Wall clock time and date at job start Mon Mar 8 2021 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.47174 * 2 1 4 4 C 1.86300 * 109.47065 * 239.99886 * 2 1 3 5 5 C 1.86806 * 109.47167 * 120.00163 * 2 1 3 6 6 C 1.37993 * 120.05818 * 264.15013 * 5 2 1 7 7 C 1.38349 * 120.11923 * 180.02562 * 6 5 2 8 8 C 1.38295 * 120.24144 * 0.02562 * 7 6 5 9 9 C 1.38041 * 120.12093 * 359.67317 * 8 7 6 10 10 C 1.39312 * 119.87966 * 0.61539 * 9 8 7 11 11 C 1.48392 * 120.12198 * 179.67799 * 10 9 8 12 12 C 1.39336 * 120.11944 * 119.88321 * 11 10 9 13 13 C 1.38012 * 119.87476 * 180.25508 * 12 11 10 14 14 C 1.38318 * 120.12417 * 359.46983 * 13 12 11 15 15 C 1.50702 * 119.88335 * 180.27460 * 14 13 12 16 16 O 1.42900 * 109.46946 * 65.00095 * 15 14 13 17 17 Si 1.86300 * 109.47489 * 185.00037 * 15 14 13 18 18 H 1.48501 * 109.46958 * 299.99989 * 17 15 14 19 19 H 1.48497 * 109.46846 * 60.00214 * 17 15 14 20 20 H 1.48497 * 109.47049 * 180.02562 * 17 15 14 21 21 C 1.38327 * 120.24429 * 0.29926 * 14 13 12 22 22 C 1.38020 * 120.11634 * 359.95339 * 21 14 13 23 23 H 1.08999 * 109.46945 * 289.83861 * 1 2 3 24 24 H 1.08999 * 109.47137 * 49.84042 * 1 2 3 25 25 H 1.09000 * 109.47259 * 169.83670 * 1 2 3 26 26 H 1.09003 * 109.47053 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46687 * 299.99943 * 3 2 1 28 28 H 1.09000 * 109.47043 * 60.00417 * 3 2 1 29 29 H 1.09004 * 109.47224 * 310.31322 * 4 2 1 30 30 H 1.09003 * 109.47428 * 70.31429 * 4 2 1 31 31 H 1.09004 * 109.47085 * 190.31123 * 4 2 1 32 32 H 1.07999 * 119.94118 * 0.02720 * 6 5 2 33 33 H 1.07997 * 119.87305 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.93615 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.06132 * 180.30067 * 9 8 7 36 36 H 1.07995 * 120.06326 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.94162 * 179.74511 * 13 12 11 38 38 H 1.09003 * 109.47378 * 305.00278 * 15 14 13 39 39 H 0.96694 * 114.00213 * 180.02562 * 16 15 14 40 40 H 1.07994 * 119.94354 * 179.97438 * 21 14 13 41 41 H 1.08004 * 120.05628 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8807 1.5252 6 6 2.8309 -0.1573 2.6485 7 6 3.2927 -0.8081 3.7786 8 6 3.4116 -2.1859 3.7892 9 6 3.0632 -2.9199 2.6732 10 6 2.6033 -2.2692 1.5304 11 6 2.2342 -3.0524 0.3253 12 6 0.9364 -2.9906 -0.1783 13 6 0.5972 -3.7252 -1.2963 14 6 1.5455 -4.5131 -1.9233 15 6 1.1707 -5.3082 -3.1474 16 8 0.8355 -4.4149 -4.2113 17 14 2.6103 -6.3732 -3.6611 18 1 3.7789 -5.5105 -3.9699 19 1 2.9586 -7.3014 -2.5556 20 1 2.2412 -7.1561 -4.8677 21 6 2.8365 -4.5744 -1.4306 22 6 3.1854 -3.8480 -0.3100 23 1 -0.3633 0.3488 0.9667 24 1 -0.3633 0.6628 -0.7854 25 1 -0.3634 -1.0115 -0.1813 26 1 3.5741 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1208 2.2703 0.8900 29 1 1.9783 -1.8390 -1.6179 30 1 2.2787 -0.2693 -2.4016 31 1 3.5584 -1.0403 -1.4339 32 1 2.7403 0.9189 2.6455 33 1 3.5621 -0.2380 4.6554 34 1 3.7730 -2.6890 4.6740 35 1 3.1518 -3.9963 2.6842 36 1 0.1965 -2.3720 0.3076 37 1 -0.4095 -3.6813 -1.6851 38 1 0.3129 -5.9414 -2.9209 39 1 0.5831 -4.8586 -5.0326 40 1 3.5730 -5.1915 -1.9237 41 1 4.1936 -3.8970 0.0741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12296696_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:08:17 Heat of formation + Delta-G solvation = -6.993346 kcal Electronic energy + Delta-G solvation = -20635.221753 eV Core-core repulsion = 17796.788025 eV Total energy + Delta-G solvation = -2838.433728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03992 -39.46571 -37.55631 -34.02346 -32.28807 -31.62991 -30.56522 -29.35484 -28.39024 -28.22381 -26.51963 -23.95944 -23.32269 -22.86193 -21.56318 -18.44296 -18.37786 -17.03993 -16.81422 -16.46654 -15.91288 -15.65274 -15.29568 -14.85154 -14.58084 -14.54337 -14.36873 -14.30590 -14.04582 -13.87024 -13.53110 -13.41799 -13.24095 -13.14992 -13.06516 -12.80785 -12.57284 -12.32747 -12.12589 -12.07404 -11.72338 -11.69984 -10.96485 -10.79473 -10.77261 -10.32259 -10.00589 -9.88126 -9.72987 -9.24557 -0.05121 0.36979 0.44000 0.61535 1.15906 1.43307 1.48197 1.79439 1.89252 1.97286 2.06577 2.61799 2.66471 2.94636 3.47037 3.64610 3.89169 3.91400 4.05847 4.12913 4.21713 4.35033 4.46113 4.50420 4.60621 4.65138 4.80225 4.81885 4.85155 4.86445 4.87111 4.90570 4.92488 5.00063 5.04059 5.10300 5.35300 5.41542 5.49828 5.53765 5.55654 5.62078 5.64077 5.69921 5.72632 5.95020 6.13531 6.83208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.082 2.918 3 C -0.454 4.454 4 C -0.469 4.469 5 C -0.367 4.367 6 C -0.100 4.100 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.130 4.130 10 C -0.032 4.032 11 C -0.046 4.046 12 C -0.122 4.122 13 C -0.093 4.093 14 C -0.085 4.085 15 C -0.079 4.079 16 O -0.560 6.560 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.260 1.260 20 H -0.254 1.254 21 C -0.133 4.133 22 C -0.106 4.106 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.397 0.603 40 H 0.126 0.874 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -0.595 -0.268 1.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.272 2.728 3 C -0.562 4.562 4 C -0.575 4.575 5 C -0.407 4.407 6 C -0.118 4.118 7 C -0.158 4.158 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.032 4.032 11 C -0.046 4.046 12 C -0.139 4.139 13 C -0.111 4.111 14 C -0.085 4.085 15 C -0.190 4.190 16 O -0.369 6.369 17 Si 0.795 3.205 18 H -0.198 1.198 19 H -0.184 1.184 20 H -0.178 1.178 21 C -0.151 4.151 22 C -0.124 4.124 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.116 0.884 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.816 -0.730 -0.018 1.095 hybrid contribution -0.029 -0.356 -0.068 0.364 sum -0.845 -1.086 -0.086 1.379 Atomic orbital electron populations 1.26464 1.19893 1.05289 1.05012 0.77759 0.67112 0.65492 0.62438 1.26165 1.06345 1.18549 1.05100 1.26762 1.05952 1.09272 1.15502 1.27804 1.03780 0.97747 1.11339 1.21351 0.96937 1.00734 0.92733 1.21603 0.99993 0.94961 0.99220 1.21372 0.99219 0.94653 0.98517 1.21444 0.99942 1.00192 0.93239 1.18747 0.98572 0.93381 0.92468 1.18855 0.94065 0.97043 0.94657 1.21690 0.95950 0.99719 0.96565 1.21093 1.00214 0.95142 0.94602 1.19570 0.93761 0.99042 0.96139 1.24705 1.09008 0.97293 0.87959 1.86469 1.90665 1.35958 1.23772 0.85419 0.77453 0.77310 0.80326 1.19848 1.18405 1.17846 1.21091 0.95823 1.00514 0.97630 1.21223 0.99668 0.96098 0.95436 0.90731 0.90374 0.90326 0.91327 0.90604 0.90384 0.90091 0.91529 0.92420 0.84344 0.84774 0.84728 0.85690 0.83297 0.84011 0.88392 0.75227 0.85693 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.69 8.48 113.37 0.96 1.65 16 2 Si 1.08 -1.07 10.38 68.60 0.71 -0.36 16 3 C -0.45 0.56 8.38 113.37 0.95 1.51 16 4 C -0.47 -1.46 7.66 113.37 0.87 -0.59 16 5 C -0.37 -0.96 4.61 22.48 0.10 -0.86 16 6 C -0.10 -0.20 9.28 22.24 0.21 0.01 16 7 C -0.14 -0.31 10.04 22.31 0.22 -0.09 16 8 C -0.12 -0.34 10.03 22.24 0.22 -0.12 16 9 C -0.13 -0.53 9.68 22.48 0.22 -0.32 16 10 C -0.03 -0.14 5.33 -20.04 -0.11 -0.24 16 11 C -0.05 -0.18 3.17 -20.04 -0.06 -0.24 16 12 C -0.12 -0.28 5.99 22.48 0.13 -0.14 16 13 C -0.09 -0.20 8.74 22.23 0.19 -0.01 16 14 C -0.09 -0.26 5.18 -19.82 -0.10 -0.37 16 15 C -0.08 0.07 2.79 71.24 0.20 0.27 16 16 O -0.56 0.13 12.81 -148.98 -1.91 -1.78 16 17 Si 0.97 -0.35 25.13 68.60 1.72 1.37 16 18 H -0.27 -1.01 7.04 99.48 0.70 -0.31 16 19 H -0.26 -0.28 7.11 99.48 0.71 0.42 16 20 H -0.25 0.25 7.11 99.48 0.71 0.95 16 21 C -0.13 -0.53 8.59 22.24 0.19 -0.34 16 22 C -0.11 -0.43 9.29 22.48 0.21 -0.22 16 23 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 24 H 0.08 -0.18 7.96 -2.39 -0.02 -0.19 16 25 H 0.08 -0.14 4.98 -2.39 -0.01 -0.15 16 26 H 0.07 -0.04 7.96 -2.39 -0.02 -0.05 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.08 -0.22 7.65 -2.39 -0.02 -0.23 16 29 H 0.08 0.36 3.46 -2.39 -0.01 0.35 16 30 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 31 H 0.06 0.26 7.96 -2.39 -0.02 0.25 16 32 H 0.14 -0.31 7.26 -2.91 -0.02 -0.33 16 33 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 34 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 35 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.15 -0.06 4.93 -2.91 -0.01 -0.08 16 37 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 39 H 0.40 -3.63 8.74 -74.06 -0.65 -4.27 16 40 H 0.13 0.26 4.84 -2.91 -0.01 0.25 16 41 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 Total: 0.00 -11.10 324.72 6.07 -5.03 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.13 Total: -4.17 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 4.41 Total: -0.09 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -1.91 Total: -1.78 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.44 Total: 1.01 kcal Total: -11.10 6.07 -5.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.961 kcal (2) G-P(sol) polarization free energy of solvation -11.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds