Wall clock time and date at job start Mon Mar 8 2021 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47093 * 2 1 4 4 C 1.50699 * 109.47106 * 239.99468 * 2 1 3 5 5 C 1.33055 * 122.53858 * 105.21245 * 4 2 1 6 6 S 1.75812 * 109.92777 * 180.24285 * 5 4 2 7 7 C 1.75849 * 91.15387 * 359.75416 * 6 5 4 8 8 C 1.34578 * 109.53996 * 359.97438 * 7 6 5 9 9 C 1.48363 * 122.76776 * 179.97438 * 8 7 6 10 10 C 1.39359 * 120.12581 * 310.02421 * 9 8 7 11 11 C 1.38007 * 119.88165 * 180.02562 * 10 9 8 12 12 C 1.38334 * 120.11887 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.87274 * 179.97438 * 12 11 10 14 14 H 1.08993 * 112.91004 * 11.24735 * 13 12 11 15 15 C 1.53962 * 113.66521 * 142.55145 * 13 12 11 16 16 C 1.53782 * 87.11063 * 139.88647 * 15 13 12 17 17 H 1.08996 * 113.68722 * 89.19879 * 16 15 13 18 18 O 1.42901 * 113.61110 * 220.08969 * 16 15 13 19 19 C 1.53781 * 87.08260 * 334.63747 * 16 15 13 20 20 C 1.38327 * 120.24819 * 0.27045 * 12 11 10 21 21 C 1.38015 * 120.12151 * 359.49593 * 20 12 11 22 22 H 0.96705 * 113.99848 * 60.00303 * 1 2 3 23 23 H 1.08998 * 109.46550 * 119.99602 * 2 1 3 24 24 H 1.48504 * 109.99856 * 298.67753 * 3 2 1 25 25 H 1.48505 * 109.99898 * 59.99514 * 3 2 1 26 26 H 1.07996 * 125.03657 * 0.02562 * 5 4 2 27 27 H 1.07996 * 125.22980 * 179.97438 * 7 6 5 28 28 H 1.08003 * 120.05452 * 0.02562 * 10 9 8 29 29 H 1.07995 * 119.94342 * 179.97438 * 11 10 9 30 30 H 1.08997 * 113.53543 * 25.33321 * 15 13 12 31 31 H 1.08998 * 113.73879 * 254.46919 * 15 13 12 32 32 H 0.96705 * 113.99992 * 277.49360 * 18 16 15 33 33 H 1.09002 * 113.61445 * 139.98212 * 19 16 15 34 34 H 1.09002 * 113.61408 * 270.79943 * 19 16 15 35 35 H 1.07999 * 119.94044 * 179.72159 * 20 12 11 36 36 H 1.08003 * 120.06368 * 180.22907 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4474 -0.0615 -2.2710 6 16 2.9179 -1.2075 -3.5185 7 6 2.3796 -2.5587 -2.5302 8 6 1.8950 -2.0974 -1.3626 9 6 1.3594 -2.9911 -0.3063 10 6 0.4173 -3.9666 -0.6268 11 6 -0.0779 -4.7948 0.3598 12 6 0.3598 -4.6583 1.6650 13 6 -0.1851 -5.5653 2.7381 14 1 -0.7581 -6.4010 2.3366 15 6 0.8634 -5.9829 3.7853 16 6 -0.2372 -5.8045 4.8444 17 1 -0.8251 -6.7051 5.0210 18 8 0.2244 -5.1972 6.0528 19 6 -0.9023 -4.8152 3.8729 20 6 1.2910 -3.6884 1.9898 21 6 1.7965 -2.8579 1.0103 22 1 -0.3933 0.4417 -0.7651 23 1 1.7922 -0.5138 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5614 2.4679 1.2085 26 1 2.5574 1.0105 -2.3406 27 1 2.4301 -3.5989 -2.8163 28 1 0.0753 -4.0742 -1.6456 29 1 -0.8083 -5.5508 0.1126 30 1 1.6850 -5.2736 3.8855 31 1 1.2040 -7.0128 3.6787 32 1 0.6437 -5.8145 6.6680 33 1 -1.9882 -4.9026 3.8361 34 1 -0.5645 -3.7864 3.9981 35 1 1.6259 -3.5833 3.0112 36 1 2.5264 -2.1034 1.2643 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12888846_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:06 Heat of formation + Delta-G solvation = 7.717149 kcal Electronic energy + Delta-G solvation = -20241.601869 eV Core-core repulsion = 17170.719053 eV Total energy + Delta-G solvation = -3070.882816 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26658 -40.27100 -38.67560 -37.03299 -35.92192 -32.51106 -31.95226 -30.37912 -27.53411 -26.70108 -25.78904 -23.86662 -23.47373 -22.16637 -20.26585 -19.85740 -19.19241 -18.69591 -17.48303 -17.02350 -16.59292 -16.51893 -16.05117 -15.67673 -15.61031 -15.06057 -14.76139 -14.46988 -14.16241 -14.09428 -13.90928 -13.56211 -13.46666 -13.42328 -13.31634 -12.70259 -12.42344 -12.17742 -12.07064 -11.83397 -11.71755 -11.53974 -11.33395 -10.74506 -10.55994 -10.03312 -9.76165 -9.65567 -8.95775 -4.98915 -0.17008 0.38103 0.56837 0.62039 0.95259 1.26284 1.54704 1.58623 1.94797 2.85437 3.23107 3.41774 3.56513 3.63926 3.74351 3.89565 3.93639 3.95149 4.04074 4.04979 4.12513 4.16499 4.41813 4.45269 4.49180 4.59094 4.66790 4.77376 4.80799 4.86709 4.97877 5.06338 5.11448 5.18295 5.20702 5.31716 5.36005 5.59960 5.72076 5.78281 6.11134 6.44132 6.70882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.057 4.057 3 Si 0.682 3.318 4 C -0.115 4.115 5 C -0.216 4.216 6 S 0.128 5.872 7 C -0.204 4.204 8 C -0.045 4.045 9 C -0.024 4.024 10 C -0.102 4.102 11 C -0.113 4.113 12 C -0.067 4.067 13 C -0.073 4.073 14 H 0.100 0.900 15 C -0.163 4.163 16 C 0.074 3.926 17 H 0.083 0.917 18 O -0.560 6.560 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.100 4.100 22 H 0.373 0.627 23 H 0.120 0.880 24 H -0.258 1.258 25 H -0.254 1.254 26 H 0.170 0.830 27 H 0.168 0.832 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.379 0.621 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -1.795 -0.863 2.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.326 6.326 2 C -0.170 4.170 3 Si 0.583 3.417 4 C -0.128 4.128 5 C -0.352 4.352 6 S 0.395 5.605 7 C -0.340 4.340 8 C -0.057 4.057 9 C -0.026 4.026 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.067 4.067 13 C -0.092 4.092 14 H 0.118 0.882 15 C -0.200 4.200 16 C 0.015 3.985 17 H 0.101 0.899 18 O -0.365 6.365 19 C -0.157 4.157 20 C -0.130 4.130 21 C -0.119 4.119 22 H 0.220 0.780 23 H 0.137 0.863 24 H -0.183 1.183 25 H -0.178 1.178 26 H 0.188 0.812 27 H 0.185 0.815 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.529 -0.583 -2.106 3.342 hybrid contribution -1.474 -0.868 0.889 1.928 sum 1.055 -1.450 -1.217 2.167 Atomic orbital electron populations 1.86651 1.17295 1.79777 1.48862 1.24908 0.84167 1.10154 0.97750 0.95123 0.91540 0.74561 0.80520 1.19234 1.02655 0.93293 0.97647 1.25507 1.07744 1.03810 0.98133 1.84392 1.61167 0.95957 1.18947 1.25835 1.07438 1.03074 0.97664 1.17583 1.01708 0.92089 0.94308 1.18285 0.97062 0.95214 0.92059 1.21129 0.96589 0.94988 0.99361 1.20946 1.00147 0.99647 0.92336 1.19639 0.96764 0.96405 0.93889 1.21325 0.97870 0.97611 0.92345 0.88160 1.23861 0.97970 1.02462 0.95725 1.23362 0.95453 0.96290 0.83367 0.89948 1.86541 1.80060 1.39470 1.30465 1.23169 1.00109 0.99763 0.92650 1.20933 0.97262 0.95413 0.99357 1.21133 0.99825 0.99020 0.91881 0.77980 0.86273 1.18334 1.17829 0.81248 0.81466 0.86094 0.85946 0.88769 0.90966 0.77391 0.90580 0.88839 0.85714 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.15 12.88 -35.23 -0.45 -1.60 16 2 C -0.06 -0.04 2.25 36.00 0.08 0.05 16 3 Si 0.68 -0.38 30.48 -169.99 -5.18 -5.56 16 4 C -0.12 -0.09 5.15 -106.00 -0.55 -0.64 16 5 C -0.22 0.02 9.64 28.93 0.28 0.30 16 6 S 0.13 -0.02 23.32 -107.50 -2.51 -2.53 16 7 C -0.20 -0.11 10.85 29.44 0.32 0.21 16 8 C -0.04 -0.07 5.36 -106.60 -0.57 -0.64 16 9 C -0.02 -0.05 5.30 -104.90 -0.56 -0.61 16 10 C -0.10 -0.18 9.59 -39.25 -0.38 -0.55 16 11 C -0.11 -0.15 9.69 -39.63 -0.38 -0.54 16 12 C -0.07 -0.09 5.30 -104.55 -0.55 -0.65 16 13 C -0.07 0.00 3.99 -90.86 -0.36 -0.36 16 14 H 0.10 -0.11 8.09 -51.93 -0.42 -0.53 16 15 C -0.16 0.07 7.29 -25.82 -0.19 -0.12 16 16 C 0.07 -0.01 5.22 -25.92 -0.14 -0.14 16 17 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 18 O -0.56 -0.61 13.67 -35.23 -0.48 -1.09 16 19 C -0.12 -0.08 7.37 -25.92 -0.19 -0.27 16 20 C -0.11 -0.18 8.58 -39.63 -0.34 -0.51 16 21 C -0.10 -0.17 8.33 -39.25 -0.33 -0.50 16 22 H 0.37 -0.23 8.70 45.56 0.40 0.17 16 23 H 0.12 0.05 5.10 -51.93 -0.26 -0.22 16 24 H -0.26 -0.24 6.84 56.52 0.39 0.15 16 25 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 26 H 0.17 -0.27 5.65 -52.49 -0.30 -0.57 16 27 H 0.17 -0.13 8.06 -52.49 -0.42 -0.56 16 28 H 0.12 0.07 8.06 -52.48 -0.42 -0.35 16 29 H 0.12 -0.04 8.05 -52.49 -0.42 -0.47 16 30 H 0.09 0.02 6.31 -51.93 -0.33 -0.31 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 32 H 0.38 -1.14 9.12 45.56 0.42 -0.72 16 33 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.09 0.18 7.71 -51.93 -0.40 -0.22 16 35 H 0.13 0.08 6.66 -52.49 -0.35 -0.27 16 36 H 0.12 0.03 6.57 -52.48 -0.34 -0.31 16 LS Contribution 310.71 15.07 4.68 4.68 Total: 0.00 -5.89 310.71 -11.13 -17.02 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -3.34 Total: -5.95 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.85 Total: -4.96 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: -0.94 Total: -2.69 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: -5.18 Total: -5.56 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.51 Total: -2.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -5.89 -11.13 -17.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12888846_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -5.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds