Wall clock time and date at job start Mon Mar 8 2021 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47127 * 2 1 4 4 C 1.86297 * 109.47475 * 239.99519 * 2 1 3 5 5 C 1.86307 * 109.46901 * 119.99316 * 2 1 3 6 6 C 1.52997 * 109.46771 * 60.00284 * 5 2 1 7 7 O 1.42906 * 109.47071 * 179.97438 * 6 5 2 8 8 C 1.35633 * 116.99804 * 179.97438 * 7 6 5 9 9 C 1.40320 * 120.22294 * 180.02562 * 8 7 6 10 10 C 1.48311 * 121.16268 * 0.02562 * 9 8 7 11 11 C 1.39378 * 120.12329 * 309.70711 * 10 9 8 12 12 C 1.38010 * 119.87194 * 179.76260 * 11 10 9 13 13 C 1.38323 * 120.12308 * 0.51008 * 12 11 10 14 14 C 1.50704 * 119.87196 * 179.76298 * 13 12 11 15 15 O 1.42902 * 109.46978 * 244.97491 * 14 13 12 16 16 Si 1.86298 * 109.47075 * 4.97734 * 14 13 12 17 17 H 1.48503 * 109.47127 * 60.00178 * 16 14 13 18 18 H 1.48502 * 109.46963 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47083 * 299.99940 * 16 14 13 20 20 C 1.38328 * 120.25586 * 359.74315 * 13 12 11 21 21 C 1.38011 * 120.12148 * 359.97438 * 20 13 12 22 22 C 1.39833 * 117.68401 * 179.97438 * 9 8 7 23 23 C 1.38485 * 117.88648 * 359.97438 * 22 9 8 24 24 C 1.50704 * 119.95017 * 180.02562 * 23 22 9 25 25 F 1.39893 * 109.47189 * 89.99879 * 24 23 22 26 26 F 1.39904 * 109.46600 * 209.99932 * 24 23 22 27 27 F 1.39902 * 109.47141 * 329.99597 * 24 23 22 28 28 N 1.31895 * 120.09260 * 0.02562 * 23 22 9 29 29 N 1.28283 * 122.56901 * 359.97438 * 28 23 22 30 30 H 1.08995 * 109.47506 * 300.00658 * 1 2 3 31 31 H 1.09004 * 109.47020 * 60.00458 * 1 2 3 32 32 H 1.09003 * 109.47537 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47234 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46796 * 299.99679 * 3 2 1 35 35 H 1.08995 * 109.47464 * 59.99317 * 3 2 1 36 36 H 1.09003 * 109.46904 * 300.00591 * 4 2 1 37 37 H 1.09004 * 109.46978 * 59.99997 * 4 2 1 38 38 H 1.08994 * 109.47388 * 179.97438 * 4 2 1 39 39 H 1.08995 * 109.47062 * 300.00298 * 5 2 1 40 40 H 1.09002 * 109.46736 * 179.97438 * 5 2 1 41 41 H 1.09001 * 109.47517 * 59.99769 * 6 5 2 42 42 H 1.09000 * 109.47485 * 299.99993 * 6 5 2 43 43 H 1.08001 * 120.06216 * 0.02562 * 11 10 9 44 44 H 1.08003 * 119.93521 * 180.22494 * 12 11 10 45 45 H 1.09004 * 109.46833 * 124.97796 * 14 13 12 46 46 H 0.96700 * 113.99641 * 60.00617 * 15 14 13 47 47 H 1.07998 * 119.94066 * 179.97438 * 20 13 12 48 48 H 1.08005 * 120.06262 * 180.02562 * 21 20 13 49 49 H 1.08003 * 121.05801 * 180.26680 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4839 -0.8781 1.5213 6 6 1.9739 -2.3206 1.5214 7 8 2.4507 -2.9943 2.6880 8 6 2.0858 -4.2915 2.8421 9 6 2.5155 -5.0177 3.9633 10 6 3.3716 -4.3925 5.0006 11 6 4.5258 -3.7033 4.6328 12 6 5.3160 -3.1194 5.6019 13 6 4.9700 -3.2262 6.9369 14 6 5.8398 -2.5909 7.9909 15 8 6.4102 -3.6095 8.8152 16 14 7.2022 -1.6211 7.1699 17 1 6.6094 -0.5626 6.3134 18 1 8.0597 -0.9956 8.2086 19 1 8.0238 -2.5324 6.3335 20 6 3.8284 -3.9135 7.3082 21 6 3.0276 -4.4964 6.3472 22 6 2.1076 -6.3510 4.0691 23 6 1.3076 -6.8655 3.0626 24 6 0.8407 -8.2968 3.1301 25 9 -0.3798 -8.3575 3.8110 26 9 0.6767 -8.7953 1.8333 27 9 1.7921 -9.0661 3.8086 28 7 0.9538 -6.1046 2.0450 29 7 1.3219 -4.8804 1.9373 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 3.5739 1.7565 0.0005 34 1 2.1206 2.2703 -0.8901 35 1 2.1206 2.2704 0.8899 36 1 2.1207 -1.9060 -1.5210 37 1 2.1207 -0.3645 -2.4111 38 1 3.5740 -0.8779 -1.5212 39 1 2.1205 -0.3642 2.4112 40 1 3.5739 -0.8785 1.5211 41 1 2.3373 -2.8345 0.6314 42 1 0.8839 -2.3206 1.5213 43 1 4.7991 -3.6228 3.5910 44 1 6.2087 -2.5820 5.3178 45 1 5.2367 -1.9220 8.6049 46 1 6.9609 -4.2421 8.3341 47 1 3.5632 -3.9940 8.3520 48 1 2.1362 -5.0325 6.6381 49 1 2.4031 -6.9589 4.9115 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12296696_17781646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:30:30 Heat of formation + Delta-G solvation = -172.068545 kcal Electronic energy + Delta-G solvation = -35452.014468 eV Core-core repulsion = 30281.913745 eV Total energy + Delta-G solvation = -5170.100723 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 400.134 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -51.35585 -48.87874 -48.82291 -42.82545 -40.57190 -39.93149 -37.76360 -35.45946 -34.36056 -32.51440 -32.08420 -31.55539 -29.36814 -28.36055 -28.34157 -28.26017 -27.16960 -25.93631 -24.30319 -23.78843 -23.60913 -22.17575 -20.28717 -19.88166 -19.74562 -19.63581 -18.75223 -18.48078 -17.78964 -17.15089 -16.89015 -16.29779 -16.08087 -15.87624 -15.76637 -15.66340 -15.55129 -15.38856 -15.23511 -15.12736 -15.03916 -14.96026 -14.93227 -14.48326 -14.28776 -14.25207 -14.21012 -14.01388 -13.77836 -13.75066 -13.66451 -13.31080 -13.20606 -13.12760 -13.01458 -12.81569 -12.74574 -12.48737 -12.21831 -12.11457 -12.05443 -11.80827 -11.59951 -11.25276 -10.88044 -10.75583 -10.74758 -10.67738 -10.41568 -10.02808 -9.65273 -0.98660 -0.72044 0.15025 0.32854 1.04367 1.17000 1.37604 1.44142 1.51606 1.83264 1.90916 1.91550 1.95663 2.02336 2.25419 2.42151 2.56440 2.65891 2.83315 3.11184 3.12855 3.17692 3.47382 3.55713 3.64697 3.81576 3.91987 3.93953 3.99606 4.00487 4.09515 4.28778 4.38262 4.48422 4.53125 4.58782 4.79165 4.79810 4.80170 4.82848 4.84030 4.85044 4.85304 4.87148 4.96297 5.16854 5.23933 5.33529 5.42217 5.56178 5.64372 5.64970 5.77378 5.82889 6.70140 7.01287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.102 2.898 3 C -0.463 4.463 4 C -0.471 4.471 5 C -0.427 4.427 6 C 0.060 3.940 7 O -0.285 6.285 8 C 0.293 3.707 9 C -0.050 4.050 10 C -0.059 4.059 11 C -0.082 4.082 12 C -0.131 4.131 13 C -0.105 4.105 14 C -0.077 4.077 15 O -0.550 6.550 16 Si 0.973 3.027 17 H -0.257 1.257 18 H -0.277 1.277 19 H -0.251 1.251 20 C -0.093 4.093 21 C -0.093 4.093 22 C -0.029 4.029 23 C -0.057 4.057 24 C 0.542 3.458 25 F -0.168 7.168 26 F -0.169 7.169 27 F -0.160 7.160 28 N -0.177 5.177 29 N -0.303 5.303 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.390 0.610 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 3.419 1.830 4.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.291 2.709 3 C -0.570 4.570 4 C -0.577 4.577 5 C -0.508 4.508 6 C -0.014 4.014 7 O -0.188 6.188 8 C 0.109 3.891 9 C -0.062 4.062 10 C -0.060 4.060 11 C -0.100 4.100 12 C -0.148 4.148 13 C -0.106 4.106 14 C -0.188 4.188 15 O -0.357 6.357 16 Si 0.798 3.202 17 H -0.181 1.181 18 H -0.202 1.202 19 H -0.175 1.175 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.056 4.056 23 C -0.206 4.206 24 C 0.486 3.514 25 F -0.149 7.149 26 F -0.150 7.150 27 F -0.141 7.141 28 N -0.021 5.021 29 N -0.160 5.160 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.239 0.761 47 H 0.163 0.837 48 H 0.164 0.836 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.585 4.572 0.639 5.291 hybrid contribution 0.313 -0.907 0.607 1.136 sum 2.898 3.664 1.246 4.835 Atomic orbital electron populations 1.26416 1.22396 1.04369 1.04673 0.77826 0.64839 0.65212 0.63001 1.26253 1.06612 1.19393 1.04735 1.26396 1.06606 1.08274 1.16452 1.26796 1.07824 0.97674 1.18466 1.22969 1.00204 0.92840 0.85365 1.86441 1.68658 1.17278 1.46378 1.21930 0.89341 0.87297 0.90563 1.19209 0.99721 0.92964 0.94348 1.18281 0.95008 1.00894 0.91840 1.21153 0.93318 0.95447 1.00071 1.21118 1.00517 1.00614 0.92583 1.20578 0.96925 0.98854 0.94240 1.24984 1.02136 0.95480 0.96218 1.86508 1.68892 1.43109 1.37177 0.85341 0.77488 0.79163 0.78194 1.18141 1.20222 1.17464 1.21127 0.93276 0.96169 1.00479 1.21447 1.00153 0.98833 0.90676 1.22407 0.91087 0.93726 0.98358 1.22514 1.04119 0.96527 0.97439 1.17308 0.75399 0.84426 0.74311 1.93267 1.44943 1.96683 1.80009 1.93254 1.95329 1.88779 1.37645 1.93255 1.63972 1.76862 1.80016 1.72533 1.13358 0.98297 1.17945 1.73168 1.14494 1.03667 1.24702 0.91139 0.91011 0.91580 0.90945 0.90977 0.91041 0.91536 0.91027 0.90997 0.89079 0.88766 0.90352 0.90632 0.85208 0.84875 0.85436 0.76126 0.83750 0.83629 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.81 8.65 113.37 0.98 2.79 16 2 Si 1.10 -7.96 12.19 68.60 0.84 -7.12 16 3 C -0.46 2.47 8.65 113.37 0.98 3.45 16 4 C -0.47 1.99 8.65 113.37 0.98 2.97 16 5 C -0.43 2.13 4.82 71.98 0.35 2.47 16 6 C 0.06 -0.05 4.70 71.98 0.34 0.29 16 7 O -0.28 -0.71 8.69 -89.47 -0.78 -1.49 16 8 C 0.29 1.21 7.51 85.14 0.64 1.85 16 9 C -0.05 -0.04 5.51 -19.70 -0.11 -0.15 16 10 C -0.06 0.05 5.34 -20.05 -0.11 -0.05 16 11 C -0.08 0.07 8.87 22.49 0.20 0.27 16 12 C -0.13 0.28 8.65 22.24 0.19 0.48 16 13 C -0.11 0.30 5.36 -19.82 -0.11 0.19 16 14 C -0.08 0.32 2.80 71.24 0.20 0.51 16 15 O -0.55 1.47 12.83 -148.98 -1.91 -0.44 16 16 Si 0.97 -3.15 25.13 68.60 1.72 -1.43 16 17 H -0.26 0.49 7.11 99.48 0.71 1.20 16 18 H -0.28 -0.22 7.11 99.48 0.71 0.48 16 19 H -0.25 0.85 7.04 99.48 0.70 1.55 16 20 C -0.09 0.31 9.67 22.24 0.21 0.52 16 21 C -0.09 0.31 9.56 22.49 0.22 0.52 16 22 C -0.03 0.04 9.08 22.71 0.21 0.24 16 23 C -0.06 -0.20 6.37 42.61 0.27 0.07 16 24 C 0.54 1.66 3.44 71.24 0.25 1.91 16 25 F -0.17 -0.66 17.30 44.97 0.78 0.12 16 26 F -0.17 -1.10 17.05 44.97 0.77 -0.33 16 27 F -0.16 -0.12 16.50 44.97 0.74 0.62 16 28 N -0.18 -1.43 11.10 -47.72 -0.53 -1.96 16 29 N -0.30 -2.22 10.40 -169.69 -1.77 -3.98 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 31 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 32 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 33 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 37 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 38 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.09 -0.46 7.96 -2.39 -0.02 -0.48 16 40 H 0.09 -0.55 7.96 -2.39 -0.02 -0.57 16 41 H 0.08 -0.11 7.76 -2.39 -0.02 -0.13 16 42 H 0.08 -0.06 7.76 -2.39 -0.02 -0.08 16 43 H 0.13 -0.21 7.78 -2.91 -0.02 -0.24 16 44 H 0.13 -0.58 4.84 -2.91 -0.01 -0.60 16 45 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 46 H 0.39 -3.46 8.70 -74.06 -0.64 -4.10 16 47 H 0.14 -0.78 8.06 -2.91 -0.02 -0.81 16 48 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 49 H 0.20 -1.55 7.67 -2.91 -0.02 -1.57 16 Total: 0.00 -14.20 425.94 6.65 -7.55 By element: Atomic # 1 Polarization: -10.99 SS G_CDS: 1.10 Total: -9.89 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.69 Total: 18.35 kcal Atomic # 7 Polarization: -3.65 SS G_CDS: -2.30 Total: -5.95 kcal Atomic # 8 Polarization: 0.76 SS G_CDS: -2.69 Total: -1.93 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 2.29 Total: 0.41 kcal Atomic # 14 Polarization: -11.11 SS G_CDS: 2.56 Total: -8.55 kcal Total: -14.20 6.65 -7.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12296696_17781646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.521 kcal (2) G-P(sol) polarization free energy of solvation -14.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds