Wall clock time and date at job start Mon Mar 8 2021 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47490 * 2 1 4 4 C 1.52999 * 109.47203 * 239.99430 * 2 1 3 5 5 O 1.45209 * 109.46854 * 119.99790 * 2 1 3 6 6 C 1.34634 * 116.99600 * 59.99786 * 5 2 1 7 7 O 1.21513 * 120.00426 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99961 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00610 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.84569 * 23.80716 * 9 8 6 11 11 C 1.53787 * 113.61922 * 154.99871 * 9 8 6 12 12 C 1.53783 * 87.07868 * 89.11831 * 11 9 8 13 13 H 1.08998 * 113.61170 * 270.80113 * 12 11 9 14 14 C 1.50695 * 113.61311 * 139.98468 * 12 11 9 15 15 C 1.37933 * 119.92759 * 121.83165 * 14 12 11 16 16 C 1.39614 * 119.84936 * 180.25212 * 15 14 12 17 17 C 1.47788 * 120.14462 * 179.74307 * 16 15 14 18 18 C 1.35958 * 125.92912 * 179.43949 * 17 16 15 19 19 C 1.40931 * 106.73683 * 180.26373 * 18 17 16 20 20 C 1.34734 * 107.03349 * 359.97438 * 19 18 17 21 21 C 1.50695 * 125.66493 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47430 * 65.00058 * 21 20 19 23 23 Si 1.86295 * 109.47383 * 185.00426 * 21 20 19 24 24 O 1.34301 * 108.67336 * 0.02562 * 20 19 18 25 25 C 1.39574 * 119.70650 * 359.47110 * 16 15 14 26 26 C 1.37972 * 119.85496 * 0.24865 * 25 16 15 27 27 C 1.38339 * 120.14192 * 0.02562 * 26 25 16 28 28 C 1.53779 * 87.17224 * 25.39299 * 12 11 9 29 29 H 1.08994 * 109.47099 * 300.00551 * 1 2 3 30 30 H 1.09005 * 109.46654 * 60.00160 * 1 2 3 31 31 H 1.08993 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47358 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47042 * 299.99603 * 3 2 1 34 34 H 1.09000 * 109.47817 * 59.99804 * 3 2 1 35 35 H 1.09003 * 109.47510 * 300.00713 * 4 2 1 36 36 H 1.09005 * 109.46981 * 60.00610 * 4 2 1 37 37 H 1.08992 * 109.47435 * 180.02562 * 4 2 1 38 38 H 0.97005 * 119.99682 * 359.97438 * 8 6 5 39 39 H 1.09002 * 113.61103 * 334.56960 * 11 9 8 40 40 H 1.08991 * 113.69188 * 203.67907 * 11 9 8 41 41 H 1.07999 * 120.07351 * 359.97438 * 15 14 12 42 42 H 1.08001 * 126.63016 * 0.23063 * 18 17 16 43 43 H 1.07997 * 126.48312 * 179.97438 * 19 18 17 44 44 H 1.09005 * 109.47056 * 305.00375 * 21 20 19 45 45 H 0.96704 * 113.99759 * 59.99672 * 22 21 20 46 46 H 1.48504 * 110.00017 * 58.67931 * 23 21 20 47 47 H 1.48506 * 110.00284 * 180.02562 * 23 21 20 48 48 H 1.08003 * 120.07320 * 180.23496 * 25 16 15 49 49 H 1.08001 * 119.93211 * 179.97438 * 26 25 16 50 50 H 1.07999 * 119.84945 * 179.97438 * 27 26 25 51 51 H 1.09001 * 113.61501 * 89.15695 * 28 12 11 52 52 H 1.09009 * 113.61184 * 220.06011 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5041 8 7 2.0678 -2.6657 2.4167 9 6 1.6736 -4.0668 2.5834 10 1 1.4205 -4.5503 1.6398 11 6 2.6471 -4.8816 3.4514 12 6 1.8072 -4.4457 4.6636 13 1 2.1380 -3.5076 5.1093 14 6 1.6048 -5.5380 5.6819 15 6 2.0192 -5.3503 6.9840 16 6 1.8357 -6.3654 7.9248 17 6 2.2824 -6.1734 9.3205 18 6 2.1532 -7.0743 10.3305 19 6 2.7058 -6.4762 11.4808 20 6 3.1407 -5.2532 11.1196 21 6 3.8057 -4.2530 12.0297 22 8 5.0614 -4.7725 12.4719 23 14 4.0839 -2.6603 11.1043 24 8 2.8831 -5.0735 9.8139 25 6 1.2233 -7.5600 7.5429 26 6 0.8082 -7.7326 6.2384 27 6 0.9983 -6.7249 5.3099 28 6 0.6269 -4.2835 3.6913 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1299 -0.7218 -1.2490 38 1 2.6280 -2.2370 3.0826 39 1 3.6624 -4.4852 3.4583 40 1 2.6127 -5.9539 3.2592 41 1 2.4887 -4.4219 7.2741 42 1 1.7120 -8.0578 10.2643 43 1 2.7687 -6.9152 12.4655 44 1 3.1662 -4.0652 12.8922 45 1 5.6822 -4.9635 11.7555 46 1 2.7887 -2.1262 10.6117 47 1 4.7399 -1.6656 11.9908 48 1 1.0749 -8.3477 8.2667 49 1 0.3346 -8.6566 5.9414 50 1 0.6719 -6.8652 4.2900 51 1 0.0380 -5.1919 3.5640 52 1 0.0137 -3.4048 3.8918 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12175800_14315990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:20 Heat of formation + Delta-G solvation = -38.670602 kcal Electronic energy + Delta-G solvation = -32967.943166 eV Core-core repulsion = 28480.955809 eV Total energy + Delta-G solvation = -4486.987357 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.182 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.70091 -41.99490 -41.03516 -39.37498 -37.99906 -37.80093 -35.40122 -34.50352 -34.01375 -33.06723 -31.88594 -30.33516 -28.37901 -28.31450 -26.75427 -26.51329 -26.41220 -24.09185 -23.53057 -23.16233 -22.01377 -21.35896 -21.14201 -20.06538 -19.35567 -18.83664 -17.99004 -17.58785 -17.49140 -17.20862 -17.02825 -16.67873 -16.46585 -16.08729 -15.82349 -15.72582 -15.46579 -15.29039 -14.80602 -14.60794 -14.43397 -14.36254 -14.24915 -14.02446 -13.95698 -13.70575 -13.54987 -13.37281 -13.33619 -13.07072 -12.93186 -12.88704 -12.87906 -12.75692 -12.50928 -12.41429 -12.32081 -12.24399 -11.78836 -11.72296 -11.40952 -11.24867 -11.11361 -11.07593 -10.67555 -10.46950 -10.18706 -9.70715 -8.88818 -5.05179 -0.28204 0.39660 0.91495 1.12784 1.14307 1.44972 1.62221 1.72075 1.77181 1.87352 2.80452 3.10509 3.28770 3.41637 3.45542 3.64102 3.68696 3.73087 3.78792 3.91875 3.93219 3.93584 3.98333 4.02766 4.15767 4.21738 4.31265 4.37435 4.46371 4.49633 4.59643 4.60314 4.64283 4.72858 4.75364 4.77843 4.78876 4.82164 4.86455 4.86658 4.90040 4.95876 5.02052 5.04351 5.06455 5.10104 5.16370 5.26088 5.30454 5.34791 5.44960 5.48346 5.51517 5.58474 5.69735 5.97148 6.01378 6.37665 6.59310 7.32567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.121 4.121 12 C -0.069 4.069 13 H 0.105 0.895 14 C -0.069 4.069 15 C -0.109 4.109 16 C -0.035 4.035 17 C 0.025 3.975 18 C -0.201 4.201 19 C -0.184 4.184 20 C -0.061 4.061 21 C -0.028 4.028 22 O -0.542 6.542 23 Si 0.778 3.222 24 O -0.172 6.172 25 C -0.107 4.107 26 C -0.115 4.115 27 C -0.110 4.110 28 C -0.142 4.142 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.399 0.601 46 H -0.294 1.294 47 H -0.276 1.276 48 H 0.139 0.861 49 H 0.150 0.850 50 H 0.145 0.855 51 H 0.106 0.894 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -0.626 -1.635 2.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.159 4.159 12 C -0.088 4.088 13 H 0.123 0.877 14 C -0.069 4.069 15 C -0.127 4.127 16 C -0.036 4.036 17 C -0.025 4.025 18 C -0.219 4.219 19 C -0.203 4.203 20 C -0.111 4.111 21 C -0.138 4.138 22 O -0.350 6.350 23 Si 0.682 3.318 24 O -0.070 6.070 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.180 4.180 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.186 0.814 43 H 0.178 0.822 44 H 0.152 0.848 45 H 0.250 0.750 46 H -0.221 1.221 47 H -0.202 1.202 48 H 0.157 0.843 49 H 0.168 0.832 50 H 0.163 0.837 51 H 0.124 0.876 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.551 0.375 -1.726 2.351 hybrid contribution -0.442 -0.399 0.980 1.147 sum 1.109 -0.024 -0.746 1.337 Atomic orbital electron populations 1.22474 0.94095 1.03717 1.03460 1.22348 0.94415 0.92566 0.81527 1.21894 1.02500 0.90910 1.04212 1.22473 1.01673 1.02271 0.97292 1.86312 1.71561 1.23284 1.47298 1.18316 0.78603 0.80770 0.82371 1.90905 1.42107 1.70886 1.44389 1.44391 1.54803 1.12053 1.23067 1.21913 0.96912 0.79101 0.99298 0.88567 1.23414 0.98608 1.01361 0.92541 1.21612 0.97531 0.96980 0.92641 0.87684 1.19702 0.98049 0.95684 0.93460 1.21272 1.00011 0.98635 0.92802 1.17888 1.01663 0.96297 0.87714 1.20778 1.01362 0.85922 0.94409 1.22106 1.06007 1.01996 0.91821 1.21779 1.02675 0.94904 1.00915 1.23155 1.06362 0.99297 0.82284 1.24492 0.86974 1.02964 0.99364 1.86525 1.23671 1.86800 1.37987 0.93300 0.82921 0.72817 0.82764 1.83903 1.61361 1.38275 1.23441 1.21282 0.97758 0.95884 0.97557 1.21348 0.99403 1.00200 0.92327 1.21430 0.97864 0.92617 1.00841 1.23640 0.96482 1.03219 0.94698 0.92060 0.89471 0.91722 0.91116 0.88320 0.91261 0.91712 0.89485 0.91881 0.74650 0.89377 0.87033 0.85344 0.81447 0.82158 0.84819 0.75040 1.22148 1.20229 0.84347 0.83245 0.83711 0.87559 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.35 1.13 -10.80 -0.01 0.34 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 5 O -0.37 -1.93 9.94 -55.43 -0.55 -2.48 16 6 C 0.65 3.99 8.06 129.79 1.05 5.04 16 7 O -0.59 -6.78 11.48 19.80 0.23 -6.55 16 8 N -0.68 0.22 5.26 -567.33 -2.99 -2.77 16 9 C 0.13 -0.31 4.33 45.58 0.20 -0.11 16 10 H 0.10 0.09 7.46 -2.38 -0.02 0.07 16 11 C -0.12 0.77 7.29 31.12 0.23 0.99 16 12 C -0.07 0.34 3.85 -11.02 -0.04 0.30 16 13 H 0.11 -0.61 8.08 -2.39 -0.02 -0.63 16 14 C -0.07 0.14 5.28 -19.90 -0.11 0.03 16 15 C -0.11 -0.12 9.38 22.53 0.21 0.09 16 16 C -0.04 -0.09 5.87 -20.10 -0.12 -0.21 16 17 C 0.02 0.12 7.03 24.27 0.17 0.29 16 18 C -0.20 -0.63 10.26 22.40 0.23 -0.40 16 19 C -0.18 -0.63 10.78 22.13 0.24 -0.40 16 20 C -0.06 -0.19 6.20 24.88 0.15 -0.04 16 21 C -0.03 0.00 2.98 71.23 0.21 0.21 16 22 O -0.54 0.23 12.88 -148.98 -1.92 -1.69 16 23 Si 0.78 -0.67 32.11 68.60 2.20 1.53 16 24 O -0.17 -0.82 8.81 -6.23 -0.05 -0.87 16 25 C -0.11 0.04 9.56 22.53 0.22 0.26 16 26 C -0.12 0.33 10.03 22.23 0.22 0.55 16 27 C -0.11 0.36 8.53 22.33 0.19 0.55 16 28 C -0.14 0.47 7.26 31.18 0.23 0.70 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 36 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.42 -1.92 8.81 -92.70 -0.82 -2.74 16 39 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.11 -0.85 7.63 -2.39 -0.02 -0.87 16 41 H 0.13 0.00 7.90 -2.91 -0.02 -0.02 16 42 H 0.17 -0.19 7.26 -2.91 -0.02 -0.21 16 43 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 44 H 0.13 -0.10 7.96 -2.38 -0.02 -0.12 16 45 H 0.40 -3.22 8.70 -74.05 -0.64 -3.86 16 46 H -0.29 -1.77 7.11 99.48 0.71 -1.06 16 47 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 48 H 0.14 -0.48 6.99 -2.91 -0.02 -0.50 16 49 H 0.15 -1.07 8.06 -2.91 -0.02 -1.10 16 50 H 0.15 -1.05 6.71 -2.91 -0.02 -1.07 16 51 H 0.11 -0.52 6.39 -2.39 -0.02 -0.54 16 52 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 Total: 0.00 -18.49 423.19 1.56 -16.93 By element: Atomic # 1 Polarization: -12.87 SS G_CDS: -0.47 Total: -13.34 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.11 Total: 9.23 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: -2.99 Total: -2.77 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -2.30 Total: -11.59 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.20 Total: 1.53 kcal Total: -18.49 1.56 -16.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_14315990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.737 kcal (2) G-P(sol) polarization free energy of solvation -18.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds