Wall clock time and date at job start Mon Mar 8 2021 04:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 C 1.53003 * 109.46976 * 239.99881 * 2 1 3 5 5 Si 1.86306 * 109.47293 * 120.00156 * 2 1 3 6 6 C 1.86303 * 109.46761 * 300.00204 * 5 2 1 7 7 C 1.86294 * 109.47469 * 180.02562 * 5 2 1 8 8 O 1.63107 * 109.46995 * 59.99466 * 5 2 1 9 9 C 1.42898 * 113.99636 * 180.02562 * 8 5 2 10 10 C 1.50700 * 109.46825 * 180.02562 * 9 8 5 11 11 C 1.33013 * 122.54266 * 0.02782 * 10 9 8 12 12 S 1.75804 * 109.98542 * 180.24501 * 11 10 9 13 13 C 1.75844 * 91.18082 * 359.65126 * 12 11 10 14 14 C 1.34778 * 109.53420 * 0.34396 * 13 12 11 15 15 C 1.47868 * 122.80816 * 179.76007 * 14 13 12 16 16 C 1.35923 * 125.92645 * 309.68708 * 15 14 13 17 17 C 1.41057 * 106.74238 * 179.85722 * 16 15 14 18 18 C 1.34640 * 107.02572 * 0.40967 * 17 16 15 19 19 C 1.50700 * 125.67018 * 179.71270 * 18 17 16 20 20 O 1.42904 * 109.46875 * 300.01770 * 19 18 17 21 21 Si 1.86295 * 109.47608 * 180.02562 * 19 18 17 22 22 H 1.48507 * 109.46991 * 59.99436 * 21 19 18 23 23 H 1.48490 * 109.47470 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47026 * 300.00362 * 21 19 18 25 25 O 1.34437 * 108.66538 * 359.74609 * 18 17 16 26 26 H 1.09004 * 109.47086 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.47092 * 59.99457 * 1 2 3 28 28 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47449 * 299.99729 * 3 2 1 31 31 H 1.08996 * 109.47227 * 60.00270 * 3 2 1 32 32 H 1.08999 * 109.46984 * 299.99823 * 4 2 1 33 33 H 1.09002 * 109.47128 * 60.00677 * 4 2 1 34 34 H 1.09005 * 109.46673 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46802 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.47051 * 299.99305 * 6 5 2 37 37 H 1.08997 * 109.47661 * 59.99893 * 6 5 2 38 38 H 1.09004 * 109.46980 * 299.99882 * 7 5 2 39 39 H 1.08999 * 109.47048 * 59.99401 * 7 5 2 40 40 H 1.08992 * 109.47302 * 180.02562 * 7 5 2 41 41 H 1.08999 * 109.47283 * 60.00497 * 9 8 5 42 42 H 1.08997 * 109.46912 * 299.99783 * 9 8 5 43 43 H 1.08002 * 125.00330 * 359.97106 * 11 10 9 44 44 H 1.07999 * 125.23355 * 180.02562 * 13 12 11 45 45 H 1.07993 * 126.62728 * 359.97438 * 16 15 14 46 46 H 1.08001 * 126.48444 * 180.16178 * 17 16 15 47 47 H 1.08995 * 109.46896 * 60.01280 * 19 18 17 48 48 H 0.96693 * 113.99900 * 299.99998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 6 1.4721 -4.5781 2.5486 11 6 0.7114 -4.9718 1.5309 12 16 0.2413 -6.6520 1.7469 13 6 1.1392 -6.7471 3.2559 14 6 1.7162 -5.5565 3.5128 15 6 2.5395 -5.3081 4.7157 16 6 2.1859 -5.5928 5.9969 17 6 3.2649 -5.1958 6.8140 18 6 4.2088 -4.6858 6.0004 19 6 5.5389 -4.1290 6.4382 20 8 5.3261 -3.0301 7.3267 21 14 6.4897 -3.5458 4.9461 22 1 5.7155 -2.4878 4.2484 23 1 7.8001 -2.9967 5.3776 24 1 6.7107 -4.6876 4.0227 25 8 3.7671 -4.7552 4.7326 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5136 3.9323 36 1 1.8933 1.0276 3.0423 37 1 0.4400 0.0000 3.0423 38 1 4.3777 -1.3912 0.6316 39 1 4.3769 0.1501 1.5217 40 1 4.3773 -1.3919 2.4113 41 1 1.6636 -2.7113 3.5652 42 1 3.1173 -3.2253 2.6758 43 1 0.4214 -4.3495 0.6972 44 1 1.2124 -7.6232 3.8831 45 1 1.2588 -6.0387 6.3255 46 1 3.3214 -5.2807 7.8892 47 1 6.1069 -4.9056 6.9505 48 1 4.8257 -2.3004 6.9367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12175800_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:46:35 Heat of formation + Delta-G solvation = -73.624646 kcal Electronic energy + Delta-G solvation = -27996.104560 eV Core-core repulsion = 24268.182628 eV Total energy + Delta-G solvation = -3727.921932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.128 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.67408 -39.80212 -37.97162 -37.33621 -36.85313 -34.07835 -32.15661 -30.45258 -29.49475 -29.10928 -28.14614 -27.85743 -27.41000 -26.27970 -23.98880 -22.63902 -21.65921 -20.45998 -19.93129 -19.08564 -18.46667 -17.63950 -17.31407 -17.10595 -16.61351 -16.43675 -15.90858 -15.68843 -15.48740 -14.93905 -14.87017 -14.77161 -14.50347 -14.08464 -14.04304 -13.93160 -13.85694 -13.73341 -13.56666 -13.43642 -13.29659 -13.25110 -13.11054 -12.97267 -12.93285 -12.79011 -12.41723 -12.26801 -12.08054 -12.01013 -11.98192 -11.70934 -11.62594 -11.40177 -10.97829 -10.61173 -10.45288 -10.13430 -10.09905 -9.55101 -9.03774 -0.20331 0.47312 0.56940 0.86619 1.02411 1.28676 1.37419 1.39389 1.43346 1.69363 1.73288 1.85754 2.03570 2.05737 2.40233 3.35111 3.52474 3.84989 3.93595 4.04252 4.09448 4.10858 4.12476 4.25087 4.32831 4.44793 4.47411 4.55623 4.65158 4.66231 4.70506 4.72590 4.72893 4.76465 4.81397 4.82566 4.88930 4.98983 5.00767 5.05285 5.08194 5.08816 5.21075 5.23756 5.33360 5.39273 5.42805 5.46316 5.53230 5.58658 5.59491 6.01392 6.55949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.374 4.374 3 C -0.142 4.142 4 C -0.138 4.138 5 Si 1.306 2.694 6 C -0.516 4.516 7 C -0.522 4.522 8 O -0.629 6.629 9 C 0.144 3.856 10 C -0.115 4.115 11 C -0.189 4.189 12 S 0.151 5.849 13 C -0.187 4.187 14 C -0.051 4.051 15 C 0.038 3.962 16 C -0.189 4.189 17 C -0.172 4.172 18 C -0.065 4.065 19 C -0.028 4.028 20 O -0.537 6.537 21 Si 0.962 3.038 22 H -0.250 1.250 23 H -0.251 1.251 24 H -0.266 1.266 25 O -0.182 6.182 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.184 0.816 44 H 0.189 0.811 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.152 0.848 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -0.042 0.796 0.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.417 4.417 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.437 2.563 6 C -0.618 4.618 7 C -0.624 4.624 8 O -0.588 6.588 9 C 0.066 3.934 10 C -0.127 4.127 11 C -0.325 4.325 12 S 0.418 5.582 13 C -0.323 4.323 14 C -0.065 4.065 15 C -0.014 4.014 16 C -0.209 4.209 17 C -0.191 4.191 18 C -0.115 4.115 19 C -0.139 4.139 20 O -0.344 6.344 21 Si 0.785 3.215 22 H -0.174 1.174 23 H -0.174 1.174 24 H -0.190 1.190 25 O -0.080 6.080 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.201 0.799 44 H 0.207 0.793 45 H 0.184 0.816 46 H 0.184 0.816 47 H 0.169 0.831 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.696 -1.270 -0.815 1.662 hybrid contribution 0.375 1.441 0.916 1.748 sum -0.321 0.172 0.101 0.378 Atomic orbital electron populations 1.21546 0.93980 1.01926 1.01964 1.25785 1.00543 1.02909 1.12493 1.21610 1.01262 0.94613 1.02391 1.21552 1.00939 1.00110 0.96867 0.76386 0.62336 0.52675 0.64875 1.27059 1.07046 1.09949 1.17723 1.27163 1.25769 1.05164 1.04259 1.85274 1.79537 1.46603 1.47419 1.20498 0.97696 0.87778 0.87388 1.18890 1.02002 0.96501 0.95269 1.25498 1.04244 0.98718 1.03997 1.84386 1.49276 1.07874 1.16656 1.26041 1.03386 1.00873 1.01988 1.16525 1.01766 0.93939 0.94234 1.20121 0.84255 1.02736 0.94291 1.22114 1.01854 1.06040 0.90888 1.21745 0.93283 1.02477 1.01608 1.23244 1.00017 1.07178 0.81055 1.24270 0.92709 0.93086 1.03846 1.86547 1.78235 1.28578 1.41052 0.85462 0.79717 0.80920 0.75399 1.17367 1.17434 1.19032 1.84000 1.29489 1.64210 1.30322 0.92112 0.93090 0.92363 0.91908 0.92841 0.91739 0.92394 0.93047 0.92312 0.91365 0.89995 0.90865 0.91053 0.89894 0.91893 0.90735 0.91387 0.79873 0.79335 0.81617 0.81574 0.83107 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.58 16 2 C -0.37 0.23 0.53 -10.79 -0.01 0.23 16 3 C -0.14 0.21 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.31 -1.59 8.45 68.60 0.58 -1.01 16 6 C -0.52 0.59 8.50 113.37 0.96 1.55 16 7 C -0.52 -0.10 8.50 113.37 0.96 0.87 16 8 O -0.63 -1.10 7.42 -148.98 -1.11 -2.21 16 9 C 0.14 0.40 4.81 71.24 0.34 0.74 16 10 C -0.12 -0.48 5.82 -20.72 -0.12 -0.60 16 11 C -0.19 -0.47 10.41 66.65 0.69 0.22 16 12 S 0.15 0.00 23.32 -56.49 -1.32 -1.32 16 13 C -0.19 -0.13 11.00 67.03 0.74 0.61 16 14 C -0.05 -0.19 5.70 -21.21 -0.12 -0.32 16 15 C 0.04 0.16 6.32 24.28 0.15 0.32 16 16 C -0.19 -0.37 10.80 22.42 0.24 -0.13 16 17 C -0.17 -0.23 10.77 22.14 0.24 0.00 16 18 C -0.07 -0.12 6.22 24.86 0.15 0.03 16 19 C -0.03 0.05 2.98 71.24 0.21 0.26 16 20 O -0.54 0.90 12.87 -148.98 -1.92 -1.02 16 21 Si 0.96 0.11 27.38 68.60 1.88 1.98 16 22 H -0.25 -0.18 7.11 99.48 0.71 0.52 16 23 H -0.25 -0.29 7.11 99.48 0.71 0.42 16 24 H -0.27 -0.96 7.11 99.48 0.71 -0.25 16 25 O -0.18 -0.90 8.59 -7.20 -0.06 -0.96 16 26 H 0.06 -0.08 7.79 -2.38 -0.02 -0.10 16 27 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.06 0.01 7.97 -2.39 -0.02 -0.01 16 29 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 32 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 33 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 -0.04 7.79 -2.38 -0.02 -0.06 16 35 H 0.07 -0.09 7.48 -2.39 -0.02 -0.11 16 36 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 37 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 38 H 0.07 0.05 7.79 -2.38 -0.02 0.03 16 39 H 0.08 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.06 0.07 7.48 -2.39 -0.02 0.05 16 41 H 0.07 0.07 7.21 -2.39 -0.02 0.05 16 42 H 0.07 0.18 6.92 -2.39 -0.02 0.16 16 43 H 0.18 0.16 7.48 -2.91 -0.02 0.14 16 44 H 0.19 -0.67 8.06 -2.91 -0.02 -0.69 16 45 H 0.17 -0.26 8.06 -2.91 -0.02 -0.28 16 46 H 0.17 -0.27 8.06 -2.91 -0.02 -0.29 16 47 H 0.15 -0.76 7.96 -2.39 -0.02 -0.78 16 48 H 0.39 -3.02 8.70 -74.06 -0.64 -3.67 16 Total: 0.00 -9.80 405.36 5.26 -4.54 By element: Atomic # 1 Polarization: -6.74 SS G_CDS: 1.05 Total: -5.69 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.15 Total: 5.67 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -3.08 Total: -4.19 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.46 Total: 0.98 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.32 Total: -1.32 kcal Total: -9.80 5.26 -4.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12175800_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.081 kcal (2) G-P(sol) polarization free energy of solvation -9.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds