Wall clock time and date at job start Mon Mar 8 2021 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34734 * 125.66442 * 300.00106 * 4 2 1 6 6 C 1.40936 * 107.03156 * 180.02562 * 5 4 2 7 7 C 1.35947 * 106.74077 * 359.97438 * 6 5 4 8 8 C 1.47788 * 125.93234 * 179.97438 * 7 6 5 9 9 C 1.39596 * 120.14524 * 359.73251 * 8 7 6 10 10 C 1.37954 * 119.84577 * 179.69900 * 9 8 7 11 11 C 1.38355 * 120.15107 * 0.59299 * 10 9 8 12 12 C 1.50709 * 119.85325 * 179.70104 * 11 10 9 13 13 H 1.08999 * 112.84672 * 168.78823 * 12 11 10 14 14 C 1.53784 * 113.61055 * 299.98159 * 12 11 10 15 15 C 1.53783 * 87.07941 * 139.98224 * 14 12 11 16 16 H 1.08997 * 113.61455 * 89.11118 * 15 14 12 17 17 O 1.42899 * 113.61265 * 220.01727 * 15 14 12 18 18 C 1.53780 * 113.61231 * 37.47858 * 12 11 10 19 19 C 1.38364 * 120.29731 * 359.68292 * 11 10 9 20 20 C 1.37957 * 120.14231 * 0.02562 * 19 11 10 21 21 O 1.34311 * 125.66536 * 119.69516 * 4 2 1 22 22 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 23 23 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 24 24 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 25 25 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 26 26 H 1.07997 * 126.48786 * 0.02562 * 5 4 2 27 27 H 1.07999 * 126.62803 * 180.02562 * 6 5 4 28 28 H 1.07992 * 120.07133 * 359.96905 * 9 8 7 29 29 H 1.08004 * 119.92281 * 180.29950 * 10 9 8 30 30 H 1.09005 * 113.61003 * 254.52975 * 14 12 11 31 31 H 1.08993 * 113.61828 * 25.34625 * 14 12 11 32 32 H 0.96696 * 114.00127 * 179.97438 * 17 15 14 33 33 H 1.09005 * 113.61470 * 334.56202 * 18 12 11 34 34 H 1.08992 * 113.61609 * 105.47308 * 18 12 11 35 35 H 1.07993 * 119.92636 * 180.02562 * 19 11 10 36 36 H 1.07999 * 120.06857 * 180.02562 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6771 -1.9930 -1.5558 6 6 2.3351 -2.2475 -2.7758 7 6 2.9604 -1.0940 -3.1316 8 6 3.7776 -0.8894 -4.3459 9 6 3.9678 -1.9378 -5.2477 10 6 4.7267 -1.7382 -6.3824 11 6 5.3087 -0.5060 -6.6213 12 6 6.1420 -0.2973 -7.8596 13 1 6.3818 0.7511 -8.0366 14 6 7.3606 -1.2313 -7.9466 15 6 7.0545 -1.3618 -9.4480 16 1 7.5436 -0.6045 -10.0607 17 8 7.2303 -2.6862 -9.9550 18 6 5.5952 -1.0241 -9.0996 19 6 5.1289 0.5358 -5.7286 20 6 4.3675 0.3514 -4.5930 21 8 2.7020 -0.1687 -2.1877 22 1 -0.3934 0.4417 -0.7651 23 1 1.7923 -0.5139 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5615 2.4679 1.2085 26 1 1.0818 -2.6935 -0.9889 27 1 2.3406 -3.1787 -3.3229 28 1 3.5183 -2.9016 -5.0598 29 1 4.8706 -2.5471 -7.0835 30 1 8.3075 -0.7342 -7.7356 31 1 7.2382 -2.1616 -7.3922 32 1 7.0389 -2.7747 -10.8987 33 1 4.9896 -1.8986 -8.8616 34 1 5.1169 -0.3599 -9.8195 35 1 5.5857 1.4952 -5.9211 36 1 4.2276 1.1654 -3.8972 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12175800_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:19 Heat of formation + Delta-G solvation = -11.744943 kcal Electronic energy + Delta-G solvation = -19915.072579 eV Core-core repulsion = 16719.275145 eV Total energy + Delta-G solvation = -3195.797435 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.60483 -41.17522 -39.28458 -38.09509 -36.15096 -34.15949 -33.06461 -31.95368 -30.46528 -27.14516 -26.78396 -25.08939 -24.15043 -22.85208 -22.23245 -21.25068 -20.28821 -19.16069 -18.71213 -17.91338 -17.40677 -16.82893 -16.59152 -16.47594 -15.81321 -15.75713 -15.37144 -14.87290 -14.54948 -14.25980 -14.11605 -13.93743 -13.83679 -13.68743 -13.51628 -13.33586 -12.92127 -12.72290 -12.31711 -12.23479 -12.02920 -11.75361 -11.44129 -10.97336 -10.81403 -10.77489 -10.30923 -9.96524 -8.78250 -4.97980 -0.28512 0.40316 0.94188 1.16439 1.51828 1.68777 1.76641 1.94287 2.77791 3.15312 3.17640 3.42617 3.48593 3.56673 3.77871 3.83025 3.87606 3.95744 4.00958 4.03398 4.09294 4.32390 4.38628 4.39961 4.53820 4.70480 4.72615 4.73074 4.83290 4.89350 4.91117 4.98254 5.01808 5.08314 5.25031 5.36141 5.41805 5.54792 5.63231 5.90423 6.06716 6.27763 6.65563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.033 4.033 3 Si 0.700 3.300 4 C -0.054 4.054 5 C -0.170 4.170 6 C -0.194 4.194 7 C 0.039 3.961 8 C -0.024 4.024 9 C -0.092 4.092 10 C -0.112 4.112 11 C -0.060 4.060 12 C -0.075 4.075 13 H 0.103 0.897 14 C -0.119 4.119 15 C 0.075 3.925 16 H 0.084 0.916 17 O -0.560 6.560 18 C -0.163 4.163 19 C -0.112 4.112 20 C -0.098 4.098 21 O -0.164 6.164 22 H 0.380 0.620 23 H 0.136 0.864 24 H -0.256 1.256 25 H -0.249 1.249 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.379 0.621 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 0.938 -2.466 3.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.143 4.143 3 Si 0.599 3.401 4 C -0.104 4.104 5 C -0.189 4.189 6 C -0.213 4.213 7 C -0.011 4.011 8 C -0.024 4.024 9 C -0.110 4.110 10 C -0.129 4.129 11 C -0.060 4.060 12 C -0.093 4.093 13 H 0.121 0.879 14 C -0.157 4.157 15 C 0.016 3.984 16 H 0.101 0.899 17 O -0.365 6.365 18 C -0.201 4.201 19 C -0.130 4.130 20 C -0.116 4.116 21 O -0.062 6.062 22 H 0.228 0.772 23 H 0.154 0.846 24 H -0.181 1.181 25 H -0.173 1.173 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.227 0.773 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.218 1.656 -1.291 3.054 hybrid contribution -1.346 -0.312 -1.123 1.781 sum 0.872 1.344 -2.413 2.897 Atomic orbital electron populations 1.86656 1.16722 1.80175 1.49204 1.24304 0.83917 1.12097 0.93973 0.94451 0.91437 0.73359 0.80891 1.22825 0.99747 0.94510 0.93345 1.21547 1.03587 0.95932 0.97869 1.21846 1.02074 0.99002 0.98369 1.20470 1.01918 0.87818 0.90849 1.17742 0.98266 0.95085 0.91300 1.21032 0.98502 0.98036 0.93417 1.20933 0.97576 0.97236 0.97186 1.19770 0.97041 0.93607 0.95585 1.21339 0.95696 0.99931 0.92378 0.87914 1.23174 0.97822 1.00019 0.94654 1.23359 0.95212 0.84707 0.95160 0.89861 1.86535 1.91710 1.28795 1.29494 1.23844 0.97898 1.01086 0.97269 1.21000 0.98956 0.99018 0.94005 1.21267 0.96490 0.96310 0.97520 1.83928 1.55334 1.38985 1.27934 0.77155 0.84623 1.18051 1.17285 0.82922 0.82968 0.85297 0.85142 0.90415 0.88795 0.77305 0.88725 0.90867 0.85388 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.58 12.87 -35.23 -0.45 -1.04 16 2 C -0.03 0.00 2.98 36.01 0.11 0.10 16 3 Si 0.70 -0.25 32.10 -169.99 -5.46 -5.71 16 4 C -0.05 -0.09 6.22 -35.55 -0.22 -0.31 16 5 C -0.17 -0.31 10.77 -39.80 -0.43 -0.74 16 6 C -0.19 -0.35 10.26 -39.38 -0.40 -0.75 16 7 C 0.04 0.10 7.03 -36.50 -0.26 -0.16 16 8 C -0.02 -0.04 5.87 -104.98 -0.62 -0.66 16 9 C -0.09 -0.07 9.56 -39.18 -0.37 -0.44 16 10 C -0.11 -0.03 8.58 -39.64 -0.34 -0.37 16 11 C -0.06 -0.01 5.30 -104.53 -0.55 -0.56 16 12 C -0.08 0.09 3.98 -90.95 -0.36 -0.27 16 13 H 0.10 -0.23 8.09 -51.93 -0.42 -0.65 16 14 C -0.12 0.07 7.38 -25.92 -0.19 -0.12 16 15 C 0.07 -0.08 5.21 -25.91 -0.14 -0.21 16 16 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 17 O -0.56 -0.15 13.67 -35.23 -0.48 -0.63 16 18 C -0.16 0.22 7.28 -25.92 -0.19 0.03 16 19 C -0.11 -0.02 9.69 -39.64 -0.38 -0.41 16 20 C -0.10 -0.11 9.72 -39.18 -0.38 -0.49 16 21 O -0.16 -0.42 8.80 4.64 0.04 -0.37 16 22 H 0.38 -0.59 8.70 45.56 0.40 -0.19 16 23 H 0.14 -0.18 7.96 -51.93 -0.41 -0.60 16 24 H -0.26 -0.58 7.11 56.52 0.40 -0.18 16 25 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 26 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 27 H 0.15 -0.02 7.26 -52.49 -0.38 -0.40 16 28 H 0.13 -0.11 6.99 -52.49 -0.37 -0.48 16 29 H 0.13 -0.10 6.64 -52.48 -0.35 -0.45 16 30 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.09 0.04 7.72 -51.93 -0.40 -0.36 16 32 H 0.38 -1.41 9.12 45.56 0.42 -0.99 16 33 H 0.09 -0.08 6.30 -51.93 -0.33 -0.40 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.13 -0.21 8.05 -52.49 -0.42 -0.64 16 36 H 0.13 0.03 7.91 -52.49 -0.42 -0.39 16 LS Contribution 308.71 15.07 4.65 4.65 Total: 0.00 -6.30 308.71 -10.00 -16.30 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -3.57 Total: -7.84 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -4.73 Total: -5.37 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -0.89 Total: -2.04 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: -5.46 Total: -5.71 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -6.30 -10.00 -16.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.558 kcal (2) G-P(sol) polarization free energy of solvation -6.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds