 17 C -0.176 4.176 18 C -0.033 4.033 19 O -0.557 6.557 20 Si 0.899 3.101 21 H -0.262 1.262 22 H -0.245 1.245 23 H -0.212 1.212 24 S 0.133 5.867 25 N -0.486 5.486 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.204 0.796 44 H 0.165 0.835 45 H 0.171 0.829 46 H 0.118 0.882 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -2.821 0.229 2.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.420 4.420 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.455 2.545 6 C -0.622 4.622 7 C -0.622 4.622 8 O -0.590 6.590 9 C 0.081 3.919 10 C -0.091 4.091 11 C -0.356 4.356 12 S 0.400 5.600 13 C -0.157 4.157 14 C -0.263 4.263 15 C -0.131 4.131 16 C -0.135 4.135 17 C -0.295 4.295 18 C -0.146 4.146 19 O -0.366 6.366 20 Si 0.721 3.279 21 H -0.186 1.186 22 H -0.169 1.169 23 H -0.133 1.133 24 S 0.399 5.601 25 N -0.203 5.203 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.221 0.779 44 H 0.183 0.817 45 H 0.189 0.811 46 H 0.136 0.864 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.446 -1.675 0.836 2.366 hybrid contribution -0.324 0.082 -0.551 0.645 sum 1.122 -1.593 0.285 1.969 Atomic orbital electron populations 1.21551 0.94127 1.01929 1.01863 1.25849 1.00450 1.02933 1.12802 1.21611 1.01319 0.94679 1.02274 1.21549 1.01019 1.00120 0.96769 0.76078 0.62342 0.51904 0.64192 1.27132 1.06948 1.10002 1.18147 1.27120 1.25359 1.05135 1.04555 1.85212 1.79832 1.46702 1.47294 1.20253 0.98488 0.85369 0.87771 1.20119 1.00641 0.97042 0.91258 1.27078 1.05030 0.97666 1.05788 1.84804 1.48316 1.08931 1.17942 1.24696 1.00433 0.93263 0.97343 1.21920 1.09151 0.95262 0.99981 1.20634 1.00518 0.90442 1.01554 1.20135 0.98596 1.02335 0.92392 1.24348 1.06886 0.96586 1.01698 1.23898 0.94095 1.02327 0.94282 1.86464 1.30715 1.74148 1.45321 0.86218 0.79210 0.80762 0.81737 1.18597 1.16907 1.13342 1.84629 1.50593 1.08000 1.16900 1.66362 1.23756 1.00195 1.29951 0.92222 0.93231 0.92287 0.91802 0.92995 0.91843 0.92273 0.93246 0.92170 0.91289 0.90175 0.91098 0.91029 0.90169 0.91257 0.89697 0.89590 0.77894 0.81721 0.81141 0.86430 0.74568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 7.85 71.98 0.56 0.62 16 2 C -0.38 0.48 0.53 -10.79 -0.01 0.47 16 3 C -0.14 0.25 7.85 71.98 0.56 0.81 16 4 C -0.14 0.07 7.85 71.98 0.56 0.64 16 5 Si 1.32 -3.33 8.45 68.60 0.58 -2.75 16 6 C -0.52 0.72 8.50 113.37 0.96 1.68 16 7 C -0.52 0.82 8.50 113.37 0.96 1.78 16 8 O -0.63 -0.21 7.41 -148.98 -1.10 -1.32 16 9 C 0.16 0.32 5.72 71.24 0.41 0.72 16 10 C 0.04 0.26 6.69 41.58 0.28 0.54 16 11 C -0.22 -0.80 10.52 66.77 0.70 -0.10 16 12 S 0.14 0.39 23.02 -56.49 -1.30 -0.91 16 13 C 0.12 0.89 7.47 87.23 0.65 1.54 16 14 C -0.14 -0.91 6.42 23.89 0.15 -0.76 16 15 C -0.10 -0.20 9.88 21.44 0.21 0.02 16 16 C -0.10 -0.11 10.00 21.14 0.21 0.10 16 17 C -0.18 -0.48 5.76 24.66 0.14 -0.33 16 18 C -0.03 0.07 2.95 71.24 0.21 0.28 16 19 O -0.56 1.13 12.83 -148.98 -1.91 -0.78 16 20 Si 0.90 -0.44 26.24 68.60 1.80 1.36 16 21 H -0.26 -1.22 7.11 99.48 0.71 -0.51 16 22 H -0.25 -0.41 7.11 99.48 0.71 0.29 16 23 H -0.21 0.68 7.11 99.48 0.71 1.39 16 24 S 0.13 0.90 20.52 -56.49 -1.16 -0.26 16 25 N -0.49 -4.64 10.55 -178.32 -1.88 -6.52 16 26 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 27 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.20 7.79 -2.39 -0.02 -0.21 16 32 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 33 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.06 -0.10 7.79 -2.39 -0.02 -0.11 16 35 H 0.07 -0.10 7.48 -2.39 -0.02 -0.11 16 36 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 37 H 0.07 -0.05 7.79 -2.39 -0.02 -0.06 16 38 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 39 H 0.08 -0.20 7.79 -2.39 -0.02 -0.21 16 40 H 0.07 -0.11 7.48 -2.39 -0.02 -0.13 16 41 H 0.09 0.00 7.21 -2.39 -0.02 -0.01 16 42 H 0.09 -0.02 7.22 -2.39 -0.02 -0.03 16 43 H 0.20 0.05 7.50 -2.91 -0.02 0.03 16 44 H 0.17 -0.41 7.91 -2.91 -0.02 -0.43 16 45 H 0.17 -0.57 8.06 -2.91 -0.02 -0.59 16 46 H 0.12 -0.92 7.96 -2.39 -0.02 -0.94 16 47 H 0.40 -4.61 8.74 -74.06 -0.65 -5.26 16 Total: 0.00 -13.50 409.08 2.68 -10.82 By element: Atomic # 1 Polarization: -8.74 SS G_CDS: 1.07 Total: -7.67 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.59 Total: 8.03 kcal Atomic # 7 Polarization: -4.64 SS G_CDS: -1.88 Total: -6.52 kcal Atomic # 8 Polarization: 0.92 SS G_CDS: -3.02 Total: -2.09 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.38 Total: -1.39 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.46 Total: -1.17 kcal Total: -13.50 2.68 -10.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175798_12621894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.047 kcal (2) G-P(sol) polarization free energy of solvation -13.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds