Wall clock time and date at job start Mon Mar 8 2021 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 C 1.53003 * 109.46976 * 239.99881 * 2 1 3 5 5 Si 1.86306 * 109.47293 * 120.00156 * 2 1 3 6 6 C 1.86303 * 109.46761 * 300.00204 * 5 2 1 7 7 C 1.86294 * 109.47469 * 180.02562 * 5 2 1 8 8 O 1.63107 * 109.46995 * 59.99466 * 5 2 1 9 9 C 1.42898 * 113.99636 * 180.02562 * 8 5 2 10 10 C 1.50700 * 109.46825 * 180.02562 * 9 8 5 11 11 C 1.33013 * 122.54266 * 0.02782 * 10 9 8 12 12 S 1.75804 * 109.98542 * 180.24501 * 11 10 9 13 13 C 1.75844 * 91.18082 * 359.65126 * 12 11 10 14 14 C 1.34778 * 109.53420 * 0.34396 * 13 12 11 15 15 C 1.47868 * 122.80816 * 179.76007 * 14 13 12 16 16 C 1.35923 * 125.92645 * 309.68708 * 15 14 13 17 17 C 1.41057 * 106.74238 * 179.85722 * 16 15 14 18 18 C 1.34640 * 107.02572 * 0.40967 * 17 16 15 19 19 C 1.50700 * 125.67018 * 179.71270 * 18 17 16 20 20 O 1.42904 * 109.46875 * 300.01770 * 19 18 17 21 21 Si 1.86295 * 109.47608 * 180.02562 * 19 18 17 22 22 H 1.48507 * 109.46991 * 59.99436 * 21 19 18 23 23 H 1.48490 * 109.47470 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47026 * 300.00362 * 21 19 18 25 25 O 1.34437 * 108.66538 * 359.74609 * 18 17 16 26 26 H 1.09004 * 109.47086 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.47092 * 59.99457 * 1 2 3 28 28 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47449 * 299.99729 * 3 2 1 31 31 H 1.08996 * 109.47227 * 60.00270 * 3 2 1 32 32 H 1.08999 * 109.46984 * 299.99823 * 4 2 1 33 33 H 1.09002 * 109.47128 * 60.00677 * 4 2 1 34 34 H 1.09005 * 109.46673 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46802 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.47051 * 299.99305 * 6 5 2 37 37 H 1.08997 * 109.47661 * 59.99893 * 6 5 2 38 38 H 1.09004 * 109.46980 * 299.99882 * 7 5 2 39 39 H 1.08999 * 109.47048 * 59.99401 * 7 5 2 40 40 H 1.08992 * 109.47302 * 180.02562 * 7 5 2 41 41 H 1.08999 * 109.47283 * 60.00497 * 9 8 5 42 42 H 1.08997 * 109.46912 * 299.99783 * 9 8 5 43 43 H 1.08002 * 125.00330 * 359.97106 * 11 10 9 44 44 H 1.07999 * 125.23355 * 180.02562 * 13 12 11 45 45 H 1.07993 * 126.62728 * 359.97438 * 16 15 14 46 46 H 1.08001 * 126.48444 * 180.16178 * 17 16 15 47 47 H 1.08995 * 109.46896 * 60.01280 * 19 18 17 48 48 H 0.96693 * 113.99900 * 299.99998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 6 1.4721 -4.5781 2.5486 11 6 0.7114 -4.9718 1.5309 12 16 0.2413 -6.6520 1.7469 13 6 1.1392 -6.7471 3.2559 14 6 1.7162 -5.5565 3.5128 15 6 2.5395 -5.3081 4.7157 16 6 2.1859 -5.5928 5.9969 17 6 3.2649 -5.1958 6.8140 18 6 4.2088 -4.6858 6.0004 19 6 5.5389 -4.1290 6.4382 20 8 5.3261 -3.0301 7.3267 21 14 6.4897 -3.5458 4.9461 22 1 5.7155 -2.4878 4.2484 23 1 7.8001 -2.9967 5.3776 24 1 6.7107 -4.6876 4.0227 25 8 3.7671 -4.7552 4.7326 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5136 3.9323 36 1 1.8933 1.0276 3.0423 37 1 0.4400 0.0000 3.0423 38 1 4.3777 -1.3912 0.6316 39 1 4.3769 0.1501 1.5217 40 1 4.3773 -1.3919 2.4113 41 1 1.6636 -2.7113 3.5652 42 1 3.1173 -3.2253 2.6758 43 1 0.4214 -4.3495 0.6972 44 1 1.2124 -7.6232 3.8831 45 1 1.2588 -6.0387 6.3255 46 1 3.3214 -5.2807 7.8892 47 1 6.1069 -4.9056 6.9505 48 1 4.8257 -2.3004 6.9367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12175800_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:46:36 Heat of formation + Delta-G solvation = -84.121283 kcal Electronic energy + Delta-G solvation = -27996.559728 eV Core-core repulsion = 24268.182628 eV Total energy + Delta-G solvation = -3728.377100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.62901 -39.78035 -38.02973 -37.32359 -36.88591 -34.03532 -32.14040 -30.44486 -29.52419 -29.13709 -28.13628 -27.90561 -27.42974 -26.28213 -23.97404 -22.60642 -21.63026 -20.48591 -19.89319 -19.07524 -18.50078 -17.62411 -17.30729 -17.09725 -16.60282 -16.41197 -15.93775 -15.72908 -15.46604 -14.94370 -14.89291 -14.79040 -14.49779 -14.08307 -14.05625 -13.92991 -13.84155 -13.74494 -13.57941 -13.45166 -13.30089 -13.27597 -13.10849 -12.97869 -12.97264 -12.82967 -12.45868 -12.20925 -12.06887 -12.01142 -11.98198 -11.73372 -11.65548 -11.40276 -10.93587 -10.64645 -10.46483 -10.12745 -10.10519 -9.52867 -9.01426 -0.17794 0.51145 0.57964 0.89205 0.99715 1.31467 1.34747 1.40877 1.44792 1.68498 1.72616 1.87143 1.99407 2.07457 2.37254 3.23880 3.50638 3.84523 3.95006 4.04699 4.06990 4.07099 4.13570 4.27429 4.36287 4.36959 4.41879 4.54589 4.63527 4.64721 4.68762 4.69148 4.71629 4.77028 4.77361 4.80919 4.90592 4.95168 5.01632 5.05613 5.05748 5.06645 5.17826 5.27213 5.29878 5.37277 5.41276 5.46374 5.49549 5.55673 5.61169 6.04079 6.35773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.284 2.716 6 C -0.511 4.511 7 C -0.514 4.514 8 O -0.622 6.622 9 C 0.148 3.852 10 C -0.101 4.101 11 C -0.179 4.179 12 S 0.133 5.867 13 C -0.188 4.188 14 C -0.035 4.035 15 C 0.052 3.948 16 C -0.188 4.188 17 C -0.166 4.166 18 C -0.060 4.060 19 C -0.037 4.037 20 O -0.528 6.528 21 Si 0.942 3.058 22 H -0.245 1.245 23 H -0.243 1.243 24 H -0.244 1.244 25 O -0.169 6.169 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.180 0.820 44 H 0.173 0.827 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 0.013 0.124 0.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.416 2.584 6 C -0.613 4.613 7 C -0.616 4.616 8 O -0.581 6.581 9 C 0.070 3.930 10 C -0.113 4.113 11 C -0.314 4.314 12 S 0.399 5.601 13 C -0.324 4.324 14 C -0.048 4.048 15 C 0.000 4.000 16 C -0.208 4.208 17 C -0.185 4.185 18 C -0.110 4.110 19 C -0.148 4.148 20 O -0.334 6.334 21 Si 0.762 3.238 22 H -0.168 1.168 23 H -0.166 1.166 24 H -0.167 1.167 25 O -0.067 6.067 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.198 0.802 44 H 0.191 0.809 45 H 0.171 0.829 46 H 0.173 0.827 47 H 0.154 0.846 48 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.502 -1.231 -1.480 1.990 hybrid contribution 0.312 1.431 1.157 1.867 sum -0.190 0.200 -0.323 0.425 Atomic orbital electron populations 1.21512 0.93754 1.01988 1.01849 1.25747 1.00696 1.02631 1.12521 1.21554 1.00804 0.94852 1.02199 1.21515 1.00654 1.00192 0.96756 0.76766 0.63109 0.53290 0.65250 1.27019 1.07090 1.09501 1.17646 1.27059 1.25059 1.04829 1.04608 1.85282 1.79393 1.46068 1.47402 1.20459 0.97755 0.87733 0.87052 1.18717 1.01583 0.96070 0.94892 1.25364 1.04151 0.97946 1.03945 1.84488 1.49788 1.08757 1.17042 1.25774 1.04090 1.00693 1.01809 1.16397 1.01059 0.93430 0.93919 1.19950 0.84157 1.02076 0.93816 1.21888 1.01329 1.06381 0.91156 1.21541 0.93397 1.02533 1.01004 1.22914 0.99448 1.07289 0.81354 1.24290 0.93556 0.92739 1.04201 1.86574 1.77967 1.28096 1.40735 0.85742 0.80234 0.82121 0.75668 1.16794 1.16650 1.16713 1.84006 1.29174 1.63905 1.29618 0.92665 0.92747 0.92196 0.92500 0.92430 0.92487 0.92198 0.92736 0.92683 0.91488 0.90599 0.90752 0.90746 0.90560 0.91483 0.91319 0.91201 0.80247 0.80948 0.82905 0.82740 0.84641 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.17 0.53 -90.62 -0.05 0.12 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.13 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.28 -1.00 8.45 -169.99 -1.44 -2.43 16 6 C -0.51 0.27 8.50 101.05 0.86 1.13 16 7 C -0.51 0.07 8.50 101.05 0.86 0.93 16 8 O -0.62 -0.33 7.42 -35.23 -0.26 -0.60 16 9 C 0.15 0.14 4.81 36.01 0.17 0.32 16 10 C -0.10 -0.17 5.82 -105.96 -0.62 -0.79 16 11 C -0.18 -0.17 10.41 28.92 0.30 0.13 16 12 S 0.13 0.00 23.32 -107.50 -2.51 -2.51 16 13 C -0.19 -0.07 11.00 29.51 0.32 0.26 16 14 C -0.03 -0.06 5.70 -106.71 -0.61 -0.67 16 15 C 0.05 0.10 6.32 -36.47 -0.23 -0.13 16 16 C -0.19 -0.20 10.80 -39.34 -0.42 -0.62 16 17 C -0.17 -0.14 10.77 -39.79 -0.43 -0.57 16 18 C -0.06 -0.06 6.22 -35.58 -0.22 -0.28 16 19 C -0.04 0.03 2.98 36.01 0.11 0.13 16 20 O -0.53 0.28 12.87 -35.23 -0.45 -0.18 16 21 Si 0.94 -0.22 27.38 -169.99 -4.65 -4.88 16 22 H -0.24 0.01 7.11 56.52 0.40 0.41 16 23 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 24 H -0.24 -0.26 7.11 56.52 0.40 0.14 16 25 O -0.17 -0.36 8.59 4.39 0.04 -0.33 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 -0.01 7.96 -51.93 -0.41 -0.42 16 33 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.05 7.48 -51.93 -0.39 -0.43 16 36 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 38 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 39 H 0.08 -0.06 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 0.01 7.48 -51.93 -0.39 -0.38 16 41 H 0.07 0.00 7.21 -51.93 -0.37 -0.37 16 42 H 0.07 0.04 6.92 -51.93 -0.36 -0.31 16 43 H 0.18 0.01 7.48 -52.49 -0.39 -0.38 16 44 H 0.17 -0.26 8.06 -52.49 -0.42 -0.68 16 45 H 0.15 -0.08 8.06 -52.49 -0.42 -0.51 16 46 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 47 H 0.14 -0.29 7.96 -51.93 -0.41 -0.71 16 48 H 0.38 -1.38 8.70 45.56 0.40 -0.99 16 LS Contribution 405.36 15.07 6.11 6.11 Total: 0.00 -4.38 405.36 -9.56 -13.95 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -7.32 Total: -10.12 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 0.92 Total: 0.99 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -0.68 Total: -1.10 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -6.09 Total: -7.31 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.51 Total: -2.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -4.38 -9.56 -13.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.176 kcal (2) G-P(sol) polarization free energy of solvation -4.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds