Wall clock time and date at job start Mon Mar 8 2021 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47176 * 2 1 4 4 C 1.52992 * 109.47182 * 239.99788 * 2 1 3 5 5 O 1.45201 * 109.47023 * 119.99591 * 2 1 3 6 6 C 1.34640 * 116.99574 * 60.00142 * 5 2 1 7 7 O 1.21509 * 120.00422 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99783 * 179.97438 * 6 5 2 9 9 C 1.46507 * 120.00036 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.84768 * 336.19681 * 9 8 6 11 11 C 1.53778 * 113.68956 * 107.46489 * 9 8 6 12 12 C 1.53782 * 87.08247 * 89.12715 * 11 9 8 13 13 H 1.09003 * 113.69061 * 270.87379 * 12 11 9 14 14 C 1.50698 * 113.61313 * 139.97871 * 12 11 9 15 15 C 1.37993 * 119.93383 * 142.50523 * 14 12 11 16 16 C 1.39378 * 119.87148 * 179.97438 * 15 14 12 17 17 C 1.48372 * 120.12201 * 180.02562 * 16 15 14 18 18 C 1.34570 * 122.77104 * 310.00253 * 17 16 15 19 19 S 1.75847 * 109.54310 * 179.97438 * 18 17 16 20 20 C 1.75808 * 91.15300 * 0.02562 * 19 18 17 21 21 C 1.33054 * 109.93177 * 359.97438 * 20 19 18 22 22 C 1.50695 * 122.54579 * 179.73176 * 21 20 19 23 23 O 1.42911 * 109.47424 * 105.02388 * 22 21 20 24 24 Si 1.86292 * 109.47168 * 345.02511 * 22 21 20 25 25 C 1.39337 * 119.75970 * 0.27652 * 16 15 14 26 26 C 1.38036 * 119.87071 * 359.47321 * 25 16 15 27 27 C 1.38306 * 120.12197 * 0.52641 * 26 25 16 28 28 C 1.53774 * 113.61604 * 204.99972 * 9 8 6 29 29 H 1.09006 * 109.47244 * 300.00461 * 1 2 3 30 30 H 1.09001 * 109.46625 * 60.00018 * 1 2 3 31 31 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47124 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47079 * 299.99890 * 3 2 1 34 34 H 1.08997 * 109.47183 * 59.99834 * 3 2 1 35 35 H 1.09003 * 109.47698 * 300.00060 * 4 2 1 36 36 H 1.08998 * 109.47686 * 60.00423 * 4 2 1 37 37 H 1.09013 * 109.47353 * 180.02562 * 4 2 1 38 38 H 0.96999 * 120.00502 * 0.02562 * 8 6 5 39 39 H 1.09004 * 113.61422 * 334.58223 * 11 9 8 40 40 H 1.09003 * 113.61640 * 203.68054 * 11 9 8 41 41 H 1.07995 * 120.06730 * 0.02562 * 15 14 12 42 42 H 1.07998 * 125.22667 * 0.02562 * 18 17 16 43 43 H 1.07998 * 125.03976 * 180.02562 * 20 19 18 44 44 H 1.09001 * 109.47559 * 225.02347 * 22 21 20 45 45 H 0.96704 * 113.99500 * 300.00251 * 23 22 21 46 46 H 1.48506 * 110.00171 * 58.67753 * 24 22 21 47 47 H 1.48499 * 110.00317 * 179.97438 * 24 22 21 48 48 H 1.08001 * 120.06612 * 179.69850 * 25 16 15 49 49 H 1.08002 * 119.93963 * 180.23213 * 26 25 16 50 50 H 1.07999 * 119.87517 * 179.70946 * 27 26 25 51 51 H 1.08999 * 113.61621 * 156.25060 * 28 9 8 52 52 H 1.09009 * 113.61565 * 25.35266 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0679 -2.6656 2.4167 9 6 1.6738 -4.0668 2.5833 10 1 0.7590 -4.3159 2.0456 11 6 2.8200 -5.0637 2.3440 12 6 3.1494 -4.9233 3.8395 13 1 3.8475 -4.1158 4.0603 14 6 3.5315 -6.2237 4.4981 15 6 4.5212 -6.2439 5.4596 16 6 4.8732 -7.4473 6.0683 17 6 5.9360 -7.4754 7.1032 18 6 7.1430 -6.9080 6.9233 19 16 8.1253 -7.1464 8.3621 20 6 6.8211 -8.0228 9.1506 21 6 5.7668 -8.0914 8.3419 22 6 4.4891 -8.7881 8.7329 23 8 3.4913 -7.8137 9.0449 24 14 4.7979 -9.8603 10.2247 25 6 4.2269 -8.6248 5.6977 26 6 3.2349 -8.5920 4.7385 27 6 2.8896 -7.3950 4.1378 28 6 1.6754 -4.5373 4.0473 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 2.6275 -2.2368 3.0830 39 1 3.6013 -4.6812 1.6871 40 1 2.4802 -6.0606 2.0634 41 1 5.0214 -5.3290 5.7405 42 1 7.4593 -6.3858 6.0324 43 1 6.8683 -8.4425 10.1446 44 1 4.1451 -9.4080 7.9049 45 1 3.7305 -7.2256 9.7744 46 1 5.2976 -9.0316 11.3512 47 1 3.5452 -10.5525 10.6208 48 1 4.4992 -9.5609 6.1627 49 1 2.7307 -9.5035 4.4531 50 1 2.1161 -7.3747 3.3844 51 1 1.0226 -5.3904 4.2325 52 1 1.5324 -3.7299 4.7656 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12888846_14315990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:06:00 Heat of formation + Delta-G solvation = -17.865659 kcal Electronic energy + Delta-G solvation = -33116.080692 eV Core-core repulsion = 28754.066184 eV Total energy + Delta-G solvation = -4362.014508 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.154 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.02491 -41.22486 -40.31560 -38.84583 -37.79960 -37.02837 -35.38890 -34.21663 -32.61476 -31.79012 -30.34163 -28.38977 -28.32528 -27.34698 -26.71551 -26.29722 -24.70557 -23.83927 -22.75089 -22.31325 -21.19269 -20.36738 -19.68133 -19.38299 -18.82892 -17.74857 -17.60170 -17.30747 -17.19476 -16.74357 -16.56020 -16.26502 -16.06937 -15.78230 -15.55576 -15.40842 -14.97615 -14.71602 -14.67503 -14.43107 -14.33570 -14.24333 -13.94010 -13.63069 -13.61354 -13.49523 -13.38386 -13.25025 -13.00116 -12.94402 -12.89127 -12.79262 -12.72579 -12.49805 -12.34923 -12.21067 -11.96217 -11.75361 -11.69683 -11.57747 -11.42395 -11.24206 -11.12911 -10.59656 -10.22331 -10.12196 -9.70374 -9.58243 -9.02966 -4.95366 -0.16497 0.38531 0.49295 0.64270 0.96201 1.10110 1.27840 1.54344 1.57399 1.69781 1.93135 2.83119 3.08110 3.42773 3.43675 3.61494 3.67094 3.71879 3.77584 3.82588 3.92064 3.94014 3.97124 4.03450 4.06618 4.18883 4.23503 4.42942 4.45338 4.46980 4.54643 4.58569 4.59141 4.61456 4.71584 4.74204 4.76038 4.80287 4.80866 4.85423 4.87333 4.92495 4.99529 5.05904 5.11882 5.13468 5.15005 5.24322 5.24951 5.29540 5.31536 5.44374 5.57278 5.60016 5.68421 5.74631 6.09973 6.35084 6.48756 7.30138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.133 3.867 10 H 0.095 0.905 11 C -0.140 4.140 12 C -0.066 4.066 13 H 0.105 0.895 14 C -0.071 4.071 15 C -0.113 4.113 16 C -0.028 4.028 17 C -0.059 4.059 18 C -0.210 4.210 19 S 0.141 5.859 20 C -0.217 4.217 21 C -0.122 4.122 22 C -0.066 4.066 23 O -0.541 6.541 24 Si 0.762 3.238 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.124 4.124 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.120 0.880 45 H 0.382 0.618 46 H -0.275 1.275 47 H -0.300 1.300 48 H 0.131 0.869 49 H 0.139 0.861 50 H 0.136 0.864 51 H 0.106 0.894 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 0.137 1.488 3.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.029 3.971 10 H 0.113 0.887 11 C -0.178 4.178 12 C -0.084 4.084 13 H 0.123 0.877 14 C -0.071 4.071 15 C -0.131 4.131 16 C -0.031 4.031 17 C -0.071 4.071 18 C -0.346 4.346 19 S 0.408 5.592 20 C -0.353 4.353 21 C -0.135 4.135 22 C -0.177 4.177 23 O -0.348 6.348 24 Si 0.667 3.333 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.193 0.807 43 H 0.201 0.799 44 H 0.138 0.862 45 H 0.231 0.769 46 H -0.201 1.201 47 H -0.228 1.228 48 H 0.149 0.851 49 H 0.156 0.844 50 H 0.154 0.846 51 H 0.124 0.876 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.374 -0.056 1.806 4.733 hybrid contribution -1.566 0.829 0.083 1.773 sum 2.809 0.773 1.889 3.472 Atomic orbital electron populations 1.22476 0.94013 1.03713 1.03533 1.22364 0.94491 0.92584 0.81478 1.21893 1.02455 0.90849 1.04269 1.22472 1.01619 1.02258 0.97358 1.86312 1.71532 1.23227 1.47339 1.18302 0.78561 0.80723 0.82428 1.90905 1.42191 1.71039 1.44133 1.44374 1.54910 1.11834 1.23160 1.21847 0.98621 0.78158 0.98473 0.88732 1.23582 0.98205 1.00245 0.95793 1.21571 0.97201 0.94695 0.94957 0.87714 1.19671 0.95931 0.95065 0.96403 1.21166 0.97990 0.97155 0.96776 1.18426 0.95450 0.93876 0.95301 1.17709 0.93958 1.01129 0.94325 1.26001 0.97366 1.07674 1.03537 1.84361 1.15913 1.51987 1.06895 1.25697 0.97144 1.07328 1.05089 1.19227 0.97163 1.02899 0.94201 1.25113 0.86566 0.95464 1.10554 1.86611 1.43309 1.48180 1.56726 0.94172 0.82621 0.81872 0.74657 1.21364 0.96629 0.97771 0.98061 1.21323 0.97315 0.98868 0.96434 1.21258 1.00352 0.92047 1.00380 1.23402 0.96004 1.02173 0.94623 0.91950 0.89421 0.91776 0.91182 0.88264 0.91189 0.91785 0.89418 0.91964 0.74689 0.91428 0.87795 0.85795 0.80716 0.79901 0.86249 0.76881 1.20104 1.22819 0.85096 0.84364 0.84627 0.87600 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 2 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 3 C -0.14 0.25 8.85 71.98 0.64 0.88 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 5 O -0.37 -2.20 9.94 -55.49 -0.55 -2.75 16 6 C 0.65 4.67 8.06 129.79 1.05 5.72 16 7 O -0.59 -7.41 11.48 19.81 0.23 -7.18 16 8 N -0.68 -0.74 5.27 -567.61 -2.99 -3.73 16 9 C 0.13 -0.04 4.32 45.51 0.20 0.16 16 10 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 11 C -0.14 0.22 7.25 31.12 0.23 0.44 16 12 C -0.07 0.18 3.86 -11.01 -0.04 0.14 16 13 H 0.10 -0.44 8.09 -2.39 -0.02 -0.46 16 14 C -0.07 -0.03 5.28 -19.90 -0.11 -0.14 16 15 C -0.11 -0.24 9.25 22.49 0.21 -0.03 16 16 C -0.03 -0.09 5.30 -20.04 -0.11 -0.19 16 17 C -0.06 -0.12 5.36 -21.15 -0.11 -0.24 16 18 C -0.21 -0.04 10.85 66.98 0.73 0.68 16 19 S 0.14 -0.21 23.32 -56.49 -1.32 -1.53 16 20 C -0.22 0.34 9.64 66.66 0.64 0.98 16 21 C -0.12 -0.06 5.15 -20.75 -0.11 -0.17 16 22 C -0.07 -0.02 2.25 71.23 0.16 0.14 16 23 O -0.54 -1.93 12.88 -148.98 -1.92 -3.85 16 24 Si 0.76 -1.53 30.49 68.60 2.09 0.56 16 25 C -0.12 -0.26 8.33 22.49 0.19 -0.08 16 26 C -0.12 -0.11 10.03 22.24 0.22 0.11 16 27 C -0.12 -0.03 8.60 22.31 0.19 0.16 16 28 C -0.12 0.42 7.29 31.12 0.23 0.64 16 29 H 0.06 0.18 8.14 -2.38 -0.02 0.17 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 32 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 36 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.42 -1.34 8.81 -92.71 -0.82 -2.16 16 39 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 40 H 0.10 -0.27 6.30 -2.39 -0.02 -0.28 16 41 H 0.12 0.04 8.05 -2.91 -0.02 0.01 16 42 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 43 H 0.18 -0.90 5.66 -2.91 -0.02 -0.91 16 44 H 0.12 -0.01 5.08 -2.39 -0.01 -0.03 16 45 H 0.38 -0.75 8.70 -74.05 -0.64 -1.39 16 46 H -0.27 -0.16 6.84 99.48 0.68 0.52 16 47 H -0.30 -1.72 7.11 99.48 0.71 -1.02 16 48 H 0.13 -0.07 6.55 -2.91 -0.02 -0.09 16 49 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 50 H 0.14 -0.41 6.64 -2.91 -0.02 -0.43 16 51 H 0.11 -0.39 7.72 -2.39 -0.02 -0.40 16 52 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 Total: 0.00 -16.35 425.11 0.44 -15.91 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -0.49 Total: -6.96 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.39 Total: 9.53 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -2.99 Total: -3.73 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -2.24 Total: -13.78 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: 2.09 Total: 0.56 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.32 Total: -1.53 kcal Total: -16.35 0.44 -15.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12888846_14315990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.958 kcal (2) G-P(sol) polarization free energy of solvation -16.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds