Wall clock time and date at job start Mon Mar 8 2021 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40071 * 126.13959 * 2 1 4 4 C 1.30896 * 108.50832 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.70217 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47136 * 180.02562 * 5 4 3 7 7 Si 1.63099 * 114.00067 * 179.97438 * 6 5 4 8 8 C 1.86306 * 109.46981 * 299.99876 * 7 6 5 9 9 C 1.86294 * 109.47132 * 59.99850 * 7 6 5 10 10 C 1.86299 * 109.47105 * 180.02562 * 7 6 5 11 11 C 1.52998 * 109.47275 * 59.99734 * 10 7 6 12 12 C 1.53003 * 109.46938 * 180.02562 * 10 7 6 13 13 C 1.52999 * 109.46905 * 299.99942 * 10 7 6 14 14 C 1.39499 * 108.59194 * 0.22014 * 4 3 2 15 15 C 1.36290 * 126.13857 * 179.97438 * 2 1 3 16 16 C 1.47980 * 126.33939 * 359.97261 * 15 2 1 17 17 C 1.39495 * 120.13717 * 200.45411 * 16 15 2 18 18 C 1.37985 * 119.86086 * 179.76349 * 17 16 15 19 19 C 1.38347 * 120.13606 * 0.51176 * 18 17 16 20 20 C 1.50699 * 119.86037 * 179.76263 * 19 18 17 21 21 O 1.42896 * 109.46884 * 119.98027 * 20 19 18 22 22 Si 1.86298 * 109.47231 * 359.97438 * 20 19 18 23 23 H 1.48507 * 109.47057 * 299.99890 * 22 20 19 24 24 H 1.48494 * 109.47226 * 59.99934 * 22 20 19 25 25 H 1.48497 * 109.46962 * 180.02562 * 22 20 19 26 26 C 1.38349 * 120.27560 * 359.73827 * 19 18 17 27 27 C 1.37974 * 120.13921 * 0.02562 * 26 19 18 28 28 H 1.09003 * 109.47127 * 95.95871 * 1 2 3 29 29 H 1.08997 * 109.47394 * 215.95906 * 1 2 3 30 30 H 1.09005 * 109.47122 * 335.96136 * 1 2 3 31 31 H 1.08997 * 109.47280 * 60.01994 * 5 4 3 32 32 H 1.09004 * 109.46901 * 300.02021 * 5 4 3 33 33 H 1.08999 * 109.47123 * 59.99945 * 8 7 6 34 34 H 1.09000 * 109.46753 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.47180 * 300.00029 * 8 7 6 36 36 H 1.08995 * 109.47345 * 59.99975 * 9 7 6 37 37 H 1.09000 * 109.47196 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47092 * 300.00129 * 9 7 6 39 39 H 1.09002 * 109.46969 * 60.00493 * 11 10 7 40 40 H 1.08999 * 109.47028 * 179.97438 * 11 10 7 41 41 H 1.09000 * 109.47335 * 300.00403 * 11 10 7 42 42 H 1.08991 * 109.46996 * 59.99736 * 12 10 7 43 43 H 1.09008 * 109.46481 * 180.02562 * 12 10 7 44 44 H 1.09002 * 109.46700 * 299.99128 * 12 10 7 45 45 H 1.08994 * 109.47591 * 60.00270 * 13 10 7 46 46 H 1.08999 * 109.47019 * 180.02562 * 13 10 7 47 47 H 1.09003 * 109.47073 * 300.00018 * 13 10 7 48 48 H 1.08001 * 126.06767 * 179.77178 * 14 4 3 49 49 H 1.07999 * 120.07126 * 0.02562 * 17 16 15 50 50 H 1.07998 * 119.93324 * 180.27001 * 18 17 16 51 51 H 1.09000 * 109.46927 * 239.97261 * 20 19 18 52 52 H 0.96702 * 113.99967 * 180.02562 * 21 20 19 53 53 H 1.08007 * 119.92501 * 179.97438 * 26 19 18 54 54 H 1.08006 * 120.06912 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2911 1.1312 0.0000 4 6 3.5386 0.7347 0.0006 5 6 4.7474 1.6346 0.0002 6 8 5.9340 0.8384 0.0004 7 14 7.3150 1.7060 -0.0006 8 6 7.3733 2.7790 -1.5226 9 6 7.3741 2.7811 1.5197 10 6 8.7752 0.5491 -0.0010 11 6 8.7264 -0.3334 -1.2499 12 6 10.0708 1.3630 -0.0013 13 6 8.7277 -0.3325 1.2486 14 6 3.5620 -0.6601 -0.0041 15 6 2.2688 -1.1007 0.0005 16 6 1.8232 -2.5118 0.0017 17 6 2.6904 -3.5197 0.4237 18 6 2.2674 -4.8331 0.4271 19 6 0.9898 -5.1524 0.0032 20 6 0.5361 -6.5895 0.0044 21 8 -0.6013 -6.7291 0.8581 22 14 1.9161 -7.6759 0.6257 23 1 3.0981 -7.5307 -0.2617 24 1 2.2814 -7.2710 2.0068 25 1 1.4692 -9.0920 0.6263 26 6 0.1268 -4.1579 -0.4214 27 6 0.5363 -2.8403 -0.4249 28 1 -0.3633 -0.1067 -1.0221 29 1 -0.3634 -0.8318 0.6034 30 1 -0.3634 0.9386 0.4186 31 1 4.7320 2.2641 0.8899 32 1 4.7319 2.2634 -0.8901 33 1 6.5189 3.4559 -1.5228 34 1 8.2965 3.3584 -1.5234 35 1 7.3387 2.1499 -2.4121 36 1 7.3401 2.1534 2.4101 37 1 8.2973 3.3606 1.5193 38 1 6.5198 3.4580 1.5195 39 1 8.7603 0.2946 -2.1401 40 1 9.5809 -1.0100 -1.2503 41 1 7.8034 -0.9132 -1.2492 42 1 10.1053 1.9913 0.8886 43 1 10.9251 0.6859 -0.0020 44 1 10.1049 1.9913 -0.8914 45 1 7.8048 -0.9124 1.2493 46 1 9.5822 -1.0091 1.2486 47 1 8.7624 0.2962 2.1383 48 1 4.4455 -1.2812 -0.0084 49 1 3.6894 -3.2721 0.7510 50 1 2.9364 -5.6138 0.7577 51 1 0.2680 -6.8867 -1.0094 52 1 -0.9476 -7.6306 0.9076 53 1 -0.8692 -4.4137 -0.7516 54 1 -0.1385 -2.0648 -0.7562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12296696_15493832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:53:48 Heat of formation + Delta-G solvation = -19.079247 kcal Electronic energy + Delta-G solvation = -30374.758816 eV Core-core repulsion = 26436.805036 eV Total energy + Delta-G solvation = -3937.953780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.194 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.33184 -40.33681 -38.06645 -37.56065 -36.79144 -34.65150 -33.52834 -32.07284 -30.52406 -29.47137 -29.02354 -28.93939 -27.79446 -27.33575 -26.75956 -25.97975 -23.95072 -22.83640 -21.22811 -20.78960 -20.31917 -18.46073 -18.37262 -17.60579 -17.00186 -16.85636 -16.59000 -16.28200 -16.01588 -15.90431 -15.56088 -15.41506 -14.99557 -14.81294 -14.68685 -14.58572 -14.40887 -14.26910 -13.95467 -13.87055 -13.70338 -13.63084 -13.39560 -13.33605 -13.16611 -13.14539 -13.02469 -12.90778 -12.87191 -12.36138 -12.32111 -12.17706 -12.00957 -11.91927 -11.74737 -11.73560 -11.61782 -11.57097 -11.38055 -10.81648 -10.36430 -10.25577 -10.02745 -10.02695 -9.71972 -9.13856 -0.28921 0.32909 0.99259 1.17961 1.24991 1.46413 1.52030 1.65918 1.74926 1.82243 1.92396 2.15187 2.48561 2.69539 3.28473 3.45420 3.53109 3.74949 3.86597 3.96360 4.03507 4.16315 4.16896 4.22646 4.28966 4.29452 4.39264 4.43172 4.43584 4.49998 4.53469 4.62570 4.66064 4.77720 4.78056 4.81658 4.82558 4.86362 4.86819 4.88040 4.96712 5.00965 5.04982 5.13782 5.14251 5.21408 5.23378 5.32841 5.39912 5.43417 5.45918 5.47070 5.51728 5.59971 5.65689 5.68195 5.82594 5.98589 6.63723 6.82194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.373 5.373 3 N -0.314 5.314 4 C 0.059 3.941 5 C 0.166 3.834 6 O -0.631 6.631 7 Si 1.323 2.677 8 C -0.520 4.520 9 C -0.520 4.520 10 C -0.378 4.378 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.237 4.237 15 C 0.111 3.889 16 C -0.040 4.040 17 C -0.090 4.090 18 C -0.131 4.131 19 C -0.077 4.077 20 C -0.081 4.081 21 O -0.561 6.561 22 Si 0.972 3.028 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.091 4.091 27 C -0.118 4.118 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.162 0.838 49 H 0.143 0.857 50 H 0.133 0.867 51 H 0.100 0.900 52 H 0.399 0.601 53 H 0.146 0.854 54 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -2.434 -1.255 3.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.156 5.156 3 N -0.139 5.139 4 C -0.105 4.105 5 C 0.088 3.912 6 O -0.589 6.589 7 Si 1.453 2.547 8 C -0.621 4.621 9 C -0.621 4.621 10 C -0.421 4.421 11 C -0.194 4.194 12 C -0.198 4.198 13 C -0.195 4.195 14 C -0.265 4.265 15 C -0.015 4.015 16 C -0.042 4.042 17 C -0.109 4.109 18 C -0.148 4.148 19 C -0.078 4.078 20 C -0.191 4.191 21 O -0.370 6.370 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.108 4.108 27 C -0.136 4.136 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.179 0.821 49 H 0.161 0.839 50 H 0.151 0.849 51 H 0.118 0.882 52 H 0.250 0.750 53 H 0.163 0.837 54 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.904 -1.565 -0.879 2.617 hybrid contribution 0.502 -0.611 -0.150 0.805 sum -1.402 -2.176 -1.029 2.785 Atomic orbital electron populations 1.22392 0.72525 1.05948 1.04668 1.48925 1.07319 1.02321 1.57035 1.77169 1.01450 1.08492 1.26751 1.22333 0.93022 0.95060 1.00084 1.20099 0.79426 0.88652 1.02981 1.85232 1.27755 1.54165 1.91738 0.76117 0.55239 0.58767 0.64577 1.27116 1.05065 1.11605 1.18352 1.27115 1.05066 1.11636 1.18328 1.25859 1.11714 1.06662 0.97863 1.21546 1.01755 0.99467 0.96673 1.21608 0.96182 0.99727 1.02315 1.21547 1.01772 0.99476 0.96659 1.21385 0.96120 0.94455 1.14589 1.19828 0.90984 0.87856 1.02883 1.18115 0.95259 0.88643 1.02174 1.21245 1.00073 0.91485 0.98066 1.21102 0.96297 0.96853 1.00582 1.19718 0.94021 0.95301 0.98753 1.24731 0.97618 0.97934 0.98812 1.86449 1.46417 1.36191 1.67972 0.85376 0.77349 0.77803 0.79824 1.18118 1.19635 1.18004 1.21106 1.00140 0.91460 0.98142 1.21722 0.94995 0.97715 0.99210 0.88743 0.87884 0.88241 0.89364 0.89365 0.91063 0.90186 0.91144 0.91143 0.90187 0.91065 0.92179 0.93306 0.92393 0.91787 0.93089 0.91796 0.92361 0.93309 0.92179 0.82053 0.83883 0.84930 0.88193 0.75041 0.83671 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.13 9.64 127.77 1.23 1.10 16 2 N -0.37 -2.50 4.05 -356.89 -1.45 -3.94 16 3 N -0.31 -3.15 12.56 -47.58 -0.60 -3.75 16 4 C 0.06 0.48 7.16 43.00 0.31 0.79 16 5 C 0.17 0.41 5.74 71.24 0.41 0.82 16 6 O -0.63 -1.10 7.87 -148.98 -1.17 -2.27 16 7 Si 1.32 -2.64 8.45 68.60 0.58 -2.06 16 8 C -0.52 0.74 8.50 113.37 0.96 1.71 16 9 C -0.52 0.73 8.50 113.37 0.96 1.70 16 10 C -0.38 0.20 0.53 -10.79 -0.01 0.20 16 11 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 12 C -0.14 0.19 7.85 71.98 0.56 0.76 16 13 C -0.14 -0.06 7.84 71.98 0.56 0.51 16 14 C -0.24 -1.83 9.51 22.20 0.21 -1.62 16 15 C 0.11 0.77 6.74 40.66 0.27 1.04 16 16 C -0.04 -0.17 5.84 -20.09 -0.12 -0.28 16 17 C -0.09 -0.28 9.57 22.51 0.22 -0.06 16 18 C -0.13 -0.29 8.65 22.24 0.19 -0.10 16 19 C -0.08 -0.12 5.43 -19.81 -0.11 -0.22 16 20 C -0.08 0.21 2.81 71.24 0.20 0.41 16 21 O -0.56 1.04 12.74 -148.98 -1.90 -0.86 16 22 Si 0.97 -1.99 25.06 68.60 1.72 -0.27 16 23 H -0.26 0.21 7.11 99.48 0.71 0.91 16 24 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 25 H -0.26 0.58 7.11 99.48 0.71 1.29 16 26 C -0.09 -0.06 9.59 22.23 0.21 0.15 16 27 C -0.12 -0.13 8.60 22.51 0.19 0.07 16 28 H 0.09 -0.48 7.64 -2.39 -0.02 -0.49 16 29 H 0.10 -0.44 6.55 -2.39 -0.02 -0.45 16 30 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.09 -0.04 7.21 -2.39 -0.02 -0.06 16 32 H 0.09 -0.05 7.21 -2.38 -0.02 -0.06 16 33 H 0.07 -0.14 7.48 -2.39 -0.02 -0.16 16 34 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 35 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 36 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 37 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 38 H 0.07 -0.14 7.48 -2.39 -0.02 -0.15 16 39 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 40 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.06 0.06 7.97 -2.39 -0.02 0.04 16 42 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 43 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 45 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 46 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.06 -0.05 7.80 -2.39 -0.02 -0.07 16 48 H 0.16 0.87 7.51 -2.91 -0.02 0.85 16 49 H 0.14 0.07 7.40 -2.91 -0.02 0.05 16 50 H 0.13 -0.03 4.86 -2.91 -0.01 -0.04 16 51 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 52 H 0.40 -4.25 8.74 -74.06 -0.65 -4.89 16 53 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 54 H 0.15 -0.45 5.00 -2.91 -0.01 -0.47 16 Total: 0.00 -16.55 426.36 5.01 -11.54 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: 0.99 Total: -5.85 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.84 Total: 7.46 kcal Atomic # 7 Polarization: -5.65 SS G_CDS: -2.04 Total: -7.69 kcal Atomic # 8 Polarization: -0.06 SS G_CDS: -3.07 Total: -3.13 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.30 Total: -2.33 kcal Total: -16.55 5.01 -11.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_15493832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.538 kcal (2) G-P(sol) polarization free energy of solvation -16.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds