Wall clock time and date at job start Mon Mar 8 2021 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.47174 * 2 1 4 4 C 1.86300 * 109.47065 * 239.99886 * 2 1 3 5 5 C 1.86806 * 109.47167 * 120.00163 * 2 1 3 6 6 C 1.37993 * 120.05818 * 264.15013 * 5 2 1 7 7 C 1.38349 * 120.11923 * 180.02562 * 6 5 2 8 8 C 1.38295 * 120.24144 * 0.02562 * 7 6 5 9 9 C 1.38041 * 120.12093 * 359.67317 * 8 7 6 10 10 C 1.39312 * 119.87966 * 0.61539 * 9 8 7 11 11 C 1.48392 * 120.12198 * 179.67799 * 10 9 8 12 12 C 1.39336 * 120.11944 * 119.88321 * 11 10 9 13 13 C 1.38012 * 119.87476 * 180.25508 * 12 11 10 14 14 C 1.38318 * 120.12417 * 359.46983 * 13 12 11 15 15 C 1.50702 * 119.88335 * 180.27460 * 14 13 12 16 16 O 1.42900 * 109.46946 * 65.00095 * 15 14 13 17 17 Si 1.86300 * 109.47489 * 185.00037 * 15 14 13 18 18 H 1.48501 * 109.46958 * 299.99989 * 17 15 14 19 19 H 1.48497 * 109.46846 * 60.00214 * 17 15 14 20 20 H 1.48497 * 109.47049 * 180.02562 * 17 15 14 21 21 C 1.38327 * 120.24429 * 0.29926 * 14 13 12 22 22 C 1.38020 * 120.11634 * 359.95339 * 21 14 13 23 23 H 1.08999 * 109.46945 * 289.83861 * 1 2 3 24 24 H 1.08999 * 109.47137 * 49.84042 * 1 2 3 25 25 H 1.09000 * 109.47259 * 169.83670 * 1 2 3 26 26 H 1.09003 * 109.47053 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46687 * 299.99943 * 3 2 1 28 28 H 1.09000 * 109.47043 * 60.00417 * 3 2 1 29 29 H 1.09004 * 109.47224 * 310.31322 * 4 2 1 30 30 H 1.09003 * 109.47428 * 70.31429 * 4 2 1 31 31 H 1.09004 * 109.47085 * 190.31123 * 4 2 1 32 32 H 1.07999 * 119.94118 * 0.02720 * 6 5 2 33 33 H 1.07997 * 119.87305 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.93615 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.06132 * 180.30067 * 9 8 7 36 36 H 1.07995 * 120.06326 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.94162 * 179.74511 * 13 12 11 38 38 H 1.09003 * 109.47378 * 305.00278 * 15 14 13 39 39 H 0.96694 * 114.00213 * 180.02562 * 16 15 14 40 40 H 1.07994 * 119.94354 * 179.97438 * 21 14 13 41 41 H 1.08004 * 120.05628 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8807 1.5252 6 6 2.8309 -0.1573 2.6485 7 6 3.2927 -0.8081 3.7786 8 6 3.4116 -2.1859 3.7892 9 6 3.0632 -2.9199 2.6732 10 6 2.6033 -2.2692 1.5304 11 6 2.2342 -3.0524 0.3253 12 6 0.9364 -2.9906 -0.1783 13 6 0.5972 -3.7252 -1.2963 14 6 1.5455 -4.5131 -1.9233 15 6 1.1707 -5.3082 -3.1474 16 8 0.8355 -4.4149 -4.2113 17 14 2.6103 -6.3732 -3.6611 18 1 3.7789 -5.5105 -3.9699 19 1 2.9586 -7.3014 -2.5556 20 1 2.2412 -7.1561 -4.8677 21 6 2.8365 -4.5744 -1.4306 22 6 3.1854 -3.8480 -0.3100 23 1 -0.3633 0.3488 0.9667 24 1 -0.3633 0.6628 -0.7854 25 1 -0.3634 -1.0115 -0.1813 26 1 3.5741 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1208 2.2703 0.8900 29 1 1.9783 -1.8390 -1.6179 30 1 2.2787 -0.2693 -2.4016 31 1 3.5584 -1.0403 -1.4339 32 1 2.7403 0.9189 2.6455 33 1 3.5621 -0.2380 4.6554 34 1 3.7730 -2.6890 4.6740 35 1 3.1518 -3.9963 2.6842 36 1 0.1965 -2.3720 0.3076 37 1 -0.4095 -3.6813 -1.6851 38 1 0.3129 -5.9414 -2.9209 39 1 0.5831 -4.8586 -5.0326 40 1 3.5730 -5.1915 -1.9237 41 1 4.1936 -3.8970 0.0741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12296696_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:08:18 Heat of formation + Delta-G solvation = -16.836910 kcal Electronic energy + Delta-G solvation = -20635.648601 eV Core-core repulsion = 17796.788025 eV Total energy + Delta-G solvation = -2838.860577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00287 -39.44077 -37.59108 -33.99244 -32.24487 -31.59267 -30.53736 -29.37597 -28.43286 -28.19341 -26.51475 -23.91264 -23.29490 -22.81891 -21.52139 -18.49906 -18.34525 -17.02765 -16.79932 -16.44046 -15.86546 -15.62425 -15.26905 -14.85462 -14.58331 -14.52275 -14.36758 -14.27973 -14.03795 -13.88810 -13.51523 -13.41023 -13.24808 -13.18722 -13.05685 -12.80242 -12.51913 -12.28448 -12.12361 -12.05910 -11.71116 -11.67961 -10.97930 -10.77584 -10.76773 -10.36484 -9.95990 -9.82139 -9.68051 -9.18920 0.00475 0.42728 0.49530 0.67570 1.12629 1.41633 1.48111 1.77588 1.88828 1.94014 2.03455 2.64261 2.67748 2.99800 3.40649 3.67124 3.88945 3.92970 4.06151 4.14620 4.22116 4.34115 4.41443 4.52016 4.62796 4.67220 4.74885 4.77485 4.79864 4.82281 4.92530 4.96186 5.00781 5.03750 5.07057 5.13970 5.40266 5.44437 5.51904 5.53839 5.58924 5.61615 5.67249 5.73281 5.80503 5.98856 6.16845 6.56158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.037 2.963 3 C -0.446 4.446 4 C -0.454 4.454 5 C -0.354 4.354 6 C -0.089 4.089 7 C -0.129 4.129 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.020 4.020 11 C -0.042 4.042 12 C -0.119 4.119 13 C -0.087 4.087 14 C -0.073 4.073 15 C -0.082 4.082 16 O -0.543 6.543 17 Si 0.943 3.057 18 H -0.247 1.247 19 H -0.249 1.249 20 H -0.257 1.257 21 C -0.120 4.120 22 C -0.097 4.097 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.380 0.620 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -0.983 -0.324 1.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.230 2.770 3 C -0.554 4.554 4 C -0.562 4.562 5 C -0.395 4.395 6 C -0.107 4.107 7 C -0.147 4.147 8 C -0.127 4.127 9 C -0.134 4.134 10 C -0.020 4.020 11 C -0.042 4.042 12 C -0.137 4.137 13 C -0.105 4.105 14 C -0.073 4.073 15 C -0.192 4.192 16 O -0.349 6.349 17 Si 0.765 3.235 18 H -0.171 1.171 19 H -0.173 1.173 20 H -0.181 1.181 21 C -0.138 4.138 22 C -0.115 4.115 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.139 0.861 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.007 -1.089 -0.055 1.090 hybrid contribution -0.323 -0.223 -0.033 0.394 sum -0.330 -1.312 -0.088 1.355 Atomic orbital electron populations 1.26417 1.20002 1.04984 1.04584 0.78438 0.67541 0.66409 0.64612 1.26100 1.06426 1.18385 1.04510 1.26550 1.06470 1.09138 1.14015 1.27424 1.03865 0.97773 1.10456 1.21055 0.97139 0.99735 0.92800 1.21319 1.00095 0.94757 0.98510 1.21133 0.99196 0.94296 0.98111 1.21263 0.99548 0.99721 0.92895 1.18597 0.98166 0.92896 0.92311 1.18805 0.93790 0.96950 0.94622 1.21535 0.95935 0.99670 0.96531 1.20900 0.99659 0.95283 0.94628 1.19292 0.93773 0.98788 0.95419 1.24726 1.08313 0.97622 0.88559 1.86516 1.90567 1.35042 1.22737 0.85795 0.78526 0.78250 0.80885 1.17068 1.17311 1.18119 1.20931 0.95342 1.00136 0.97369 1.21088 0.99269 0.95888 0.95227 0.91136 0.90861 0.90504 0.91069 0.90925 0.91217 0.89503 0.91500 0.91494 0.86019 0.86256 0.86041 0.86134 0.84271 0.85228 0.90534 0.77291 0.86089 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.20 8.48 101.05 0.86 1.05 16 2 Si 1.04 -0.49 10.38 -169.99 -1.77 -2.26 16 3 C -0.45 0.16 8.38 101.05 0.85 1.00 16 4 C -0.45 -0.52 7.66 101.05 0.77 0.26 16 5 C -0.35 -0.42 4.61 -39.26 -0.18 -0.60 16 6 C -0.09 -0.10 9.28 -39.63 -0.37 -0.46 16 7 C -0.13 -0.15 10.04 -39.52 -0.40 -0.54 16 8 C -0.11 -0.13 10.03 -39.63 -0.40 -0.53 16 9 C -0.12 -0.19 9.68 -39.25 -0.38 -0.57 16 10 C -0.02 -0.04 5.33 -104.90 -0.56 -0.59 16 11 C -0.04 -0.06 3.17 -104.90 -0.33 -0.39 16 12 C -0.12 -0.11 5.99 -39.26 -0.24 -0.35 16 13 C -0.09 -0.09 8.74 -39.64 -0.35 -0.43 16 14 C -0.07 -0.10 5.18 -104.56 -0.54 -0.64 16 15 C -0.08 0.03 2.79 36.01 0.10 0.13 16 16 O -0.54 -0.04 12.81 -35.23 -0.45 -0.49 16 17 Si 0.94 -0.38 25.13 -169.99 -4.27 -4.65 16 18 H -0.25 -0.26 7.04 56.52 0.40 0.14 16 19 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 20 H -0.26 0.08 7.11 56.52 0.40 0.48 16 21 C -0.12 -0.17 8.59 -39.63 -0.34 -0.51 16 22 C -0.10 -0.13 9.29 -39.25 -0.36 -0.49 16 23 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.08 -0.05 4.98 -51.93 -0.26 -0.31 16 26 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 27 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 28 H 0.07 -0.06 7.65 -51.93 -0.40 -0.46 16 29 H 0.09 0.15 3.46 -51.93 -0.18 -0.03 16 30 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 31 H 0.07 0.10 7.96 -51.93 -0.41 -0.31 16 32 H 0.12 -0.09 7.26 -52.49 -0.38 -0.47 16 33 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 34 H 0.12 -0.06 8.06 -52.48 -0.42 -0.48 16 35 H 0.12 0.05 8.06 -52.48 -0.42 -0.37 16 36 H 0.14 -0.03 4.93 -52.49 -0.26 -0.29 16 37 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 38 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 39 H 0.38 -1.61 8.74 45.56 0.40 -1.21 16 40 H 0.12 0.03 4.84 -52.49 -0.25 -0.22 16 41 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 324.72 15.07 4.89 4.89 Total: 0.00 -4.82 324.72 -8.60 -13.42 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: -5.14 Total: -7.26 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.87 Total: -3.67 kcal Atomic # 8 Polarization: -0.04 SS G_CDS: -0.45 Total: -0.49 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: -6.04 Total: -6.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -4.82 -8.60 -13.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.415 kcal (2) G-P(sol) polarization free energy of solvation -4.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds