Wall clock time and date at job start Mon Mar 8 2021 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47314 * 239.99883 * 2 1 3 5 5 O 1.45201 * 109.47346 * 120.00147 * 2 1 3 6 6 C 1.34638 * 116.99819 * 59.99666 * 5 2 1 7 7 O 1.21513 * 120.00208 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99834 * 179.72501 * 6 5 2 9 9 C 1.46499 * 120.00199 * 180.27541 * 8 6 5 10 10 H 1.08998 * 112.84467 * 23.80487 * 9 8 6 11 11 C 1.53781 * 113.61433 * 155.00089 * 9 8 6 12 12 C 1.53781 * 87.07867 * 89.12078 * 11 9 8 13 13 H 1.08996 * 113.61706 * 270.88237 * 12 11 9 14 14 C 1.50701 * 113.61551 * 139.98153 * 12 11 9 15 15 C 1.37992 * 119.94211 * 119.99951 * 14 12 11 16 16 C 1.39353 * 119.87917 * 179.97438 * 15 14 12 17 17 C 1.48397 * 120.12182 * 180.02562 * 16 15 14 18 18 C 1.39334 * 120.11995 * 359.72141 * 17 16 15 19 19 C 1.38022 * 119.87841 * 179.76774 * 18 17 16 20 20 C 1.38319 * 120.11762 * 0.50962 * 19 18 17 21 21 C 1.50697 * 119.87828 * 179.72160 * 20 19 18 22 22 O 1.42893 * 109.47433 * 245.02134 * 21 20 19 23 23 Si 1.86309 * 109.47097 * 5.02123 * 21 20 19 24 24 C 1.38322 * 120.24659 * 359.73820 * 20 19 18 25 25 C 1.38023 * 120.12015 * 0.02562 * 24 20 19 26 26 C 1.39314 * 119.76152 * 359.97438 * 16 15 14 27 27 C 1.38046 * 119.87395 * 0.02562 * 26 16 15 28 28 C 1.38297 * 120.12144 * 359.74894 * 27 26 16 29 29 C 1.53779 * 87.08432 * 25.43214 * 12 11 9 30 30 H 1.08997 * 109.47392 * 299.99655 * 1 2 3 31 31 H 1.08999 * 109.47056 * 59.99890 * 1 2 3 32 32 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47042 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47303 * 299.99959 * 3 2 1 35 35 H 1.09003 * 109.46990 * 60.00348 * 3 2 1 36 36 H 1.08999 * 109.47400 * 300.00352 * 4 2 1 37 37 H 1.09013 * 109.46945 * 59.99983 * 4 2 1 38 38 H 1.08997 * 109.47343 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99727 * 0.28438 * 8 6 5 40 40 H 1.09007 * 113.61281 * 203.66562 * 11 9 8 41 41 H 1.09001 * 113.61388 * 334.48620 * 11 9 8 42 42 H 1.08002 * 120.06042 * 359.95050 * 15 14 12 43 43 H 1.08008 * 120.05996 * 359.97438 * 18 17 16 44 44 H 1.08000 * 119.94152 * 180.22893 * 19 18 17 45 45 H 1.09003 * 109.47552 * 125.01228 * 21 20 19 46 46 H 0.96704 * 113.99707 * 59.99654 * 22 21 20 47 47 H 1.48503 * 109.99743 * 58.67848 * 23 21 20 48 48 H 1.48494 * 109.99999 * 180.02562 * 23 21 20 49 49 H 1.07998 * 119.93740 * 179.97438 * 24 20 19 50 50 H 1.07999 * 120.05926 * 179.97438 * 25 24 20 51 51 H 1.08002 * 120.06379 * 179.97438 * 26 16 15 52 52 H 1.07998 * 119.93822 * 179.97438 * 27 26 16 53 53 H 1.07996 * 119.88055 * 180.27070 * 28 27 26 54 54 H 1.09000 * 113.61513 * 220.01986 * 29 12 11 55 55 H 1.08999 * 113.61644 * 89.11386 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0722 -2.6672 2.4140 9 6 1.6835 -4.0703 2.5772 10 1 1.4308 -4.5520 1.6327 11 6 2.6614 -4.8838 3.4414 12 6 1.8217 -4.4546 4.6561 13 1 2.1486 -3.5158 5.1032 14 6 1.6249 -5.5505 5.6717 15 6 2.0746 -5.3799 6.9650 16 6 1.8914 -6.3940 7.9031 17 6 2.3724 -6.2160 9.2957 18 6 3.0140 -5.0367 9.6685 19 6 3.4551 -4.8745 10.9662 20 6 3.2706 -5.8843 11.8933 21 6 3.7599 -5.7040 13.3071 22 8 4.7986 -6.6479 13.5758 23 14 4.4215 -3.9754 13.5196 24 6 2.6389 -7.0592 11.5273 25 6 2.1895 -7.2301 10.2336 26 6 1.2542 -7.5751 7.5293 27 6 0.8083 -7.7351 6.2327 28 6 0.9885 -6.7236 5.3069 29 6 0.6404 -4.2958 3.6845 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2494 39 1 2.6318 -2.2383 3.0802 40 1 2.6295 -5.9556 3.2454 41 1 3.6756 -4.4844 3.4468 42 1 2.5680 -4.4623 7.2496 43 1 3.1629 -4.2495 8.9441 44 1 3.9492 -3.9593 11.2572 45 1 2.9345 -5.8648 14.0007 46 1 5.5670 -6.5630 12.9948 47 1 3.3596 -2.9838 13.2121 48 1 4.9078 -3.7850 14.9097 49 1 2.4978 -7.8446 12.2551 50 1 1.6968 -8.1480 9.9488 51 1 1.1100 -8.3643 8.2523 52 1 0.3145 -8.6504 5.9416 53 1 0.6342 -6.8512 4.2948 54 1 0.0228 -3.4208 3.8872 55 1 0.0561 -5.2068 3.5548 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12296696_14315990.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:50:04 Heat of formation + Delta-G solvation = -31.048273 kcal Electronic energy + Delta-G solvation = -33823.316116 eV Core-core repulsion = 29371.577720 eV Total energy + Delta-G solvation = -4451.738396 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00460 -41.25498 -40.53400 -39.23251 -37.89728 -37.44587 -35.38932 -34.38232 -33.56879 -32.43851 -31.51803 -30.47218 -28.37710 -28.30921 -26.78875 -26.55692 -26.43835 -24.27273 -24.01290 -23.20106 -22.24765 -21.59278 -21.14801 -19.94657 -19.35111 -18.67188 -17.93081 -17.58189 -17.20449 -16.92541 -16.84765 -16.52629 -16.36896 -16.04080 -15.74746 -15.54761 -15.42486 -15.25784 -15.02012 -14.83626 -14.65416 -14.48852 -14.29689 -14.21980 -14.11440 -13.81146 -13.51323 -13.36910 -13.22997 -13.19797 -12.97160 -12.92809 -12.87462 -12.86350 -12.50287 -12.35846 -12.33755 -12.21875 -12.01868 -11.83123 -11.73481 -11.52073 -11.40653 -11.21090 -11.10874 -10.60794 -10.39132 -10.18850 -9.95900 -9.64257 -8.94289 -5.01763 -0.33760 0.40106 0.45721 0.88603 1.12555 1.30221 1.62656 1.72171 1.95155 2.56493 3.04258 3.10642 3.44312 3.48619 3.55658 3.68453 3.71787 3.73413 3.73953 3.79180 3.92980 3.93577 3.95090 3.97662 4.07819 4.23920 4.25356 4.36881 4.42127 4.43330 4.46260 4.50452 4.59878 4.60401 4.68902 4.75757 4.75931 4.78755 4.80097 4.82748 4.86982 4.89819 4.96539 4.98074 5.02825 5.07546 5.09163 5.16121 5.17613 5.26261 5.30326 5.31680 5.33202 5.46755 5.49115 5.58394 5.59574 5.73658 5.76756 5.94253 6.07579 6.38160 6.75051 7.32932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.682 5.682 9 C 0.132 3.868 10 H 0.093 0.907 11 C -0.122 4.122 12 C -0.065 4.065 13 H 0.110 0.890 14 C -0.071 4.071 15 C -0.112 4.112 16 C -0.060 4.060 17 C -0.050 4.050 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.076 4.076 22 O -0.556 6.556 23 Si 0.777 3.223 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.143 4.143 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.104 0.896 46 H 0.395 0.605 47 H -0.286 1.286 48 H -0.300 1.300 49 H 0.127 0.873 50 H 0.135 0.865 51 H 0.131 0.869 52 H 0.138 0.862 53 H 0.137 0.863 54 H 0.066 0.934 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 2.084 -1.729 4.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.028 3.972 10 H 0.111 0.889 11 C -0.160 4.160 12 C -0.084 4.084 13 H 0.128 0.872 14 C -0.071 4.071 15 C -0.130 4.130 16 C -0.060 4.060 17 C -0.050 4.050 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.185 4.185 22 O -0.364 6.364 23 Si 0.683 3.317 24 C -0.120 4.120 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.137 4.137 29 C -0.182 4.182 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.121 0.879 46 H 0.245 0.755 47 H -0.213 1.213 48 H -0.229 1.229 49 H 0.145 0.855 50 H 0.153 0.847 51 H 0.148 0.852 52 H 0.156 0.844 53 H 0.155 0.845 54 H 0.084 0.916 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.443 2.464 -1.327 3.715 hybrid contribution -0.647 -0.548 0.519 0.994 sum 1.796 1.916 -0.808 2.748 Atomic orbital electron populations 1.22472 0.94097 1.03679 1.03485 1.22351 0.94418 0.92596 0.81518 1.21891 1.02499 0.90846 1.04232 1.22475 1.01676 1.02244 0.97334 1.86310 1.71504 1.23241 1.47272 1.18325 0.78606 0.80791 0.82356 1.90908 1.42237 1.70924 1.44343 1.44360 1.54795 1.11748 1.23273 1.21861 0.97032 0.79096 0.99242 0.88872 1.23401 0.98635 1.01131 0.92859 1.21592 0.97159 0.97064 0.92553 0.87212 1.19728 0.97909 0.95424 0.94048 1.21317 1.00154 0.99033 0.92458 1.18885 0.99565 0.95175 0.92328 1.18998 0.98560 0.94906 0.92527 1.21446 0.97562 0.97241 0.96597 1.21144 1.00259 0.98628 0.93174 1.20491 1.00460 0.95307 0.96367 1.25205 0.93367 1.05874 0.94103 1.86469 1.30112 1.58119 1.61720 0.93741 0.84890 0.72090 0.80961 1.21069 0.97283 0.97400 0.96256 1.21449 1.00046 0.99278 0.92987 1.21443 0.98571 0.97249 0.97117 1.21331 0.99787 0.99836 0.93123 1.21322 0.98837 0.93157 1.00417 1.23601 0.96595 1.03067 0.94893 0.91977 0.89501 0.91799 0.91108 0.88357 0.91182 0.91780 0.89507 0.91872 0.74564 0.87527 0.89296 0.84294 0.83407 0.83450 0.87872 0.75501 1.21269 1.22871 0.85543 0.84711 0.85156 0.84444 0.84507 0.91570 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 2 C 0.13 0.32 1.13 -10.80 -0.01 0.31 16 3 C -0.14 0.35 8.85 71.98 0.64 0.98 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.78 9.94 -55.48 -0.55 -2.33 16 6 C 0.65 3.87 8.06 129.79 1.05 4.92 16 7 O -0.59 -6.86 11.48 19.80 0.23 -6.63 16 8 N -0.68 0.44 5.27 -567.60 -2.99 -2.55 16 9 C 0.13 -0.28 4.32 45.52 0.20 -0.08 16 10 H 0.09 0.15 7.46 -2.39 -0.02 0.13 16 11 C -0.12 0.75 7.29 31.12 0.23 0.97 16 12 C -0.07 0.35 3.85 -11.01 -0.04 0.31 16 13 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 14 C -0.07 0.15 5.28 -19.90 -0.11 0.05 16 15 C -0.11 0.11 9.09 22.48 0.20 0.32 16 16 C -0.06 -0.08 5.88 -20.04 -0.12 -0.20 16 17 C -0.05 -0.08 5.88 -20.04 -0.12 -0.20 16 18 C -0.11 0.11 9.43 22.48 0.21 0.32 16 19 C -0.11 0.18 8.65 22.24 0.19 0.38 16 20 C -0.13 -0.08 5.36 -19.83 -0.11 -0.18 16 21 C -0.08 0.00 2.80 71.24 0.20 0.20 16 22 O -0.56 -0.45 12.83 -148.98 -1.91 -2.36 16 23 Si 0.78 -1.65 29.79 68.60 2.04 0.40 16 24 C -0.10 -0.21 9.67 22.24 0.21 0.00 16 25 C -0.12 -0.21 9.43 22.48 0.21 0.00 16 26 C -0.13 -0.10 9.43 22.48 0.21 0.11 16 27 C -0.12 0.09 10.03 22.24 0.22 0.31 16 28 C -0.12 0.22 8.62 22.31 0.19 0.41 16 29 C -0.14 0.45 7.25 31.12 0.23 0.68 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 37 H 0.09 -0.05 8.14 -2.38 -0.02 -0.06 16 38 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.42 -2.21 8.81 -92.71 -0.82 -3.03 16 40 H 0.11 -0.70 7.73 -2.38 -0.02 -0.71 16 41 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.14 -0.68 6.20 -2.91 -0.02 -0.69 16 43 H 0.15 -0.82 6.21 -2.91 -0.02 -0.84 16 44 H 0.15 -0.94 4.89 -2.91 -0.01 -0.96 16 45 H 0.10 0.16 7.96 -2.39 -0.02 0.14 16 46 H 0.40 -2.88 8.70 -74.05 -0.64 -3.53 16 47 H -0.29 -0.73 7.11 99.48 0.71 -0.03 16 48 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 49 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 50 H 0.14 -0.13 6.21 -2.91 -0.02 -0.14 16 51 H 0.13 -0.20 6.21 -2.91 -0.02 -0.22 16 52 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 53 H 0.14 -0.68 6.63 -2.91 -0.02 -0.70 16 54 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 55 H 0.10 -0.40 6.29 -2.39 -0.02 -0.42 16 Total: 0.00 -18.78 433.11 1.22 -17.56 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: -0.49 Total: -13.84 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 4.90 Total: 9.77 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.99 Total: -2.55 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -2.24 Total: -11.32 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.04 Total: 0.40 kcal Total: -18.78 1.22 -17.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_14315990.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.493 kcal (2) G-P(sol) polarization free energy of solvation -18.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds