Wall clock time and date at job start Mon Mar 8 2021 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.53006 * 109.46815 * 240.00380 * 2 1 3 5 5 Si 1.86298 * 109.47266 * 120.00245 * 2 1 3 6 6 C 1.86292 * 109.47201 * 299.99784 * 5 2 1 7 7 C 1.86305 * 109.46819 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47083 * 60.00149 * 5 2 1 9 9 C 1.42899 * 113.99814 * 179.97438 * 8 5 2 10 10 C 1.50707 * 109.46775 * 179.97438 * 9 8 5 11 11 C 1.33048 * 122.54322 * 0.02562 * 10 9 8 12 12 S 1.75810 * 109.93280 * 179.97438 * 11 10 9 13 13 C 1.75861 * 91.14856 * 359.83648 * 12 11 10 14 14 C 1.34571 * 109.54041 * 0.28676 * 13 12 11 15 15 C 1.48371 * 122.76744 * 179.97438 * 14 13 12 16 16 C 1.39354 * 120.11632 * 129.42976 * 15 14 13 17 17 C 1.38019 * 119.87064 * 180.29774 * 16 15 14 18 18 C 1.38328 * 120.12256 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.87284 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.46934 * 119.98288 * 19 18 17 21 21 Si 1.86298 * 109.47303 * 359.97438 * 19 18 17 22 22 H 1.48503 * 109.47147 * 60.00093 * 21 19 18 23 23 H 1.48502 * 109.46991 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47291 * 299.99988 * 21 19 18 25 25 C 1.38320 * 120.24999 * 0.02562 * 18 17 16 26 26 C 1.38014 * 120.12179 * 0.02562 * 25 18 17 27 27 H 1.09003 * 109.46816 * 299.99810 * 1 2 3 28 28 H 1.09001 * 109.47374 * 59.99627 * 1 2 3 29 29 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46715 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47377 * 300.00371 * 3 2 1 32 32 H 1.08996 * 109.46913 * 60.00732 * 3 2 1 33 33 H 1.09000 * 109.47237 * 299.99880 * 4 2 1 34 34 H 1.09001 * 109.47155 * 59.99859 * 4 2 1 35 35 H 1.08996 * 109.46840 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47042 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.47330 * 300.00002 * 6 5 2 38 38 H 1.08999 * 109.47204 * 60.00609 * 6 5 2 39 39 H 1.09003 * 109.47200 * 299.99907 * 7 5 2 40 40 H 1.08994 * 109.46827 * 60.00083 * 7 5 2 41 41 H 1.09001 * 109.46927 * 180.02562 * 7 5 2 42 42 H 1.08988 * 109.47258 * 59.99996 * 9 8 5 43 43 H 1.09004 * 109.46986 * 299.99372 * 9 8 5 44 44 H 1.08004 * 125.03472 * 0.02562 * 11 10 9 45 45 H 1.08002 * 125.22857 * 180.17756 * 13 12 11 46 46 H 1.07995 * 120.07028 * 0.25323 * 16 15 14 47 47 H 1.08000 * 119.93722 * 180.02562 * 17 16 15 48 48 H 1.09001 * 109.46891 * 239.97690 * 19 18 17 49 49 H 0.96701 * 113.99873 * 299.99136 * 20 19 18 50 50 H 1.07993 * 119.94182 * 179.97438 * 25 18 17 51 51 H 1.08005 * 120.06329 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6074 -2.4161 1.5210 9 6 2.0296 -3.1818 2.6512 10 6 1.4722 -4.5782 2.5484 11 6 0.7098 -4.9714 1.5314 12 16 0.2461 -6.6537 1.7453 13 6 1.1445 -6.7463 3.2543 14 6 1.7168 -5.5557 3.5112 15 6 2.5458 -5.3066 4.7162 16 6 3.8085 -4.7307 4.5894 17 6 4.5779 -4.5068 5.7131 18 6 4.0976 -4.8524 6.9634 19 6 4.9422 -4.6049 8.1867 20 8 4.2501 -3.7232 9.0729 21 14 6.5593 -3.8319 7.6788 22 1 6.2970 -2.5430 6.9894 23 1 7.3913 -3.5875 8.8844 24 1 7.2785 -4.7484 6.7579 25 6 2.8450 -5.4243 7.0951 26 6 2.0675 -5.6537 5.9782 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8939 -0.5138 3.9321 37 1 1.8935 1.0275 3.0423 38 1 0.4402 -0.0002 3.0423 39 1 4.3771 -1.3929 0.6305 40 1 4.3777 0.1486 1.5203 41 1 4.3775 -1.3931 2.4103 42 1 1.6656 -2.7121 3.5648 43 1 3.1186 -3.2257 2.6741 44 1 0.4195 -4.3495 0.6975 45 1 1.2232 -7.6233 3.8797 46 1 4.1846 -4.4608 3.6137 47 1 5.5564 -4.0602 5.6161 48 1 5.1348 -5.5510 8.6927 49 1 4.0453 -2.8599 8.6883 50 1 2.4752 -5.6926 8.0736 51 1 1.0894 -6.0999 6.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12296696_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:06:19 Heat of formation + Delta-G solvation = -78.232595 kcal Electronic energy + Delta-G solvation = -28731.178493 eV Core-core repulsion = 25037.975178 eV Total energy + Delta-G solvation = -3693.203315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.02849 -39.46178 -37.73502 -37.01035 -36.87320 -32.93643 -32.09124 -30.58491 -29.51029 -29.13746 -28.02813 -27.90325 -27.42881 -26.37973 -23.97445 -23.62269 -22.06522 -20.47640 -19.61989 -18.89395 -18.49212 -17.42594 -16.93639 -16.89502 -16.49189 -16.21596 -15.98083 -15.87099 -15.68013 -15.07824 -14.91658 -14.85820 -14.73445 -14.32461 -14.19342 -14.05137 -13.88266 -13.68189 -13.65136 -13.42646 -13.38179 -13.26890 -13.11770 -12.97751 -12.97559 -12.80183 -12.46107 -12.36472 -12.26935 -12.10112 -11.99343 -11.82906 -11.68835 -11.67330 -11.56132 -11.36440 -10.50364 -10.45487 -10.12641 -10.11982 -9.97419 -9.49136 -9.03771 -0.16224 0.31619 0.36815 0.73119 1.06839 1.11217 1.36763 1.38948 1.46806 1.66013 1.69025 1.87558 2.00211 2.37635 2.69630 3.41402 3.60996 3.75125 3.88430 3.91000 3.97259 4.07318 4.07347 4.17028 4.29011 4.34575 4.38912 4.42280 4.51589 4.53751 4.61692 4.62847 4.68270 4.68978 4.70784 4.76992 4.81132 4.81325 4.90473 4.95371 4.99275 5.05863 5.06311 5.11640 5.18888 5.22359 5.30155 5.37365 5.41717 5.44227 5.47370 5.50444 5.53216 5.55566 5.67555 5.90668 6.50260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.147 3.853 10 C -0.105 4.105 11 C -0.177 4.177 12 S 0.108 5.892 13 C -0.201 4.201 14 C -0.063 4.063 15 C -0.021 4.021 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.080 4.080 20 O -0.538 6.538 21 Si 0.946 3.054 22 H -0.251 1.251 23 H -0.254 1.254 24 H -0.250 1.250 25 C -0.086 4.086 26 C -0.104 4.104 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.177 0.823 45 H 0.167 0.833 46 H 0.128 0.872 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.377 0.623 50 H 0.131 0.869 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 0.489 -0.201 0.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.069 3.931 10 C -0.116 4.116 11 C -0.313 4.313 12 S 0.374 5.626 13 C -0.337 4.337 14 C -0.076 4.076 15 C -0.024 4.024 16 C -0.125 4.125 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.191 4.191 20 O -0.343 6.343 21 Si 0.769 3.231 22 H -0.174 1.174 23 H -0.178 1.178 24 H -0.174 1.174 25 C -0.104 4.104 26 C -0.122 4.122 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.194 0.806 45 H 0.185 0.815 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.224 0.776 50 H 0.149 0.851 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.296 -0.904 -1.078 1.438 hybrid contribution 0.569 1.596 0.569 1.787 sum 0.865 0.692 -0.509 1.219 Atomic orbital electron populations 1.21514 0.93786 1.01989 1.01833 1.25769 1.00688 1.02630 1.12618 1.21558 1.00784 0.94894 1.02188 1.21513 1.00628 1.00202 0.96770 0.76714 0.63085 0.53306 0.65084 1.27033 1.07081 1.09486 1.17752 1.27037 1.25018 1.04814 1.04511 1.85292 1.79374 1.46020 1.47552 1.20578 0.97517 0.87932 0.87038 1.18684 1.01913 0.95952 0.95068 1.25365 1.04195 0.97774 1.03941 1.84454 1.50527 1.08834 1.18737 1.25728 1.04652 1.01481 1.01809 1.17503 1.01271 0.92951 0.95830 1.18460 0.93466 0.98830 0.91629 1.21179 0.93537 0.99145 0.98662 1.20975 0.99738 1.00877 0.92398 1.20373 0.96431 1.00496 0.94635 1.24975 1.03486 0.98931 0.91725 1.86521 1.79118 1.28308 1.40338 0.85731 0.76422 0.80648 0.80311 1.17424 1.17757 1.17369 1.20961 0.93283 0.97245 0.98878 1.21300 1.00014 0.99572 0.91320 0.92682 0.92767 0.92194 0.92509 0.92463 0.92494 0.92190 0.92775 0.92690 0.91426 0.90679 0.90807 0.90784 0.90630 0.91462 0.91298 0.91336 0.80612 0.81509 0.85394 0.86020 0.86337 0.77642 0.85129 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.23 0.53 -90.61 -0.05 0.18 16 3 C -0.14 0.11 7.85 37.16 0.29 0.41 16 4 C -0.13 0.04 7.85 37.16 0.29 0.33 16 5 Si 1.29 -1.65 8.45 -169.99 -1.44 -3.09 16 6 C -0.51 0.39 8.50 101.05 0.86 1.25 16 7 C -0.51 0.53 8.50 101.05 0.86 1.39 16 8 O -0.62 -0.02 7.42 -35.23 -0.26 -0.29 16 9 C 0.15 0.00 4.46 36.01 0.16 0.16 16 10 C -0.10 -0.12 5.79 -106.00 -0.61 -0.73 16 11 C -0.18 -0.19 10.41 28.93 0.30 0.11 16 12 S 0.11 0.06 23.32 -107.50 -2.51 -2.45 16 13 C -0.20 -0.10 10.85 29.44 0.32 0.22 16 14 C -0.06 -0.06 5.36 -106.60 -0.57 -0.63 16 15 C -0.02 -0.01 5.30 -104.89 -0.56 -0.57 16 16 C -0.11 -0.01 8.58 -39.25 -0.34 -0.34 16 17 C -0.12 0.02 8.65 -39.63 -0.34 -0.32 16 18 C -0.12 0.02 5.40 -104.56 -0.56 -0.55 16 19 C -0.08 0.07 2.82 36.01 0.10 0.17 16 20 O -0.54 0.10 12.76 -35.23 -0.45 -0.35 16 21 Si 0.95 -0.84 25.06 -169.99 -4.26 -5.10 16 22 H -0.25 0.21 7.11 56.52 0.40 0.62 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 24 H -0.25 0.08 7.11 56.52 0.40 0.48 16 25 C -0.09 0.00 9.59 -39.63 -0.38 -0.38 16 26 C -0.10 -0.01 9.60 -39.25 -0.38 -0.39 16 27 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 -0.01 7.97 -51.93 -0.41 -0.43 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 38 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.10 7.48 -51.93 -0.39 -0.48 16 42 H 0.07 -0.05 7.21 -51.94 -0.37 -0.42 16 43 H 0.07 -0.09 5.21 -51.93 -0.27 -0.36 16 44 H 0.18 0.07 7.48 -52.48 -0.39 -0.32 16 45 H 0.17 -0.17 8.06 -52.49 -0.42 -0.60 16 46 H 0.13 -0.15 6.53 -52.49 -0.34 -0.49 16 47 H 0.12 -0.17 4.86 -52.49 -0.26 -0.42 16 48 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 49 H 0.38 -1.24 8.70 45.56 0.40 -0.84 16 50 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 51 H 0.13 -0.12 8.06 -52.48 -0.42 -0.55 16 LS Contribution 416.00 15.07 6.27 6.27 Total: 0.00 -4.23 416.00 -10.79 -15.01 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -7.83 Total: -10.63 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.31 Total: 0.62 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: -0.71 Total: -0.64 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: -5.70 Total: -8.19 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.51 Total: -2.45 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -4.23 -10.79 -15.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.218 kcal (2) G-P(sol) polarization free energy of solvation -4.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds