Wall clock time and date at job start Mon Mar 8 2021 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40048 * 126.11886 * 2 1 4 4 C 1.30872 * 108.78774 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.63943 * 180.26344 * 4 3 2 6 6 O 1.42904 * 109.47482 * 179.69385 * 5 4 3 7 7 Si 1.63102 * 114.00078 * 179.97438 * 6 5 4 8 8 C 1.86292 * 109.47318 * 300.00222 * 7 6 5 9 9 C 1.86309 * 109.47019 * 60.00346 * 7 6 5 10 10 C 1.86298 * 109.46906 * 180.02562 * 7 6 5 11 11 C 1.52993 * 109.47132 * 60.00307 * 10 7 6 12 12 C 1.53009 * 109.47018 * 180.02562 * 10 7 6 13 13 C 1.53004 * 109.47334 * 300.00102 * 10 7 6 14 14 C 1.39435 * 108.72259 * 0.02562 * 4 3 2 15 15 C 1.36505 * 126.12308 * 179.97438 * 2 1 3 16 16 C 1.47290 * 126.45592 * 359.97438 * 15 2 1 17 17 C 1.36173 * 125.94435 * 184.97508 * 16 15 2 18 18 C 1.40868 * 106.72196 * 180.02562 * 17 16 15 19 19 C 1.34762 * 107.06597 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.65082 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46902 * 299.99468 * 20 19 18 22 22 Si 1.86301 * 109.47314 * 179.97438 * 20 19 18 23 23 H 1.48495 * 109.47036 * 59.99789 * 22 20 19 24 24 H 1.48503 * 109.47065 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47001 * 299.99719 * 22 20 19 26 26 O 1.34329 * 108.70317 * 359.73307 * 19 18 17 27 27 H 1.08999 * 109.46969 * 270.00102 * 1 2 3 28 28 H 1.08997 * 109.47165 * 30.00097 * 1 2 3 29 29 H 1.08996 * 109.46979 * 149.99952 * 1 2 3 30 30 H 1.09003 * 109.47550 * 299.69460 * 5 4 3 31 31 H 1.09003 * 109.47592 * 59.69286 * 5 4 3 32 32 H 1.09002 * 109.47169 * 59.99985 * 8 7 6 33 33 H 1.09005 * 109.47386 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47183 * 299.99997 * 8 7 6 35 35 H 1.09001 * 109.46826 * 59.99681 * 9 7 6 36 36 H 1.08992 * 109.46858 * 179.97438 * 9 7 6 37 37 H 1.08995 * 109.46833 * 300.00118 * 9 7 6 38 38 H 1.09004 * 109.47525 * 59.99974 * 11 10 7 39 39 H 1.09002 * 109.47112 * 179.97438 * 11 10 7 40 40 H 1.08997 * 109.47497 * 299.99640 * 11 10 7 41 41 H 1.09000 * 109.46750 * 59.99812 * 12 10 7 42 42 H 1.08994 * 109.46785 * 180.02562 * 12 10 7 43 43 H 1.08995 * 109.46592 * 300.00103 * 12 10 7 44 44 H 1.09000 * 109.46595 * 59.99908 * 13 10 7 45 45 H 1.09002 * 109.47247 * 180.02562 * 13 10 7 46 46 H 1.09001 * 109.47216 * 300.00133 * 13 10 7 47 47 H 1.08001 * 126.17018 * 180.02562 * 14 4 3 48 48 H 1.07993 * 126.64379 * 0.02562 * 17 16 15 49 49 H 1.08001 * 126.46619 * 180.02562 * 18 17 16 50 50 H 1.09000 * 109.47406 * 59.99430 * 20 19 18 51 51 H 0.96696 * 114.00285 * 300.00314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2905 1.1313 0.0000 4 6 3.5398 0.7414 0.0006 5 6 4.7429 1.6490 0.0064 6 8 5.9346 0.8603 0.0124 7 14 7.3101 1.7367 0.0184 8 6 7.3691 2.8103 -1.5029 9 6 7.3548 2.8118 1.5394 10 6 8.7776 0.5890 0.0251 11 6 8.7406 -0.2934 -1.2242 12 6 10.0680 1.4112 0.0314 13 6 8.7294 -0.2932 1.2743 14 6 3.5737 -0.6525 0.0003 15 6 2.2697 -1.1026 0.0005 16 6 1.8288 -2.5080 0.0017 17 6 2.6374 -3.5994 0.0977 18 6 1.7984 -4.7302 0.0580 19 6 0.5335 -4.2803 -0.0595 20 6 -0.7011 -5.1408 -0.1389 21 8 -0.6123 -5.9971 -1.2796 22 14 -2.2066 -4.0544 -0.2930 23 1 -2.0980 -3.2297 -1.5232 24 1 -3.4231 -4.9024 -0.3719 25 1 -2.2986 -3.1650 0.8926 26 8 0.5549 -2.9375 -0.0878 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.7280 2.2779 -0.8838 31 1 4.7192 2.2782 0.8962 32 1 6.5105 3.4818 -1.5073 33 1 8.2886 3.3957 -1.4991 34 1 7.3430 2.1813 -2.3927 35 1 7.3202 2.1836 2.4294 36 1 8.2742 3.3971 1.5436 37 1 6.4962 3.4832 1.5350 38 1 8.7749 0.3351 -2.1141 39 1 9.5995 -0.9646 -1.2205 40 1 7.8214 -0.8791 -1.2283 41 1 10.0940 2.0396 0.9217 42 1 10.9265 0.7397 0.0349 43 1 10.1024 2.0399 -0.8583 44 1 7.8101 -0.8788 1.2702 45 1 9.5883 -0.9644 1.2784 46 1 8.7558 0.3355 2.1643 47 1 4.4608 -1.2685 0.0011 48 1 3.7136 -3.5983 0.1871 49 1 2.1100 -5.7629 0.1117 50 1 -0.7810 -5.7459 0.7642 51 1 -0.5385 -5.5256 -2.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12175800_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:18:02 Heat of formation + Delta-G solvation = -37.296018 kcal Electronic energy + Delta-G solvation = -29373.529766 eV Core-core repulsion = 25399.867615 eV Total energy + Delta-G solvation = -3973.662151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.77937 -41.95839 -38.13646 -38.02421 -36.84025 -34.48272 -34.21297 -32.74963 -30.26405 -29.54383 -29.08848 -28.97907 -27.85833 -27.37930 -26.66718 -26.01843 -23.31113 -22.49290 -21.14797 -20.73979 -20.34603 -18.93495 -18.14573 -17.65069 -17.61220 -17.00625 -16.73432 -16.13167 -16.00043 -15.70569 -15.66753 -15.42962 -15.08058 -14.86940 -14.72796 -14.50400 -14.21490 -14.02180 -14.01166 -13.97893 -13.79199 -13.49377 -13.43682 -13.28251 -13.23743 -13.12570 -12.93474 -12.92836 -12.90107 -12.41493 -12.29584 -12.11686 -12.08507 -11.79817 -11.63651 -11.62473 -11.42148 -11.15433 -10.81955 -10.59436 -10.37854 -10.08307 -9.69381 -8.94164 -0.12781 0.89516 1.05711 1.14274 1.29553 1.34193 1.53165 1.56824 1.62923 1.73219 1.80309 2.01322 2.05344 2.40792 3.15095 3.27357 3.46409 3.81379 3.93618 3.97520 4.11684 4.11851 4.17261 4.18434 4.29078 4.37498 4.38034 4.45165 4.48998 4.62400 4.66548 4.68066 4.71997 4.73389 4.73700 4.79697 4.81378 4.85945 4.93830 5.00234 5.03580 5.10593 5.10978 5.18056 5.30291 5.35117 5.40165 5.42473 5.48612 5.53412 5.60590 5.63856 5.80464 5.96615 6.30208 6.68003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 N -0.277 5.277 4 C 0.071 3.929 5 C 0.171 3.829 6 O -0.621 6.621 7 Si 1.294 2.706 8 C -0.513 4.513 9 C -0.513 4.513 10 C -0.373 4.373 11 C -0.134 4.134 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.200 4.200 15 C 0.139 3.861 16 C 0.046 3.954 17 C -0.161 4.161 18 C -0.165 4.165 19 C -0.050 4.050 20 C -0.039 4.039 21 O -0.528 6.528 22 Si 0.950 3.050 23 H -0.248 1.248 24 H -0.243 1.243 25 H -0.246 1.246 26 O -0.175 6.175 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.163 0.837 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.138 0.862 51 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -0.450 -0.113 0.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.147 5.147 3 N -0.102 5.102 4 C -0.093 4.093 5 C 0.093 3.907 6 O -0.579 6.579 7 Si 1.425 2.575 8 C -0.615 4.615 9 C -0.615 4.615 10 C -0.417 4.417 11 C -0.191 4.191 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.229 4.229 15 C 0.013 3.987 16 C -0.006 4.006 17 C -0.182 4.182 18 C -0.185 4.185 19 C -0.100 4.100 20 C -0.150 4.150 21 O -0.333 6.333 22 Si 0.770 3.230 23 H -0.171 1.171 24 H -0.166 1.166 25 H -0.169 1.169 26 O -0.073 6.073 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.181 0.819 48 H 0.178 0.822 49 H 0.177 0.823 50 H 0.155 0.845 51 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.379 0.561 0.240 2.456 hybrid contribution 1.453 -0.270 -0.293 1.507 sum -0.926 0.291 -0.053 0.972 Atomic orbital electron populations 1.22014 0.73509 1.04833 1.03914 1.48785 1.06562 1.02518 1.56836 1.77231 1.00916 1.07055 1.24998 1.21888 0.92602 0.94212 1.00581 1.19954 0.79837 0.88827 1.02041 1.85246 1.27284 1.53763 1.91626 0.76617 0.56333 0.59441 0.65064 1.27050 1.04666 1.11417 1.18362 1.27047 1.04652 1.11433 1.18356 1.25770 1.11153 1.06416 0.98364 1.21515 1.02155 0.99349 0.96124 1.21558 0.96676 0.99602 1.01582 1.21518 1.02147 0.99352 0.96128 1.21328 0.94497 0.94178 1.12865 1.18662 0.90946 0.83357 1.05711 1.19305 0.81400 0.91043 1.08803 1.21869 1.01091 0.90127 1.05086 1.21576 0.91353 1.00540 1.05003 1.23012 0.98694 0.80153 1.08186 1.24349 0.99904 0.97174 0.93542 1.86579 1.96245 1.34479 1.15985 0.85638 0.76598 0.78210 0.82542 1.17148 1.16590 1.16884 1.83945 1.28836 1.22457 1.72081 0.90271 0.88645 0.89269 0.90389 0.90381 0.91357 0.90648 0.90772 0.90774 0.90649 0.91356 0.92698 0.92825 0.92060 0.92498 0.92499 0.92506 0.92063 0.92824 0.92698 0.81916 0.82179 0.82305 0.84497 0.77069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.02 11.14 59.85 0.67 0.69 16 2 N -0.36 -1.21 4.06 -63.99 -0.26 -1.47 16 3 N -0.28 -1.16 12.54 33.59 0.42 -0.74 16 4 C 0.07 0.21 7.15 -82.56 -0.59 -0.38 16 5 C 0.17 0.06 5.75 36.00 0.21 0.27 16 6 O -0.62 -0.01 7.87 -35.23 -0.28 -0.28 16 7 Si 1.29 -1.91 8.45 -169.99 -1.44 -3.34 16 8 C -0.51 0.51 8.50 101.05 0.86 1.37 16 9 C -0.51 0.51 8.50 101.05 0.86 1.37 16 10 C -0.37 0.30 0.53 -90.62 -0.05 0.25 16 11 C -0.13 0.06 7.85 37.15 0.29 0.35 16 12 C -0.14 0.13 7.85 37.16 0.29 0.42 16 13 C -0.13 0.06 7.85 37.16 0.29 0.35 16 14 C -0.20 -0.54 9.89 -39.24 -0.39 -0.93 16 15 C 0.14 0.43 6.95 -82.21 -0.57 -0.14 16 16 C 0.05 0.10 7.06 -36.65 -0.26 -0.16 16 17 C -0.16 -0.15 10.61 -39.33 -0.42 -0.56 16 18 C -0.17 -0.07 10.76 -39.82 -0.43 -0.49 16 19 C -0.05 -0.02 6.22 -35.54 -0.22 -0.24 16 20 C -0.04 0.06 2.98 36.01 0.11 0.16 16 21 O -0.53 0.53 12.87 -35.23 -0.45 0.08 16 22 Si 0.95 -1.22 27.38 -169.99 -4.65 -5.88 16 23 H -0.25 0.16 7.11 56.52 0.40 0.56 16 24 H -0.24 0.10 7.11 56.52 0.40 0.51 16 25 H -0.25 0.10 7.11 56.52 0.40 0.50 16 26 O -0.18 -0.28 7.21 4.45 0.03 -0.25 16 27 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.09 -0.04 6.48 -51.93 -0.34 -0.37 16 30 H 0.08 -0.09 7.21 -51.93 -0.37 -0.46 16 31 H 0.08 -0.08 7.21 -51.93 -0.37 -0.46 16 32 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 33 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 34 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 37 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 38 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 39 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 40 H 0.06 -0.02 7.96 -51.93 -0.41 -0.44 16 41 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 42 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 44 H 0.06 -0.02 7.97 -51.93 -0.41 -0.44 16 45 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.05 -0.05 7.80 -51.93 -0.40 -0.45 16 47 H 0.16 0.18 7.89 -52.49 -0.41 -0.24 16 48 H 0.16 -0.15 8.06 -52.49 -0.42 -0.57 16 49 H 0.16 -0.16 8.06 -52.49 -0.42 -0.59 16 50 H 0.14 -0.39 7.96 -51.93 -0.41 -0.81 16 51 H 0.38 -1.53 8.70 45.56 0.40 -1.13 16 LS Contribution 416.79 15.07 6.28 6.28 Total: 0.00 -6.45 416.79 -7.81 -14.26 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: -8.11 Total: -10.99 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 0.65 Total: 2.33 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: 0.16 Total: -2.21 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -0.70 Total: -0.46 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: -6.09 Total: -9.22 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -6.45 -7.81 -14.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.033 kcal (2) G-P(sol) polarization free energy of solvation -6.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds