Wall clock time and date at job start Mon Mar 8 2021 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47409 * 2 1 4 4 C 1.53003 * 109.47029 * 240.00283 * 2 1 3 5 5 Si 1.86297 * 109.47425 * 120.00398 * 2 1 3 6 6 C 1.86300 * 109.46699 * 299.99775 * 5 2 1 7 7 C 1.86297 * 109.47158 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47254 * 59.99471 * 5 2 1 9 9 C 1.42901 * 113.99979 * 180.02562 * 8 5 2 10 10 C 1.50698 * 109.47006 * 180.02562 * 9 8 5 11 11 C 1.33035 * 122.54567 * 0.21819 * 10 9 8 12 12 S 1.75803 * 109.96760 * 180.23900 * 11 10 9 13 13 C 1.75845 * 91.17469 * 359.75036 * 12 11 10 14 14 C 1.34709 * 109.53713 * 359.97438 * 13 12 11 15 15 C 1.47974 * 122.79484 * 179.97438 * 14 13 12 16 16 C 1.34713 * 125.26859 * 310.03007 * 15 14 13 17 17 C 1.38144 * 114.67907 * 179.97438 * 16 15 14 18 18 C 1.33476 * 115.05665 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.11034 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47079 * 65.00591 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 185.00086 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 S 1.75856 * 109.77818 * 0.24581 * 18 17 16 26 26 H 1.09001 * 109.46630 * 299.99832 * 1 2 3 27 27 H 1.09000 * 109.47277 * 59.99340 * 1 2 3 28 28 H 1.08997 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47594 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46759 * 300.00505 * 3 2 1 31 31 H 1.09004 * 109.46975 * 59.99684 * 3 2 1 32 32 H 1.09000 * 109.47205 * 299.99980 * 4 2 1 33 33 H 1.09006 * 109.47169 * 59.99476 * 4 2 1 34 34 H 1.08994 * 109.47532 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.46944 * 180.02562 * 6 5 2 36 36 H 1.09000 * 109.47460 * 299.99846 * 6 5 2 37 37 H 1.08999 * 109.47376 * 60.00422 * 6 5 2 38 38 H 1.08992 * 109.47463 * 299.99935 * 7 5 2 39 39 H 1.09000 * 109.47107 * 60.00089 * 7 5 2 40 40 H 1.09006 * 109.47306 * 179.97438 * 7 5 2 41 41 H 1.08996 * 109.47098 * 60.00382 * 9 8 5 42 42 H 1.09002 * 109.46859 * 300.00603 * 9 8 5 43 43 H 1.07997 * 125.01260 * 359.97438 * 11 10 9 44 44 H 1.07999 * 125.22915 * 179.97438 * 13 12 11 45 45 H 1.07998 * 122.65964 * 0.02562 * 16 15 14 46 46 H 1.08004 * 122.47210 * 180.02562 * 17 16 15 47 47 H 1.09001 * 109.47380 * 304.99988 * 19 18 17 48 48 H 0.96696 * 114.00435 * 59.99627 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0286 -3.1814 2.6518 10 6 1.4722 -4.5781 2.5485 11 6 0.7145 -4.9730 1.5288 12 16 0.2438 -6.6529 1.7458 13 6 1.1349 -6.7448 3.2590 14 6 1.7167 -5.5565 3.5120 15 6 2.5406 -5.3076 4.7157 16 6 2.1767 -5.5953 5.9805 17 6 3.1170 -5.2708 6.9392 18 6 4.2395 -4.7239 6.4677 19 6 5.4098 -4.2848 7.3096 20 8 6.0005 -5.4253 7.9359 21 14 6.6736 -3.4466 6.2273 22 1 6.0597 -2.2614 5.5763 23 1 7.1416 -4.3963 5.1860 24 1 7.8270 -3.0144 7.0568 25 16 4.1445 -4.5857 4.7171 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7217 -1.2492 35 1 1.8938 -0.5137 3.9322 36 1 1.8934 1.0276 3.0422 37 1 0.4401 -0.0001 3.0423 38 1 4.3770 -1.3929 0.6306 39 1 4.3777 0.1486 1.5204 40 1 4.3775 -1.3924 2.4108 41 1 1.6638 -2.7114 3.5651 42 1 3.1175 -3.2252 2.6757 43 1 0.4271 -4.3519 0.6934 44 1 1.2049 -7.6194 3.8887 45 1 1.2257 -6.0447 6.2254 46 1 2.9560 -5.4474 7.9924 47 1 5.0663 -3.5876 8.0738 48 1 6.3293 -6.0891 7.3144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12175798_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:24 Heat of formation + Delta-G solvation = -71.166248 kcal Electronic energy + Delta-G solvation = -27204.081240 eV Core-core repulsion = 23600.336592 eV Total energy + Delta-G solvation = -3603.744649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.101 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21328 -39.08551 -37.68173 -36.91865 -36.84836 -32.17762 -30.39342 -29.50768 -29.12806 -28.27377 -27.89901 -27.42144 -26.43814 -24.35176 -23.23328 -20.71469 -20.44743 -19.73624 -19.07349 -17.84352 -17.60693 -17.29722 -16.57929 -16.45087 -16.24347 -16.12379 -15.88327 -15.35628 -14.91623 -14.81380 -14.62974 -14.34760 -14.20088 -13.99798 -13.81225 -13.72173 -13.63613 -13.44185 -13.41387 -13.26610 -13.17106 -13.02691 -12.97166 -12.95349 -12.53774 -12.45047 -12.39393 -12.19109 -12.04341 -11.90810 -11.72634 -11.66674 -11.52593 -11.37318 -10.60961 -10.45436 -10.12903 -10.11831 -9.54663 -9.50201 -9.04650 -0.39853 0.07534 0.40074 0.67752 0.73626 1.01336 1.07564 1.31742 1.35999 1.42885 1.53826 1.69138 1.83215 1.93592 2.00742 2.38217 3.34554 3.64970 3.74696 3.90454 4.07299 4.07655 4.11287 4.26581 4.34277 4.41357 4.42600 4.50233 4.55894 4.59344 4.64916 4.67664 4.70188 4.70391 4.77556 4.80351 4.81508 4.95735 5.02219 5.06132 5.06654 5.13042 5.17650 5.19886 5.30482 5.35393 5.38007 5.41732 5.44434 5.50435 5.56722 5.62956 6.42100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.282 2.718 6 C -0.511 4.511 7 C -0.513 4.513 8 O -0.622 6.622 9 C 0.147 3.853 10 C -0.106 4.106 11 C -0.176 4.176 12 S 0.120 5.880 13 C -0.191 4.191 14 C -0.039 4.039 15 C -0.111 4.111 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.222 4.222 19 C -0.037 4.037 20 O -0.533 6.533 21 Si 0.887 3.113 22 H -0.233 1.233 23 H -0.233 1.233 24 H -0.226 1.226 25 S 0.095 5.905 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.179 0.821 44 H 0.170 0.830 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.127 0.873 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 0.128 0.072 0.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.414 2.586 6 C -0.613 4.613 7 C -0.615 4.615 8 O -0.581 6.581 9 C 0.069 3.931 10 C -0.118 4.118 11 C -0.311 4.311 12 S 0.387 5.613 13 C -0.329 4.329 14 C -0.053 4.053 15 C -0.231 4.231 16 C -0.154 4.154 17 C -0.126 4.126 18 C -0.340 4.340 19 C -0.150 4.150 20 O -0.338 6.338 21 Si 0.707 3.293 22 H -0.156 1.156 23 H -0.156 1.156 24 H -0.149 1.149 25 S 0.361 5.639 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.196 0.804 44 H 0.188 0.812 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.145 0.855 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.422 0.196 -2.051 2.104 hybrid contribution -0.161 0.352 1.763 1.805 sum 0.261 0.549 -0.288 0.672 Atomic orbital electron populations 1.21513 0.93767 1.01992 1.01850 1.25745 1.00690 1.02630 1.12520 1.21559 1.00808 0.94859 1.02199 1.21515 1.00657 1.00194 0.96761 0.76795 0.63213 0.53318 0.65251 1.27023 1.07077 1.09512 1.17710 1.27036 1.24944 1.04869 1.04618 1.85286 1.79356 1.46048 1.47375 1.20535 0.97387 0.87968 0.87220 1.18706 1.02092 0.95916 0.95120 1.25356 1.04079 0.97875 1.03813 1.84463 1.50344 1.08873 1.17647 1.25777 1.04243 1.01237 1.01687 1.16723 1.00975 0.93175 0.94465 1.22534 0.97413 1.07565 0.95547 1.20426 1.01394 1.03019 0.90573 1.20021 0.91997 0.99316 1.01286 1.24931 1.02133 1.10697 0.96190 1.24309 0.95932 0.93394 1.01368 1.86536 1.78961 1.31925 1.36378 0.86378 0.80880 0.82151 0.79930 1.15551 1.15569 1.14868 1.84361 1.14167 1.61448 1.03883 0.92669 0.92740 0.92195 0.92488 0.92438 0.92481 0.92203 0.92739 0.92670 0.91381 0.90610 0.90770 0.90735 0.90564 0.91375 0.91117 0.91518 0.80399 0.81243 0.83737 0.83526 0.85548 0.77456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.02 7.85 37.16 0.29 0.31 16 2 C -0.37 0.16 0.53 -90.62 -0.05 0.11 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.13 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.28 -1.00 8.45 -169.99 -1.44 -2.44 16 6 C -0.51 0.20 8.50 101.05 0.86 1.06 16 7 C -0.51 0.19 8.50 101.05 0.86 1.05 16 8 O -0.62 -0.32 7.42 -35.23 -0.26 -0.59 16 9 C 0.15 0.12 4.57 36.00 0.16 0.28 16 10 C -0.11 -0.17 5.82 -105.97 -0.62 -0.79 16 11 C -0.18 -0.20 10.41 28.93 0.30 0.10 16 12 S 0.12 0.04 23.32 -107.50 -2.51 -2.47 16 13 C -0.19 -0.09 10.98 29.48 0.32 0.23 16 14 C -0.04 -0.05 5.66 -106.70 -0.60 -0.66 16 15 C -0.11 -0.12 5.65 -36.84 -0.21 -0.33 16 16 C -0.12 -0.03 10.03 -40.86 -0.41 -0.44 16 17 C -0.10 -0.01 10.03 -41.28 -0.41 -0.42 16 18 C -0.22 -0.04 5.70 -35.97 -0.20 -0.25 16 19 C -0.04 0.03 2.96 36.01 0.11 0.13 16 20 O -0.53 0.06 12.88 -35.23 -0.45 -0.39 16 21 Si 0.89 -0.38 26.25 -169.99 -4.46 -4.84 16 22 H -0.23 0.01 7.11 56.52 0.40 0.41 16 23 H -0.23 0.02 7.11 56.52 0.40 0.42 16 24 H -0.23 -0.08 7.11 56.52 0.40 0.32 16 25 S 0.09 0.08 18.76 -107.50 -2.02 -1.94 16 26 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 -0.01 7.96 -51.93 -0.41 -0.42 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 33 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.03 7.48 -51.93 -0.39 -0.42 16 36 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 37 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 38 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 39 H 0.08 -0.07 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.03 7.48 -51.93 -0.39 -0.42 16 41 H 0.07 0.00 7.21 -51.93 -0.37 -0.37 16 42 H 0.07 0.01 5.91 -51.93 -0.31 -0.30 16 43 H 0.18 0.06 7.48 -52.49 -0.39 -0.34 16 44 H 0.17 -0.21 8.06 -52.49 -0.42 -0.63 16 45 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 46 H 0.15 -0.14 8.06 -52.48 -0.42 -0.57 16 47 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 48 H 0.38 -1.17 8.70 45.56 0.40 -0.77 16 LS Contribution 410.36 15.07 6.18 6.18 Total: 0.00 -3.76 410.36 -11.24 -15.00 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: -7.26 Total: -9.61 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.98 Total: 1.09 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -0.72 Total: -0.97 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.90 Total: -7.28 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -4.52 Total: -4.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -3.76 -11.24 -15.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175798_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.169 kcal (2) G-P(sol) polarization free energy of solvation -3.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds