Wall clock time and date at job start Mon Mar 8 2021 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40048 * 126.11886 * 2 1 4 4 C 1.30872 * 108.78774 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.63943 * 180.26344 * 4 3 2 6 6 O 1.42904 * 109.47482 * 179.69385 * 5 4 3 7 7 Si 1.63102 * 114.00078 * 179.97438 * 6 5 4 8 8 C 1.86292 * 109.47318 * 300.00222 * 7 6 5 9 9 C 1.86309 * 109.47019 * 60.00346 * 7 6 5 10 10 C 1.86298 * 109.46906 * 180.02562 * 7 6 5 11 11 C 1.52993 * 109.47132 * 60.00307 * 10 7 6 12 12 C 1.53009 * 109.47018 * 180.02562 * 10 7 6 13 13 C 1.53004 * 109.47334 * 300.00102 * 10 7 6 14 14 C 1.39435 * 108.72259 * 0.02562 * 4 3 2 15 15 C 1.36505 * 126.12308 * 179.97438 * 2 1 3 16 16 C 1.47290 * 126.45592 * 359.97438 * 15 2 1 17 17 C 1.36173 * 125.94435 * 184.97508 * 16 15 2 18 18 C 1.40868 * 106.72196 * 180.02562 * 17 16 15 19 19 C 1.34762 * 107.06597 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.65082 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46902 * 299.99468 * 20 19 18 22 22 Si 1.86301 * 109.47314 * 179.97438 * 20 19 18 23 23 H 1.48495 * 109.47036 * 59.99789 * 22 20 19 24 24 H 1.48503 * 109.47065 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47001 * 299.99719 * 22 20 19 26 26 O 1.34329 * 108.70317 * 359.73307 * 19 18 17 27 27 H 1.08999 * 109.46969 * 270.00102 * 1 2 3 28 28 H 1.08997 * 109.47165 * 30.00097 * 1 2 3 29 29 H 1.08996 * 109.46979 * 149.99952 * 1 2 3 30 30 H 1.09003 * 109.47550 * 299.69460 * 5 4 3 31 31 H 1.09003 * 109.47592 * 59.69286 * 5 4 3 32 32 H 1.09002 * 109.47169 * 59.99985 * 8 7 6 33 33 H 1.09005 * 109.47386 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47183 * 299.99997 * 8 7 6 35 35 H 1.09001 * 109.46826 * 59.99681 * 9 7 6 36 36 H 1.08992 * 109.46858 * 179.97438 * 9 7 6 37 37 H 1.08995 * 109.46833 * 300.00118 * 9 7 6 38 38 H 1.09004 * 109.47525 * 59.99974 * 11 10 7 39 39 H 1.09002 * 109.47112 * 179.97438 * 11 10 7 40 40 H 1.08997 * 109.47497 * 299.99640 * 11 10 7 41 41 H 1.09000 * 109.46750 * 59.99812 * 12 10 7 42 42 H 1.08994 * 109.46785 * 180.02562 * 12 10 7 43 43 H 1.08995 * 109.46592 * 300.00103 * 12 10 7 44 44 H 1.09000 * 109.46595 * 59.99908 * 13 10 7 45 45 H 1.09002 * 109.47247 * 180.02562 * 13 10 7 46 46 H 1.09001 * 109.47216 * 300.00133 * 13 10 7 47 47 H 1.08001 * 126.17018 * 180.02562 * 14 4 3 48 48 H 1.07993 * 126.64379 * 0.02562 * 17 16 15 49 49 H 1.08001 * 126.46619 * 180.02562 * 18 17 16 50 50 H 1.09000 * 109.47406 * 59.99430 * 20 19 18 51 51 H 0.96696 * 114.00285 * 300.00314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2905 1.1313 0.0000 4 6 3.5398 0.7414 0.0006 5 6 4.7429 1.6490 0.0064 6 8 5.9346 0.8603 0.0124 7 14 7.3101 1.7367 0.0184 8 6 7.3691 2.8103 -1.5029 9 6 7.3548 2.8118 1.5394 10 6 8.7776 0.5890 0.0251 11 6 8.7406 -0.2934 -1.2242 12 6 10.0680 1.4112 0.0314 13 6 8.7294 -0.2932 1.2743 14 6 3.5737 -0.6525 0.0003 15 6 2.2697 -1.1026 0.0005 16 6 1.8288 -2.5080 0.0017 17 6 2.6374 -3.5994 0.0977 18 6 1.7984 -4.7302 0.0580 19 6 0.5335 -4.2803 -0.0595 20 6 -0.7011 -5.1408 -0.1389 21 8 -0.6123 -5.9971 -1.2796 22 14 -2.2066 -4.0544 -0.2930 23 1 -2.0980 -3.2297 -1.5232 24 1 -3.4231 -4.9024 -0.3719 25 1 -2.2986 -3.1650 0.8926 26 8 0.5549 -2.9375 -0.0878 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.7280 2.2779 -0.8838 31 1 4.7192 2.2782 0.8962 32 1 6.5105 3.4818 -1.5073 33 1 8.2886 3.3957 -1.4991 34 1 7.3430 2.1813 -2.3927 35 1 7.3202 2.1836 2.4294 36 1 8.2742 3.3971 1.5436 37 1 6.4962 3.4832 1.5350 38 1 8.7749 0.3351 -2.1141 39 1 9.5995 -0.9646 -1.2205 40 1 7.8214 -0.8791 -1.2283 41 1 10.0940 2.0396 0.9217 42 1 10.9265 0.7397 0.0349 43 1 10.1024 2.0399 -0.8583 44 1 7.8101 -0.8788 1.2702 45 1 9.5883 -0.9644 1.2784 46 1 8.7558 0.3355 2.1643 47 1 4.4608 -1.2685 0.0011 48 1 3.7136 -3.5983 0.1871 49 1 2.1100 -5.7629 0.1117 50 1 -0.7810 -5.7459 0.7642 51 1 -0.5385 -5.5256 -2.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12175800_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:18:01 Heat of formation + Delta-G solvation = -30.328430 kcal Electronic energy + Delta-G solvation = -29373.227629 eV Core-core repulsion = 25399.867615 eV Total energy + Delta-G solvation = -3973.360014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.82394 -42.08896 -38.08079 -37.95653 -36.77267 -34.54766 -34.28505 -32.80558 -30.30099 -29.48466 -29.00455 -28.98154 -27.77973 -27.31527 -26.67125 -26.05381 -23.36381 -22.52300 -21.24081 -20.80488 -20.30857 -18.93773 -18.14449 -17.68390 -17.58098 -16.98768 -16.78169 -16.13417 -15.96274 -15.70040 -15.65305 -15.43102 -15.05614 -14.79482 -14.68685 -14.56115 -14.22174 -14.00624 -13.98637 -13.92100 -13.79304 -13.44138 -13.36238 -13.27850 -13.13285 -13.12199 -12.88745 -12.86311 -12.82408 -12.34501 -12.25575 -12.07257 -12.04061 -11.84675 -11.65323 -11.57594 -11.38398 -11.21753 -10.82423 -10.55799 -10.32201 -10.01201 -9.80273 -9.04292 -0.22472 0.92813 1.04943 1.13127 1.32236 1.39891 1.46536 1.60040 1.65083 1.83358 1.86855 1.90752 2.16569 2.48789 3.17336 3.36391 3.43827 3.79571 3.93099 3.95382 4.17932 4.18684 4.19126 4.21636 4.34364 4.43073 4.45637 4.47463 4.52655 4.53912 4.63181 4.77776 4.78802 4.79330 4.83401 4.84180 4.88367 4.90162 4.90474 4.99206 5.06928 5.15705 5.16241 5.22402 5.33545 5.39475 5.42749 5.48065 5.51647 5.54016 5.65172 5.70137 5.73287 5.90375 6.52499 6.54745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 N -0.305 5.305 4 C 0.064 3.936 5 C 0.165 3.835 6 O -0.630 6.630 7 Si 1.326 2.674 8 C -0.521 4.521 9 C -0.521 4.521 10 C -0.379 4.379 11 C -0.138 4.138 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.212 4.212 15 C 0.133 3.867 16 C 0.023 3.977 17 C -0.156 4.156 18 C -0.173 4.173 19 C -0.049 4.049 20 C -0.033 4.033 21 O -0.537 6.537 22 Si 0.979 3.021 23 H -0.260 1.260 24 H -0.254 1.254 25 H -0.259 1.259 26 O -0.183 6.183 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.173 0.827 48 H 0.175 0.825 49 H 0.174 0.826 50 H 0.154 0.846 51 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -0.738 -0.084 0.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.158 5.158 3 N -0.130 5.130 4 C -0.099 4.099 5 C 0.088 3.912 6 O -0.588 6.588 7 Si 1.457 2.543 8 C -0.623 4.623 9 C -0.622 4.622 10 C -0.422 4.422 11 C -0.195 4.195 12 C -0.199 4.199 13 C -0.195 4.195 14 C -0.241 4.241 15 C 0.006 3.994 16 C -0.028 4.028 17 C -0.177 4.177 18 C -0.192 4.192 19 C -0.100 4.100 20 C -0.144 4.144 21 O -0.344 6.344 22 Si 0.801 3.199 23 H -0.183 1.183 24 H -0.177 1.177 25 H -0.183 1.183 26 O -0.081 6.081 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.191 0.809 48 H 0.192 0.808 49 H 0.191 0.809 50 H 0.172 0.828 51 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.245 0.275 0.259 2.277 hybrid contribution 1.389 -0.232 -0.316 1.444 sum -0.856 0.043 -0.057 0.859 Atomic orbital electron populations 1.22194 0.72430 1.05519 1.04660 1.49036 1.07380 1.02427 1.56918 1.77160 1.01588 1.07903 1.26351 1.22332 0.92997 0.94792 0.99784 1.20142 0.79108 0.88586 1.03354 1.85229 1.27492 1.54314 1.91769 0.76046 0.55230 0.58586 0.64471 1.27131 1.05063 1.11654 1.18408 1.27128 1.05048 1.11670 1.18403 1.25877 1.11835 1.06549 0.97903 1.21549 1.01829 0.99464 0.96627 1.21610 0.96294 0.99683 1.02285 1.21552 1.01827 0.99467 0.96626 1.21538 0.94831 0.94392 1.13342 1.18921 0.91291 0.83849 1.05308 1.19367 0.81888 0.90984 1.10578 1.22150 1.01877 0.89923 1.03769 1.21810 0.91242 1.01105 1.05076 1.23429 0.99505 0.79842 1.07192 1.24420 0.98676 0.97056 0.94244 1.86556 1.96123 1.35014 1.16737 0.85225 0.76115 0.77309 0.81245 1.18343 1.17733 1.18309 1.83939 1.28770 1.23121 1.72271 0.89494 0.87661 0.88884 0.89017 0.89024 0.91009 0.90268 0.91101 0.91101 0.90268 0.91013 0.92213 0.93383 0.92206 0.91817 0.93148 0.91829 0.92198 0.93381 0.92211 0.80926 0.80784 0.80855 0.82823 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.14 127.77 1.42 1.55 16 2 N -0.37 -2.86 4.06 -356.36 -1.45 -4.31 16 3 N -0.30 -2.84 12.54 -47.64 -0.60 -3.44 16 4 C 0.06 0.43 7.15 42.99 0.31 0.73 16 5 C 0.17 0.12 5.75 71.23 0.41 0.52 16 6 O -0.63 0.03 7.87 -148.98 -1.17 -1.15 16 7 Si 1.33 -4.30 8.45 68.60 0.58 -3.72 16 8 C -0.52 1.29 8.50 113.37 0.96 2.26 16 9 C -0.52 1.29 8.50 113.37 0.96 2.25 16 10 C -0.38 0.58 0.53 -10.79 -0.01 0.57 16 11 C -0.14 0.08 7.85 71.98 0.56 0.64 16 12 C -0.14 0.29 7.85 71.99 0.56 0.85 16 13 C -0.14 0.08 7.85 71.98 0.56 0.64 16 14 C -0.21 -1.31 9.89 22.49 0.22 -1.09 16 15 C 0.13 0.95 6.95 40.73 0.28 1.23 16 16 C 0.02 0.11 7.06 24.17 0.17 0.28 16 17 C -0.16 -0.27 10.61 22.43 0.24 -0.03 16 18 C -0.17 -0.03 10.76 22.12 0.24 0.20 16 19 C -0.05 -0.02 6.22 24.89 0.15 0.13 16 20 C -0.03 0.12 2.98 71.24 0.21 0.33 16 21 O -0.54 1.53 12.87 -148.98 -1.92 -0.38 16 22 Si 0.98 -2.42 27.38 68.60 1.88 -0.54 16 23 H -0.26 0.21 7.11 99.48 0.71 0.92 16 24 H -0.25 0.20 7.11 99.48 0.71 0.90 16 25 H -0.26 0.09 7.11 99.48 0.71 0.80 16 26 O -0.18 -0.66 7.21 -6.98 -0.05 -0.71 16 27 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.09 0.02 6.48 -2.39 -0.02 0.00 16 30 H 0.09 -0.22 7.21 -2.39 -0.02 -0.24 16 31 H 0.09 -0.22 7.21 -2.39 -0.02 -0.23 16 32 H 0.07 -0.22 7.48 -2.39 -0.02 -0.24 16 33 H 0.08 -0.25 7.79 -2.38 -0.02 -0.27 16 34 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 35 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 36 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 37 H 0.07 -0.22 7.48 -2.39 -0.02 -0.24 16 38 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 39 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 41 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 42 H 0.05 -0.04 8.14 -2.39 -0.02 -0.05 16 43 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 44 H 0.06 -0.02 7.97 -2.39 -0.02 -0.04 16 45 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.06 -0.10 7.80 -2.39 -0.02 -0.12 16 47 H 0.17 0.48 7.89 -2.91 -0.02 0.46 16 48 H 0.17 -0.37 8.06 -2.91 -0.02 -0.39 16 49 H 0.17 -0.56 8.06 -2.91 -0.02 -0.58 16 50 H 0.15 -1.07 7.96 -2.39 -0.02 -1.09 16 51 H 0.39 -3.38 8.70 -74.06 -0.64 -4.02 16 Total: 0.00 -14.58 416.79 5.57 -9.01 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: 1.02 Total: -5.85 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 7.28 Total: 11.09 kcal Atomic # 7 Polarization: -5.71 SS G_CDS: -2.04 Total: -7.75 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: -3.14 Total: -2.24 kcal Atomic # 14 Polarization: -6.72 SS G_CDS: 2.46 Total: -4.26 kcal Total: -14.58 5.57 -9.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.321 kcal (2) G-P(sol) polarization free energy of solvation -14.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds