Wall clock time and date at job start Mon Mar 8 2021 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47127 * 2 1 4 4 C 1.86297 * 109.47475 * 239.99519 * 2 1 3 5 5 C 1.86307 * 109.46901 * 119.99316 * 2 1 3 6 6 C 1.52997 * 109.46771 * 60.00284 * 5 2 1 7 7 O 1.42906 * 109.47071 * 179.97438 * 6 5 2 8 8 C 1.35633 * 116.99804 * 179.97438 * 7 6 5 9 9 C 1.40320 * 120.22294 * 180.02562 * 8 7 6 10 10 C 1.48311 * 121.16268 * 0.02562 * 9 8 7 11 11 C 1.39378 * 120.12329 * 309.70711 * 10 9 8 12 12 C 1.38010 * 119.87194 * 179.76260 * 11 10 9 13 13 C 1.38323 * 120.12308 * 0.51008 * 12 11 10 14 14 C 1.50704 * 119.87196 * 179.76298 * 13 12 11 15 15 O 1.42902 * 109.46978 * 244.97491 * 14 13 12 16 16 Si 1.86298 * 109.47075 * 4.97734 * 14 13 12 17 17 H 1.48503 * 109.47127 * 60.00178 * 16 14 13 18 18 H 1.48502 * 109.46963 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47083 * 299.99940 * 16 14 13 20 20 C 1.38328 * 120.25586 * 359.74315 * 13 12 11 21 21 C 1.38011 * 120.12148 * 359.97438 * 20 13 12 22 22 C 1.39833 * 117.68401 * 179.97438 * 9 8 7 23 23 C 1.38485 * 117.88648 * 359.97438 * 22 9 8 24 24 C 1.50704 * 119.95017 * 180.02562 * 23 22 9 25 25 F 1.39893 * 109.47189 * 89.99879 * 24 23 22 26 26 F 1.39904 * 109.46600 * 209.99932 * 24 23 22 27 27 F 1.39902 * 109.47141 * 329.99597 * 24 23 22 28 28 N 1.31895 * 120.09260 * 0.02562 * 23 22 9 29 29 N 1.28283 * 122.56901 * 359.97438 * 28 23 22 30 30 H 1.08995 * 109.47506 * 300.00658 * 1 2 3 31 31 H 1.09004 * 109.47020 * 60.00458 * 1 2 3 32 32 H 1.09003 * 109.47537 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47234 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46796 * 299.99679 * 3 2 1 35 35 H 1.08995 * 109.47464 * 59.99317 * 3 2 1 36 36 H 1.09003 * 109.46904 * 300.00591 * 4 2 1 37 37 H 1.09004 * 109.46978 * 59.99997 * 4 2 1 38 38 H 1.08994 * 109.47388 * 179.97438 * 4 2 1 39 39 H 1.08995 * 109.47062 * 300.00298 * 5 2 1 40 40 H 1.09002 * 109.46736 * 179.97438 * 5 2 1 41 41 H 1.09001 * 109.47517 * 59.99769 * 6 5 2 42 42 H 1.09000 * 109.47485 * 299.99993 * 6 5 2 43 43 H 1.08001 * 120.06216 * 0.02562 * 11 10 9 44 44 H 1.08003 * 119.93521 * 180.22494 * 12 11 10 45 45 H 1.09004 * 109.46833 * 124.97796 * 14 13 12 46 46 H 0.96700 * 113.99641 * 60.00617 * 15 14 13 47 47 H 1.07998 * 119.94066 * 179.97438 * 20 13 12 48 48 H 1.08005 * 120.06262 * 180.02562 * 21 20 13 49 49 H 1.08003 * 121.05801 * 180.26680 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4839 -0.8781 1.5213 6 6 1.9739 -2.3206 1.5214 7 8 2.4507 -2.9943 2.6880 8 6 2.0858 -4.2915 2.8421 9 6 2.5155 -5.0177 3.9633 10 6 3.3716 -4.3925 5.0006 11 6 4.5258 -3.7033 4.6328 12 6 5.3160 -3.1194 5.6019 13 6 4.9700 -3.2262 6.9369 14 6 5.8398 -2.5909 7.9909 15 8 6.4102 -3.6095 8.8152 16 14 7.2022 -1.6211 7.1699 17 1 6.6094 -0.5626 6.3134 18 1 8.0597 -0.9956 8.2086 19 1 8.0238 -2.5324 6.3335 20 6 3.8284 -3.9135 7.3082 21 6 3.0276 -4.4964 6.3472 22 6 2.1076 -6.3510 4.0691 23 6 1.3076 -6.8655 3.0626 24 6 0.8407 -8.2968 3.1301 25 9 -0.3798 -8.3575 3.8110 26 9 0.6767 -8.7953 1.8333 27 9 1.7921 -9.0661 3.8086 28 7 0.9538 -6.1046 2.0450 29 7 1.3219 -4.8804 1.9373 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 3.5739 1.7565 0.0005 34 1 2.1206 2.2703 -0.8901 35 1 2.1206 2.2704 0.8899 36 1 2.1207 -1.9060 -1.5210 37 1 2.1207 -0.3645 -2.4111 38 1 3.5740 -0.8779 -1.5212 39 1 2.1205 -0.3642 2.4112 40 1 3.5739 -0.8785 1.5211 41 1 2.3373 -2.8345 0.6314 42 1 0.8839 -2.3206 1.5213 43 1 4.7991 -3.6228 3.5910 44 1 6.2087 -2.5820 5.3178 45 1 5.2367 -1.9220 8.6049 46 1 6.9609 -4.2421 8.3341 47 1 3.5632 -3.9940 8.3520 48 1 2.1362 -5.0325 6.6381 49 1 2.4031 -6.9589 4.9115 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12296696_17781646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:30:31 Heat of formation + Delta-G solvation = -179.340039 kcal Electronic energy + Delta-G solvation = -35452.329783 eV Core-core repulsion = 30281.913745 eV Total energy + Delta-G solvation = -5170.416039 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 400.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -51.22732 -48.77438 -48.65864 -42.76463 -40.66491 -39.91262 -37.87382 -35.46610 -34.31678 -32.60965 -32.19715 -31.59763 -29.55855 -28.55146 -28.52778 -28.20651 -27.19972 -25.95626 -24.27913 -23.87302 -23.70147 -22.24337 -20.23478 -19.82183 -19.63136 -19.55990 -18.74171 -18.54092 -17.77195 -17.19911 -16.99010 -16.41624 -16.09759 -15.88488 -15.79153 -15.65753 -15.44750 -15.35641 -15.21323 -15.11226 -15.10558 -14.81241 -14.80322 -14.56222 -14.40094 -14.38483 -14.25472 -14.19299 -13.94622 -13.84785 -13.78736 -13.39912 -13.39155 -13.29377 -13.20019 -12.89961 -12.69955 -12.58427 -12.32198 -12.18321 -12.13837 -11.82554 -11.66074 -11.24749 -11.02944 -10.93444 -10.93142 -10.66978 -10.53060 -10.13539 -9.71158 -0.95631 -0.67564 0.08603 0.22644 1.03492 1.10030 1.31822 1.32850 1.41817 1.67463 1.72414 1.81811 1.88325 1.91171 2.34025 2.42843 2.48126 2.54192 2.83486 3.16159 3.21130 3.24770 3.34391 3.44339 3.53022 3.70363 3.80882 3.87861 3.89004 3.93024 4.04480 4.16679 4.29875 4.38503 4.42654 4.47651 4.60823 4.61396 4.65296 4.65392 4.66384 4.67646 4.68242 4.70650 4.83880 5.01206 5.13237 5.23686 5.30536 5.36600 5.45015 5.46741 5.69437 5.78026 6.42176 7.11007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.027 2.973 3 C -0.450 4.450 4 C -0.455 4.455 5 C -0.422 4.422 6 C 0.069 3.931 7 O -0.281 6.281 8 C 0.301 3.699 9 C -0.054 4.054 10 C -0.051 4.051 11 C -0.074 4.074 12 C -0.124 4.124 13 C -0.105 4.105 14 C -0.083 4.083 15 O -0.536 6.536 16 Si 0.947 3.053 17 H -0.249 1.249 18 H -0.252 1.252 19 H -0.251 1.251 20 C -0.088 4.088 21 C -0.094 4.094 22 C -0.038 4.038 23 C -0.055 4.055 24 C 0.538 3.462 25 F -0.165 7.165 26 F -0.158 7.158 27 F -0.167 7.167 28 N -0.147 5.147 29 N -0.284 5.284 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.120 0.880 46 H 0.377 0.623 47 H 0.135 0.865 48 H 0.130 0.870 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 3.364 0.865 4.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.221 2.779 3 C -0.557 4.557 4 C -0.562 4.562 5 C -0.504 4.504 6 C -0.005 4.005 7 O -0.184 6.184 8 C 0.117 3.883 9 C -0.066 4.066 10 C -0.051 4.051 11 C -0.092 4.092 12 C -0.142 4.142 13 C -0.105 4.105 14 C -0.193 4.193 15 O -0.341 6.341 16 Si 0.769 3.231 17 H -0.172 1.172 18 H -0.176 1.176 19 H -0.175 1.175 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.065 4.065 23 C -0.203 4.203 24 C 0.481 3.519 25 F -0.146 7.146 26 F -0.139 7.139 27 F -0.148 7.148 28 N 0.007 4.993 29 N -0.142 5.142 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.138 0.862 46 H 0.224 0.776 47 H 0.153 0.847 48 H 0.148 0.852 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.140 4.528 -0.305 5.018 hybrid contribution 0.421 -0.906 0.885 1.335 sum 2.561 3.622 0.580 4.473 Atomic orbital electron populations 1.26188 1.20560 1.04742 1.04739 0.78983 0.67060 0.66895 0.64957 1.26099 1.06369 1.18534 1.04749 1.26186 1.06358 1.08256 1.15403 1.26633 1.07378 0.98795 1.17600 1.22770 1.00067 0.91998 0.85643 1.86428 1.68612 1.17561 1.45768 1.21750 0.89372 0.86936 0.90258 1.19082 1.00027 0.92812 0.94661 1.18250 0.94919 1.00335 0.91626 1.21059 0.93096 0.95280 0.99800 1.20998 1.00200 1.00470 0.92493 1.20474 0.96807 0.99017 0.94229 1.25018 1.02349 0.95624 0.96342 1.86538 1.68534 1.42659 1.36392 0.85714 0.78121 0.79845 0.79399 1.17235 1.17594 1.17458 1.20961 0.93369 0.96324 0.99938 1.21259 0.99723 0.99088 0.91173 1.22132 0.92245 0.93855 0.98290 1.22443 1.03867 0.96735 0.97253 1.17355 0.75426 0.84387 0.74730 1.93274 1.44675 1.96661 1.80024 1.93278 1.95255 1.88622 1.36790 1.93244 1.64298 1.77022 1.80252 1.72625 1.12153 0.97810 1.16672 1.73248 1.13565 1.03603 1.23808 0.91128 0.90884 0.91047 0.91118 0.90860 0.91102 0.91040 0.90883 0.91142 0.89257 0.89312 0.90508 0.90513 0.85285 0.85639 0.86180 0.77563 0.84724 0.85226 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.87 16 2 Si 1.03 -3.75 12.19 -169.99 -2.07 -5.83 16 3 C -0.45 1.14 8.65 101.05 0.87 2.02 16 4 C -0.45 1.05 8.65 101.05 0.87 1.93 16 5 C -0.42 1.06 4.82 37.16 0.18 1.24 16 6 C 0.07 -0.05 4.70 37.16 0.17 0.12 16 7 O -0.28 -0.27 8.69 -18.60 -0.16 -0.43 16 8 C 0.30 0.52 7.51 -16.59 -0.12 0.40 16 9 C -0.05 -0.02 5.51 -104.37 -0.58 -0.60 16 10 C -0.05 0.01 5.34 -104.91 -0.56 -0.55 16 11 C -0.07 0.02 8.87 -39.24 -0.35 -0.33 16 12 C -0.12 0.10 8.65 -39.63 -0.34 -0.24 16 13 C -0.10 0.10 5.36 -104.56 -0.56 -0.46 16 14 C -0.08 0.14 2.80 36.01 0.10 0.24 16 15 O -0.54 0.49 12.83 -35.23 -0.45 0.03 16 16 Si 0.95 -1.46 25.13 -169.99 -4.27 -5.73 16 17 H -0.25 0.23 7.11 56.52 0.40 0.63 16 18 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 19 H -0.25 0.36 7.04 56.52 0.40 0.76 16 20 C -0.09 0.09 9.67 -39.63 -0.38 -0.29 16 21 C -0.09 0.10 9.56 -39.24 -0.38 -0.28 16 22 C -0.04 0.01 9.08 -38.89 -0.35 -0.34 16 23 C -0.05 -0.09 6.37 -82.47 -0.53 -0.61 16 24 C 0.54 0.79 3.44 36.01 0.12 0.91 16 25 F -0.17 -0.32 17.30 2.25 0.04 -0.28 16 26 F -0.16 -0.46 17.05 2.25 0.04 -0.42 16 27 F -0.17 -0.11 16.50 2.25 0.04 -0.07 16 28 N -0.15 -0.52 11.10 33.57 0.37 -0.15 16 29 N -0.28 -0.88 10.40 30.69 0.32 -0.56 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 38 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 39 H 0.09 -0.22 7.96 -51.93 -0.41 -0.63 16 40 H 0.09 -0.25 7.96 -51.93 -0.41 -0.66 16 41 H 0.08 -0.09 7.76 -51.93 -0.40 -0.50 16 42 H 0.08 -0.07 7.76 -51.93 -0.40 -0.48 16 43 H 0.13 -0.12 7.78 -52.49 -0.41 -0.53 16 44 H 0.13 -0.25 4.84 -52.48 -0.25 -0.50 16 45 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 46 H 0.38 -1.52 8.70 45.56 0.40 -1.12 16 47 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 48 H 0.13 -0.34 8.06 -52.48 -0.42 -0.77 16 49 H 0.17 -0.52 7.67 -52.48 -0.40 -0.93 16 LS Contribution 425.94 15.07 6.42 6.42 Total: 0.00 -6.06 425.94 -6.74 -12.81 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -6.06 Total: -10.83 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.95 Total: 5.03 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: 0.69 Total: -0.70 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.61 Total: -0.39 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.11 Total: -0.77 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: -6.34 Total: -11.56 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -6.06 -6.74 -12.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_17781646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.535 kcal (2) G-P(sol) polarization free energy of solvation -6.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds