Wall clock time and date at job start Mon Mar 8 2021 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34734 * 125.66442 * 300.00106 * 4 2 1 6 6 C 1.40936 * 107.03156 * 180.02562 * 5 4 2 7 7 C 1.35947 * 106.74077 * 359.97438 * 6 5 4 8 8 C 1.47788 * 125.93234 * 179.97438 * 7 6 5 9 9 C 1.39596 * 120.14524 * 359.73251 * 8 7 6 10 10 C 1.37954 * 119.84577 * 179.69900 * 9 8 7 11 11 C 1.38355 * 120.15107 * 0.59299 * 10 9 8 12 12 C 1.50709 * 119.85325 * 179.70104 * 11 10 9 13 13 H 1.08999 * 112.84672 * 168.78823 * 12 11 10 14 14 C 1.53784 * 113.61055 * 299.98159 * 12 11 10 15 15 C 1.53783 * 87.07941 * 139.98224 * 14 12 11 16 16 H 1.08997 * 113.61455 * 89.11118 * 15 14 12 17 17 O 1.42899 * 113.61265 * 220.01727 * 15 14 12 18 18 C 1.53780 * 113.61231 * 37.47858 * 12 11 10 19 19 C 1.38364 * 120.29731 * 359.68292 * 11 10 9 20 20 C 1.37957 * 120.14231 * 0.02562 * 19 11 10 21 21 O 1.34311 * 125.66536 * 119.69516 * 4 2 1 22 22 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 23 23 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 24 24 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 25 25 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 26 26 H 1.07997 * 126.48786 * 0.02562 * 5 4 2 27 27 H 1.07999 * 126.62803 * 180.02562 * 6 5 4 28 28 H 1.07992 * 120.07133 * 359.96905 * 9 8 7 29 29 H 1.08004 * 119.92281 * 180.29950 * 10 9 8 30 30 H 1.09005 * 113.61003 * 254.52975 * 14 12 11 31 31 H 1.08993 * 113.61828 * 25.34625 * 14 12 11 32 32 H 0.96696 * 114.00127 * 179.97438 * 17 15 14 33 33 H 1.09005 * 113.61470 * 334.56202 * 18 12 11 34 34 H 1.08992 * 113.61609 * 105.47308 * 18 12 11 35 35 H 1.07993 * 119.92636 * 180.02562 * 19 11 10 36 36 H 1.07999 * 120.06857 * 180.02562 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6771 -1.9930 -1.5558 6 6 2.3351 -2.2475 -2.7758 7 6 2.9604 -1.0940 -3.1316 8 6 3.7776 -0.8894 -4.3459 9 6 3.9678 -1.9378 -5.2477 10 6 4.7267 -1.7382 -6.3824 11 6 5.3087 -0.5060 -6.6213 12 6 6.1420 -0.2973 -7.8596 13 1 6.3818 0.7511 -8.0366 14 6 7.3606 -1.2313 -7.9466 15 6 7.0545 -1.3618 -9.4480 16 1 7.5436 -0.6045 -10.0607 17 8 7.2303 -2.6862 -9.9550 18 6 5.5952 -1.0241 -9.0996 19 6 5.1289 0.5358 -5.7286 20 6 4.3675 0.3514 -4.5930 21 8 2.7020 -0.1687 -2.1877 22 1 -0.3934 0.4417 -0.7651 23 1 1.7923 -0.5139 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5615 2.4679 1.2085 26 1 1.0818 -2.6935 -0.9889 27 1 2.3406 -3.1787 -3.3229 28 1 3.5183 -2.9016 -5.0598 29 1 4.8706 -2.5471 -7.0835 30 1 8.3075 -0.7342 -7.7356 31 1 7.2382 -2.1616 -7.3922 32 1 7.0389 -2.7747 -10.8987 33 1 4.9896 -1.8986 -8.8616 34 1 5.1169 -0.3599 -9.8195 35 1 5.5857 1.4952 -5.9211 36 1 4.2276 1.1654 -3.8972 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12175800_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:19 Heat of formation + Delta-G solvation = -7.998826 kcal Electronic energy + Delta-G solvation = -19914.910136 eV Core-core repulsion = 16719.275145 eV Total energy + Delta-G solvation = -3195.634991 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.71187 -41.11632 -39.24782 -38.14492 -36.10091 -34.25554 -33.09982 -31.95926 -30.50468 -27.15281 -26.68105 -25.07659 -24.17632 -22.85576 -22.29583 -21.31888 -20.20856 -19.20555 -18.66774 -17.94928 -17.51224 -16.84270 -16.53667 -16.45074 -15.83737 -15.75214 -15.35895 -14.83773 -14.56463 -14.35144 -14.13269 -13.95468 -13.91095 -13.72067 -13.48518 -13.31565 -12.96311 -12.65645 -12.27881 -12.22537 -12.14824 -11.68890 -11.33559 -11.07449 -10.82994 -10.70806 -10.35499 -9.97923 -8.85077 -4.98100 -0.34242 0.38993 0.86385 1.14818 1.45925 1.59517 1.70822 1.88335 2.75384 3.19313 3.28637 3.40099 3.58469 3.65478 3.77839 3.93119 3.94047 3.98395 3.99706 4.07897 4.11956 4.36222 4.41531 4.43488 4.60938 4.69553 4.77432 4.80488 4.82212 4.84828 4.98601 5.00338 5.02799 5.15118 5.29274 5.35595 5.39980 5.48705 5.66465 5.90920 5.98763 6.31288 6.91029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.036 4.036 3 Si 0.771 3.229 4 C -0.059 4.059 5 C -0.181 4.181 6 C -0.200 4.200 7 C 0.025 3.975 8 C -0.041 4.041 9 C -0.098 4.098 10 C -0.117 4.117 11 C -0.064 4.064 12 C -0.070 4.070 13 H 0.118 0.882 14 C -0.125 4.125 15 C 0.074 3.926 16 H 0.100 0.900 17 O -0.582 6.582 18 C -0.161 4.161 19 C -0.116 4.116 20 C -0.109 4.109 21 O -0.174 6.174 22 H 0.389 0.611 23 H 0.153 0.847 24 H -0.294 1.294 25 H -0.279 1.279 26 H 0.162 0.838 27 H 0.167 0.833 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.394 0.606 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 1.025 -2.925 3.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.145 4.145 3 Si 0.675 3.325 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.219 4.219 7 C -0.025 4.025 8 C -0.041 4.041 9 C -0.116 4.116 10 C -0.135 4.135 11 C -0.064 4.064 12 C -0.089 4.089 13 H 0.136 0.864 14 C -0.163 4.163 15 C 0.016 3.984 16 H 0.117 0.883 17 O -0.391 6.391 18 C -0.198 4.198 19 C -0.134 4.134 20 C -0.127 4.127 21 O -0.071 6.071 22 H 0.239 0.761 23 H 0.171 0.829 24 H -0.221 1.221 25 H -0.205 1.205 26 H 0.180 0.820 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.604 1.725 -1.763 3.587 hybrid contribution -1.481 -0.332 -1.016 1.827 sum 1.123 1.394 -2.779 3.306 Atomic orbital electron populations 1.86628 1.17242 1.80476 1.49953 1.24514 0.83525 1.12465 0.94011 0.93551 0.90408 0.71522 0.77055 1.23117 0.99496 0.94710 0.93507 1.21767 1.03882 0.96285 0.98119 1.22105 1.01795 0.99464 0.98531 1.20728 1.02443 0.88125 0.91191 1.17905 0.98901 0.95773 0.91537 1.21214 0.98595 0.98381 0.93379 1.21093 0.97493 0.97713 0.97200 1.19990 0.96864 0.93478 0.96037 1.21377 0.95085 1.00644 0.91754 0.86438 1.23186 0.98345 0.99595 0.95128 1.23456 0.95392 0.84619 0.94972 0.88258 1.86491 1.91871 1.29653 1.31062 1.23802 0.97773 1.00899 0.97336 1.21237 0.98656 0.99895 0.93564 1.21427 0.96852 0.96333 0.98121 1.83913 1.55656 1.39351 1.28220 0.76073 0.82920 1.22074 1.20493 0.81990 0.81514 0.84179 0.84456 0.89910 0.90275 0.75560 0.89541 0.90004 0.83554 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.23 12.87 -148.98 -1.92 -3.14 16 2 C -0.04 -0.01 2.98 71.24 0.21 0.21 16 3 Si 0.77 -0.17 32.10 68.60 2.20 2.03 16 4 C -0.06 -0.22 6.22 24.88 0.15 -0.06 16 5 C -0.18 -0.71 10.77 22.13 0.24 -0.47 16 6 C -0.20 -0.82 10.26 22.40 0.23 -0.59 16 7 C 0.02 0.15 7.03 24.27 0.17 0.32 16 8 C -0.04 -0.19 5.87 -20.10 -0.12 -0.30 16 9 C -0.10 -0.21 9.56 22.53 0.22 0.01 16 10 C -0.12 -0.12 8.58 22.23 0.19 0.07 16 11 C -0.06 -0.01 5.30 -19.80 -0.10 -0.12 16 12 C -0.07 0.21 3.98 -11.01 -0.04 0.17 16 13 H 0.12 -0.70 8.09 -2.39 -0.02 -0.72 16 14 C -0.13 0.18 7.38 31.12 0.23 0.41 16 15 C 0.07 -0.20 5.21 31.12 0.16 -0.04 16 16 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 17 O -0.58 -0.19 13.67 -148.98 -2.04 -2.23 16 18 C -0.16 0.52 7.28 31.12 0.23 0.75 16 19 C -0.12 -0.04 9.69 22.23 0.22 0.17 16 20 C -0.11 -0.32 9.72 22.53 0.22 -0.11 16 21 O -0.17 -1.02 8.80 -6.33 -0.06 -1.07 16 22 H 0.39 -1.04 8.70 -74.06 -0.64 -1.68 16 23 H 0.15 -0.52 7.96 -2.38 -0.02 -0.54 16 24 H -0.29 -1.76 7.11 99.48 0.71 -1.05 16 25 H -0.28 -1.31 7.11 99.48 0.71 -0.60 16 26 H 0.16 0.21 8.06 -2.91 -0.02 0.18 16 27 H 0.17 -0.02 7.26 -2.91 -0.02 -0.04 16 28 H 0.14 -0.17 6.99 -2.91 -0.02 -0.19 16 29 H 0.14 -0.13 6.64 -2.91 -0.02 -0.15 16 30 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 31 H 0.08 0.13 7.72 -2.39 -0.02 0.11 16 32 H 0.39 -3.05 9.12 -74.06 -0.68 -3.73 16 33 H 0.09 -0.13 6.30 -2.38 -0.02 -0.15 16 34 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.15 -0.60 8.05 -2.91 -0.02 -0.62 16 36 H 0.13 0.18 7.91 -2.91 -0.02 0.16 16 Total: 0.00 -14.53 308.71 0.22 -14.30 By element: Atomic # 1 Polarization: -10.14 SS G_CDS: -0.17 Total: -10.31 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 2.20 Total: 0.42 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -4.01 Total: -6.45 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: 2.20 Total: 2.03 kcal Total: -14.53 0.22 -14.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.306 kcal (2) G-P(sol) polarization free energy of solvation -14.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds