Wall clock time and date at job start Mon Mar 8 2021 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.53006 * 109.46815 * 240.00380 * 2 1 3 5 5 Si 1.86298 * 109.47266 * 120.00245 * 2 1 3 6 6 C 1.86292 * 109.47201 * 299.99784 * 5 2 1 7 7 C 1.86305 * 109.46819 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47083 * 60.00149 * 5 2 1 9 9 C 1.42899 * 113.99814 * 179.97438 * 8 5 2 10 10 C 1.50707 * 109.46775 * 179.97438 * 9 8 5 11 11 C 1.33048 * 122.54322 * 0.02562 * 10 9 8 12 12 S 1.75810 * 109.93280 * 179.97438 * 11 10 9 13 13 C 1.75861 * 91.14856 * 359.83648 * 12 11 10 14 14 C 1.34571 * 109.54041 * 0.28676 * 13 12 11 15 15 C 1.48371 * 122.76744 * 179.97438 * 14 13 12 16 16 C 1.39354 * 120.11632 * 129.42976 * 15 14 13 17 17 C 1.38019 * 119.87064 * 180.29774 * 16 15 14 18 18 C 1.38328 * 120.12256 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.87284 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.46934 * 119.98288 * 19 18 17 21 21 Si 1.86298 * 109.47303 * 359.97438 * 19 18 17 22 22 H 1.48503 * 109.47147 * 60.00093 * 21 19 18 23 23 H 1.48502 * 109.46991 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47291 * 299.99988 * 21 19 18 25 25 C 1.38320 * 120.24999 * 0.02562 * 18 17 16 26 26 C 1.38014 * 120.12179 * 0.02562 * 25 18 17 27 27 H 1.09003 * 109.46816 * 299.99810 * 1 2 3 28 28 H 1.09001 * 109.47374 * 59.99627 * 1 2 3 29 29 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46715 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47377 * 300.00371 * 3 2 1 32 32 H 1.08996 * 109.46913 * 60.00732 * 3 2 1 33 33 H 1.09000 * 109.47237 * 299.99880 * 4 2 1 34 34 H 1.09001 * 109.47155 * 59.99859 * 4 2 1 35 35 H 1.08996 * 109.46840 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47042 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.47330 * 300.00002 * 6 5 2 38 38 H 1.08999 * 109.47204 * 60.00609 * 6 5 2 39 39 H 1.09003 * 109.47200 * 299.99907 * 7 5 2 40 40 H 1.08994 * 109.46827 * 60.00083 * 7 5 2 41 41 H 1.09001 * 109.46927 * 180.02562 * 7 5 2 42 42 H 1.08988 * 109.47258 * 59.99996 * 9 8 5 43 43 H 1.09004 * 109.46986 * 299.99372 * 9 8 5 44 44 H 1.08004 * 125.03472 * 0.02562 * 11 10 9 45 45 H 1.08002 * 125.22857 * 180.17756 * 13 12 11 46 46 H 1.07995 * 120.07028 * 0.25323 * 16 15 14 47 47 H 1.08000 * 119.93722 * 180.02562 * 17 16 15 48 48 H 1.09001 * 109.46891 * 239.97690 * 19 18 17 49 49 H 0.96701 * 113.99873 * 299.99136 * 20 19 18 50 50 H 1.07993 * 119.94182 * 179.97438 * 25 18 17 51 51 H 1.08005 * 120.06329 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6074 -2.4161 1.5210 9 6 2.0296 -3.1818 2.6512 10 6 1.4722 -4.5782 2.5484 11 6 0.7098 -4.9714 1.5314 12 16 0.2461 -6.6537 1.7453 13 6 1.1445 -6.7463 3.2543 14 6 1.7168 -5.5557 3.5112 15 6 2.5458 -5.3066 4.7162 16 6 3.8085 -4.7307 4.5894 17 6 4.5779 -4.5068 5.7131 18 6 4.0976 -4.8524 6.9634 19 6 4.9422 -4.6049 8.1867 20 8 4.2501 -3.7232 9.0729 21 14 6.5593 -3.8319 7.6788 22 1 6.2970 -2.5430 6.9894 23 1 7.3913 -3.5875 8.8844 24 1 7.2785 -4.7484 6.7579 25 6 2.8450 -5.4243 7.0951 26 6 2.0675 -5.6537 5.9782 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8939 -0.5138 3.9321 37 1 1.8935 1.0275 3.0423 38 1 0.4402 -0.0002 3.0423 39 1 4.3771 -1.3929 0.6305 40 1 4.3777 0.1486 1.5203 41 1 4.3775 -1.3931 2.4103 42 1 1.6656 -2.7121 3.5648 43 1 3.1186 -3.2257 2.6741 44 1 0.4195 -4.3495 0.6975 45 1 1.2232 -7.6233 3.8797 46 1 4.1846 -4.4608 3.6137 47 1 5.5564 -4.0602 5.6161 48 1 5.1348 -5.5510 8.6927 49 1 4.0453 -2.8599 8.6883 50 1 2.4752 -5.6926 8.0736 51 1 1.0894 -6.0999 6.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12296696_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:06:17 Heat of formation + Delta-G solvation = -66.642154 kcal Electronic energy + Delta-G solvation = -28730.675894 eV Core-core repulsion = 25037.975178 eV Total energy + Delta-G solvation = -3692.700716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.144 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.99594 -39.43206 -37.68097 -36.97218 -36.82216 -32.90632 -32.04383 -30.57130 -29.42282 -29.06522 -27.99758 -27.83786 -27.37908 -26.33794 -23.94236 -23.58307 -22.03519 -20.42821 -19.61172 -18.88709 -18.43390 -17.38081 -16.91302 -16.84810 -16.44266 -16.13921 -15.93254 -15.82643 -15.64244 -15.02877 -14.85839 -14.81575 -14.69407 -14.27143 -14.16553 -14.00614 -13.84457 -13.65271 -13.58728 -13.35802 -13.33796 -13.17899 -13.09624 -12.95269 -12.92283 -12.76114 -12.40527 -12.31215 -12.20654 -12.07100 -11.93861 -11.80021 -11.66133 -11.62098 -11.50757 -11.32510 -10.44265 -10.38112 -10.10676 -10.06525 -9.93479 -9.50376 -9.04301 -0.16033 0.31654 0.40442 0.71542 1.04604 1.19258 1.46085 1.46676 1.51837 1.64526 1.78073 1.92653 2.11287 2.45744 2.73089 3.54013 3.67444 3.79850 3.93848 3.97159 4.00144 4.12086 4.12638 4.20790 4.32747 4.40414 4.45235 4.46484 4.57281 4.62535 4.66964 4.73022 4.73748 4.77714 4.78683 4.82694 4.83404 4.85541 4.95075 5.00368 5.04566 5.09460 5.09968 5.14565 5.22984 5.24621 5.35602 5.41362 5.45216 5.46861 5.52292 5.55696 5.58886 5.64118 5.68863 5.95297 6.72022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.314 2.686 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.633 6.633 9 C 0.141 3.859 10 C -0.111 4.111 11 C -0.190 4.190 12 S 0.107 5.893 13 C -0.205 4.205 14 C -0.070 4.070 15 C -0.030 4.030 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.078 4.078 20 O -0.552 6.552 21 Si 0.974 3.026 22 H -0.248 1.248 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.092 4.092 26 C -0.108 4.108 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.178 0.822 45 H 0.180 0.820 46 H 0.138 0.862 47 H 0.133 0.867 48 H 0.124 0.876 49 H 0.389 0.611 50 H 0.136 0.864 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 0.624 0.176 1.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.445 2.555 6 C -0.621 4.621 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.063 3.937 10 C -0.123 4.123 11 C -0.325 4.325 12 S 0.373 5.627 13 C -0.340 4.340 14 C -0.083 4.083 15 C -0.032 4.032 16 C -0.130 4.130 17 C -0.146 4.146 18 C -0.121 4.121 19 C -0.188 4.188 20 O -0.359 6.359 21 Si 0.799 3.201 22 H -0.172 1.172 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.110 4.110 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.195 0.805 45 H 0.197 0.803 46 H 0.156 0.844 47 H 0.150 0.850 48 H 0.142 0.858 49 H 0.238 0.762 50 H 0.154 0.846 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.726 -0.754 -0.718 1.269 hybrid contribution 0.423 1.559 0.461 1.680 sum 1.149 0.805 -0.257 1.426 Atomic orbital electron populations 1.21548 0.94295 1.01809 1.01801 1.25881 1.00337 1.02971 1.13013 1.21610 1.01333 0.94710 1.02220 1.21546 1.01042 1.00049 0.96786 0.76225 0.62734 0.52475 0.64103 1.27118 1.06835 1.09933 1.18201 1.27086 1.25031 1.05178 1.04727 1.85283 1.79696 1.46575 1.47701 1.20707 0.98284 0.87453 0.87215 1.18892 1.01806 0.96601 0.95018 1.25472 1.04664 0.98122 1.04282 1.84409 1.50622 1.08676 1.18945 1.25944 1.04347 1.01900 1.01815 1.17608 1.01539 0.93066 0.96064 1.18516 0.93745 0.99363 0.91594 1.21336 0.93418 0.98970 0.99262 1.21132 1.00204 1.00931 0.92325 1.20479 0.96463 1.00269 0.94909 1.24987 1.03179 0.99194 0.91477 1.86490 1.79190 1.29253 1.40980 0.85336 0.75582 0.80386 0.78809 1.17157 1.20341 1.18099 1.21071 0.93445 0.97377 0.99098 1.21423 1.00400 0.99546 0.91268 0.92238 0.93302 0.92454 0.91745 0.93090 0.91862 0.92424 0.93341 0.92084 0.91150 0.90266 0.91278 0.90972 0.90228 0.90878 0.90736 0.90048 0.80454 0.80290 0.84446 0.84993 0.85809 0.76212 0.84634 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 2 C -0.38 0.41 0.53 -10.79 -0.01 0.40 16 3 C -0.14 0.25 7.85 71.98 0.56 0.81 16 4 C -0.14 0.03 7.85 71.98 0.56 0.59 16 5 Si 1.31 -3.73 8.45 68.60 0.58 -3.15 16 6 C -0.52 1.00 8.50 113.37 0.96 1.96 16 7 C -0.52 1.47 8.50 113.37 0.96 2.43 16 8 O -0.63 -0.04 7.42 -148.98 -1.11 -1.15 16 9 C 0.14 -0.04 4.46 71.24 0.32 0.28 16 10 C -0.11 -0.27 5.79 -20.75 -0.12 -0.39 16 11 C -0.19 -0.51 10.41 66.66 0.69 0.19 16 12 S 0.11 0.15 23.32 -56.49 -1.32 -1.17 16 13 C -0.20 -0.22 10.85 66.98 0.73 0.51 16 14 C -0.07 -0.14 5.36 -21.15 -0.11 -0.25 16 15 C -0.03 -0.03 5.30 -20.04 -0.11 -0.13 16 16 C -0.11 0.04 8.58 22.49 0.19 0.24 16 17 C -0.13 0.14 8.65 22.24 0.19 0.33 16 18 C -0.12 0.10 5.40 -19.82 -0.11 0.00 16 19 C -0.08 0.17 2.82 71.24 0.20 0.37 16 20 O -0.55 0.46 12.76 -148.98 -1.90 -1.44 16 21 Si 0.97 -2.06 25.06 68.60 1.72 -0.34 16 22 H -0.25 0.66 7.11 99.48 0.71 1.36 16 23 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 24 H -0.26 0.27 7.11 99.48 0.71 0.98 16 25 C -0.09 0.03 9.59 22.24 0.21 0.25 16 26 C -0.11 0.00 9.60 22.49 0.22 0.21 16 27 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 28 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 30 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 -0.20 7.79 -2.39 -0.02 -0.21 16 33 H 0.06 0.01 7.97 -2.39 -0.02 -0.01 16 34 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 36 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 37 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 38 H 0.07 -0.06 7.79 -2.39 -0.02 -0.08 16 39 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 40 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 41 H 0.07 -0.29 7.48 -2.39 -0.02 -0.30 16 42 H 0.07 -0.13 7.21 -2.39 -0.02 -0.14 16 43 H 0.08 -0.27 5.21 -2.38 -0.01 -0.28 16 44 H 0.18 0.28 7.48 -2.91 -0.02 0.26 16 45 H 0.18 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.14 -0.41 6.53 -2.91 -0.02 -0.43 16 47 H 0.13 -0.49 4.86 -2.91 -0.01 -0.50 16 48 H 0.12 -0.44 7.96 -2.39 -0.02 -0.46 16 49 H 0.39 -2.77 8.70 -74.06 -0.64 -3.41 16 50 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 51 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -9.18 416.00 4.92 -4.26 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: 1.02 Total: -5.37 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.92 Total: 8.35 kcal Atomic # 8 Polarization: 0.42 SS G_CDS: -3.01 Total: -2.59 kcal Atomic # 14 Polarization: -5.80 SS G_CDS: 2.30 Total: -3.50 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.32 Total: -1.17 kcal Total: -9.18 4.92 -4.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.382 kcal (2) G-P(sol) polarization free energy of solvation -9.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds