Wall clock time and date at job start Mon Mar 8 2021 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47093 * 2 1 4 4 C 1.50699 * 109.47106 * 239.99468 * 2 1 3 5 5 C 1.33055 * 122.53858 * 105.21245 * 4 2 1 6 6 S 1.75812 * 109.92777 * 180.24285 * 5 4 2 7 7 C 1.75849 * 91.15387 * 359.75416 * 6 5 4 8 8 C 1.34578 * 109.53996 * 359.97438 * 7 6 5 9 9 C 1.48363 * 122.76776 * 179.97438 * 8 7 6 10 10 C 1.39359 * 120.12581 * 310.02421 * 9 8 7 11 11 C 1.38007 * 119.88165 * 180.02562 * 10 9 8 12 12 C 1.38334 * 120.11887 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.87274 * 179.97438 * 12 11 10 14 14 H 1.08993 * 112.91004 * 11.24735 * 13 12 11 15 15 C 1.53962 * 113.66521 * 142.55145 * 13 12 11 16 16 C 1.53782 * 87.11063 * 139.88647 * 15 13 12 17 17 H 1.08996 * 113.68722 * 89.19879 * 16 15 13 18 18 O 1.42901 * 113.61110 * 220.08969 * 16 15 13 19 19 C 1.53781 * 87.08260 * 334.63747 * 16 15 13 20 20 C 1.38327 * 120.24819 * 0.27045 * 12 11 10 21 21 C 1.38015 * 120.12151 * 359.49593 * 20 12 11 22 22 H 0.96705 * 113.99848 * 60.00303 * 1 2 3 23 23 H 1.08998 * 109.46550 * 119.99602 * 2 1 3 24 24 H 1.48504 * 109.99856 * 298.67753 * 3 2 1 25 25 H 1.48505 * 109.99898 * 59.99514 * 3 2 1 26 26 H 1.07996 * 125.03657 * 0.02562 * 5 4 2 27 27 H 1.07996 * 125.22980 * 179.97438 * 7 6 5 28 28 H 1.08003 * 120.05452 * 0.02562 * 10 9 8 29 29 H 1.07995 * 119.94342 * 179.97438 * 11 10 9 30 30 H 1.08997 * 113.53543 * 25.33321 * 15 13 12 31 31 H 1.08998 * 113.73879 * 254.46919 * 15 13 12 32 32 H 0.96705 * 113.99992 * 277.49360 * 18 16 15 33 33 H 1.09002 * 113.61445 * 139.98212 * 19 16 15 34 34 H 1.09002 * 113.61408 * 270.79943 * 19 16 15 35 35 H 1.07999 * 119.94044 * 179.72159 * 20 12 11 36 36 H 1.08003 * 120.06368 * 180.22907 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4474 -0.0615 -2.2710 6 16 2.9179 -1.2075 -3.5185 7 6 2.3796 -2.5587 -2.5302 8 6 1.8950 -2.0974 -1.3626 9 6 1.3594 -2.9911 -0.3063 10 6 0.4173 -3.9666 -0.6268 11 6 -0.0779 -4.7948 0.3598 12 6 0.3598 -4.6583 1.6650 13 6 -0.1851 -5.5653 2.7381 14 1 -0.7581 -6.4010 2.3366 15 6 0.8634 -5.9829 3.7853 16 6 -0.2372 -5.8045 4.8444 17 1 -0.8251 -6.7051 5.0210 18 8 0.2244 -5.1972 6.0528 19 6 -0.9023 -4.8152 3.8729 20 6 1.2910 -3.6884 1.9898 21 6 1.7965 -2.8579 1.0103 22 1 -0.3933 0.4417 -0.7651 23 1 1.7922 -0.5138 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5614 2.4679 1.2085 26 1 2.5574 1.0105 -2.3406 27 1 2.4301 -3.5989 -2.8163 28 1 0.0753 -4.0742 -1.6456 29 1 -0.8083 -5.5508 0.1126 30 1 1.6850 -5.2736 3.8855 31 1 1.2040 -7.0128 3.6787 32 1 0.6437 -5.8145 6.6680 33 1 -1.9882 -4.9026 3.8361 34 1 -0.5645 -3.7864 3.9981 35 1 1.6259 -3.5833 3.0112 36 1 2.5264 -2.1034 1.2643 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12888846_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:06 Heat of formation + Delta-G solvation = 11.794270 kcal Electronic energy + Delta-G solvation = -20241.425072 eV Core-core repulsion = 17170.719053 eV Total energy + Delta-G solvation = -3070.706019 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29712 -40.28249 -38.71906 -37.11375 -35.94771 -32.55012 -32.02493 -30.41700 -27.55931 -26.69693 -25.81188 -23.89820 -23.52764 -22.20144 -20.26840 -19.90426 -19.21581 -18.70396 -17.52507 -17.07300 -16.59750 -16.55243 -16.08922 -15.72677 -15.66232 -15.08914 -14.82075 -14.49940 -14.19681 -14.13146 -13.93435 -13.62518 -13.50609 -13.46094 -13.34327 -12.73109 -12.44614 -12.22658 -12.13495 -11.88871 -11.73535 -11.56997 -11.31481 -10.72811 -10.61530 -10.06170 -9.85374 -9.66608 -8.99591 -4.97373 -0.19280 0.31997 0.47700 0.63159 0.94531 1.25696 1.52319 1.54858 1.91512 2.77734 3.28985 3.41257 3.58401 3.63911 3.73519 3.92149 3.94796 3.95396 4.02601 4.04939 4.06983 4.16423 4.41308 4.45830 4.50091 4.55155 4.65256 4.78138 4.79251 4.84022 4.97545 5.04203 5.06416 5.16407 5.17935 5.28521 5.35598 5.52564 5.64521 5.72309 6.04509 6.46911 6.89286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.068 4.068 3 Si 0.765 3.235 4 C -0.123 4.123 5 C -0.216 4.216 6 S 0.145 5.855 7 C -0.210 4.210 8 C -0.060 4.060 9 C -0.034 4.034 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.075 4.075 13 C -0.069 4.069 14 H 0.115 0.885 15 C -0.158 4.158 16 C 0.076 3.924 17 H 0.101 0.899 18 O -0.583 6.583 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.112 4.112 22 H 0.383 0.617 23 H 0.117 0.883 24 H -0.272 1.272 25 H -0.301 1.301 26 H 0.185 0.815 27 H 0.177 0.823 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.395 0.605 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -2.281 -1.411 3.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.179 4.179 3 Si 0.669 3.331 4 C -0.136 4.136 5 C -0.352 4.352 6 S 0.413 5.587 7 C -0.345 4.345 8 C -0.072 4.072 9 C -0.036 4.036 10 C -0.132 4.132 11 C -0.138 4.138 12 C -0.075 4.075 13 C -0.087 4.087 14 H 0.133 0.867 15 C -0.196 4.196 16 C 0.017 3.983 17 H 0.119 0.881 18 O -0.391 6.391 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.130 4.130 22 H 0.231 0.769 23 H 0.134 0.866 24 H -0.198 1.198 25 H -0.229 1.229 26 H 0.202 0.798 27 H 0.194 0.806 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.788 -1.096 -2.665 4.010 hybrid contribution -1.568 -0.709 1.075 2.029 sum 1.220 -1.805 -1.590 2.697 Atomic orbital electron populations 1.86614 1.18344 1.80290 1.49713 1.25142 0.83533 1.11429 0.97833 0.94168 0.90170 0.71754 0.77000 1.19220 1.03293 0.93154 0.97956 1.25699 1.07072 1.04606 0.97808 1.84331 1.60615 0.95382 1.18417 1.26018 1.07052 1.03920 0.97556 1.17694 1.02456 0.92449 0.94617 1.18451 0.97257 0.95500 0.92378 1.21322 0.96735 0.95172 0.99956 1.21189 1.00383 0.99952 0.92270 1.19847 0.96688 0.96579 0.94413 1.21361 0.97955 0.97578 0.91817 0.86720 1.23804 0.97575 1.02789 0.95416 1.23441 0.95519 0.96373 0.82949 0.88146 1.86496 1.80412 1.40944 1.31243 1.23180 1.00443 0.99090 0.93741 1.21072 0.97583 0.95694 0.99540 1.21313 1.00231 0.99388 0.92042 0.76854 0.86562 1.19804 1.22880 0.79799 0.80573 0.85325 0.84383 0.89733 0.89843 0.75535 0.90212 0.90738 0.85467 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.93 12.88 -148.98 -1.92 -4.85 16 2 C -0.07 -0.13 2.25 71.24 0.16 0.03 16 3 Si 0.76 -0.69 30.48 68.60 2.09 1.40 16 4 C -0.12 -0.22 5.15 -20.75 -0.11 -0.33 16 5 C -0.22 0.16 9.64 66.66 0.64 0.80 16 6 S 0.15 -0.13 23.32 -56.49 -1.32 -1.45 16 7 C -0.21 -0.23 10.85 66.98 0.73 0.50 16 8 C -0.06 -0.21 5.36 -21.15 -0.11 -0.32 16 9 C -0.03 -0.17 5.30 -20.04 -0.11 -0.28 16 10 C -0.11 -0.47 9.59 22.48 0.22 -0.25 16 11 C -0.12 -0.37 9.69 22.24 0.22 -0.15 16 12 C -0.08 -0.26 5.30 -19.82 -0.10 -0.36 16 13 C -0.07 0.00 3.99 -10.95 -0.04 -0.04 16 14 H 0.11 -0.35 8.09 -2.39 -0.02 -0.37 16 15 C -0.16 0.14 7.29 31.18 0.23 0.37 16 16 C 0.08 -0.03 5.22 31.12 0.16 0.13 16 17 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 18 O -0.58 -1.39 13.67 -148.98 -2.04 -3.43 16 19 C -0.13 -0.24 7.37 31.12 0.23 -0.01 16 20 C -0.12 -0.53 8.58 22.24 0.19 -0.34 16 21 C -0.11 -0.52 8.33 22.49 0.19 -0.34 16 22 H 0.38 -0.17 8.70 -74.05 -0.64 -0.81 16 23 H 0.12 0.23 5.10 -2.39 -0.01 0.22 16 24 H -0.27 -0.35 6.84 99.48 0.68 0.33 16 25 H -0.30 -2.09 7.11 99.48 0.71 -1.38 16 26 H 0.19 -0.78 5.65 -2.91 -0.02 -0.80 16 27 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 28 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 29 H 0.14 -0.13 8.05 -2.91 -0.02 -0.16 16 30 H 0.08 0.09 6.31 -2.39 -0.02 0.08 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.39 -2.40 9.12 -74.05 -0.68 -3.08 16 33 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.07 0.42 7.71 -2.39 -0.02 0.40 16 35 H 0.13 0.38 6.66 -2.91 -0.02 0.37 16 36 H 0.13 0.25 6.57 -2.91 -0.02 0.23 16 Total: 0.00 -13.81 310.71 -0.88 -14.69 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: -0.18 Total: -5.77 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 2.48 Total: -0.59 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -3.96 Total: -8.28 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.09 Total: 1.40 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.32 Total: -1.45 kcal Total: -13.81 -0.88 -14.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12888846_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.481 kcal (2) G-P(sol) polarization free energy of solvation -13.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds