Wall clock time and date at job start Mon Mar 8 2021 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40067 * 126.13163 * 2 1 4 4 C 1.30885 * 108.51196 * 179.70076 * 3 2 1 5 5 C 1.50694 * 125.70675 * 180.26299 * 4 3 2 6 6 O 1.42899 * 109.47058 * 180.21084 * 5 4 3 7 7 Si 1.63098 * 113.99885 * 179.97438 * 6 5 4 8 8 C 1.86297 * 109.47619 * 300.00127 * 7 6 5 9 9 C 1.86302 * 109.47182 * 60.00192 * 7 6 5 10 10 C 1.86307 * 109.47276 * 179.97438 * 7 6 5 11 11 C 1.53005 * 109.46683 * 60.00048 * 10 7 6 12 12 C 1.52997 * 109.47311 * 180.02562 * 10 7 6 13 13 C 1.52998 * 109.47129 * 300.00443 * 10 7 6 14 14 C 1.39534 * 108.58494 * 0.44183 * 4 3 2 15 15 C 1.36254 * 126.12724 * 179.97438 * 2 1 3 16 16 C 1.47988 * 126.34124 * 0.02562 * 15 2 1 17 17 C 1.34737 * 122.79424 * 311.35957 * 16 15 2 18 18 S 1.75850 * 109.52826 * 180.02562 * 17 16 15 19 19 C 1.75804 * 91.17713 * 359.97438 * 18 17 16 20 20 C 1.33011 * 109.97411 * 359.72957 * 19 18 17 21 21 C 1.50701 * 122.54664 * 180.24210 * 20 19 18 22 22 O 1.42897 * 109.47525 * 105.16735 * 21 20 19 23 23 Si 1.86301 * 109.46655 * 345.16594 * 21 20 19 24 24 H 1.48498 * 109.47123 * 60.00495 * 23 21 20 25 25 H 1.48504 * 109.46847 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47305 * 300.00367 * 23 21 20 27 27 H 1.09002 * 109.46684 * 274.78479 * 1 2 3 28 28 H 1.09002 * 109.47148 * 34.77475 * 1 2 3 29 29 H 1.08992 * 109.47759 * 154.77896 * 1 2 3 30 30 H 1.09004 * 109.47299 * 300.21198 * 5 4 3 31 31 H 1.09002 * 109.47287 * 60.20752 * 5 4 3 32 32 H 1.09001 * 109.46853 * 59.99820 * 8 7 6 33 33 H 1.08996 * 109.47636 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47237 * 300.00252 * 8 7 6 35 35 H 1.09008 * 109.46897 * 59.99625 * 9 7 6 36 36 H 1.09000 * 109.47574 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47027 * 300.00018 * 9 7 6 38 38 H 1.09000 * 109.46668 * 60.00418 * 11 10 7 39 39 H 1.09001 * 109.46888 * 180.02562 * 11 10 7 40 40 H 1.09000 * 109.47145 * 300.00337 * 11 10 7 41 41 H 1.09004 * 109.46925 * 59.99969 * 12 10 7 42 42 H 1.09001 * 109.47190 * 180.02562 * 12 10 7 43 43 H 1.08995 * 109.47027 * 300.00238 * 12 10 7 44 44 H 1.09009 * 109.47277 * 59.99583 * 13 10 7 45 45 H 1.08992 * 109.47315 * 179.97438 * 13 10 7 46 46 H 1.09004 * 109.47031 * 299.99984 * 13 10 7 47 47 H 1.07999 * 126.08145 * 179.81496 * 14 4 3 48 48 H 1.07994 * 125.23675 * 0.02562 * 17 16 15 49 49 H 1.07998 * 125.01657 * 180.02562 * 19 18 17 50 50 H 1.08999 * 109.46955 * 225.17317 * 21 20 19 51 51 H 0.96702 * 113.99985 * 300.00516 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2909 1.1313 0.0000 4 6 3.5384 0.7351 0.0065 5 6 4.7470 1.6351 0.0144 6 8 5.9337 0.8391 0.0151 7 14 7.3146 1.7069 0.0228 8 6 7.3780 2.7868 -1.4939 9 6 7.3683 2.7750 1.5483 10 6 8.7751 0.5501 0.0237 11 6 8.7312 -0.3275 -1.2288 12 6 10.0705 1.3642 0.0316 13 6 8.7228 -0.3363 1.2696 14 6 3.5619 -0.6600 0.0007 15 6 2.2684 -1.1005 0.0005 16 6 1.8226 -2.5117 0.0006 17 6 0.8888 -2.9820 0.8505 18 16 0.6281 -4.6946 0.5483 19 6 1.8223 -4.6858 -0.7419 20 6 2.3295 -3.4643 -0.8832 21 6 3.3768 -3.1359 -1.9158 22 8 2.7762 -2.4080 -2.9888 23 14 4.1167 -4.7141 -2.5735 24 1 3.0501 -5.5392 -3.1955 25 1 5.1484 -4.3905 -3.5915 26 1 4.7409 -5.4706 -1.4585 27 1 -0.3633 0.0857 1.0241 28 1 -0.3633 0.8441 -0.5861 29 1 -0.3634 -0.9296 -0.4378 30 1 4.7345 2.2681 -0.8729 31 1 4.7285 2.2605 0.9070 32 1 6.5236 3.4636 -1.4939 33 1 8.3007 3.3671 -1.4885 34 1 7.3466 2.1620 -2.3864 35 1 7.3313 2.1430 2.4358 36 1 8.2914 3.3546 1.5538 37 1 6.5139 3.4517 1.5483 38 1 8.7685 0.3041 -2.1164 39 1 9.5854 -1.0046 -1.2281 40 1 7.8083 -0.9074 -1.2340 41 1 10.1014 1.9891 0.9242 42 1 10.9249 0.6874 0.0317 43 1 10.1079 1.9960 -0.8557 44 1 7.7998 -0.9163 1.2645 45 1 9.5769 -1.0134 1.2700 46 1 8.7539 0.2889 2.1620 47 1 4.4454 -1.2813 0.0010 48 1 0.3789 -2.3971 1.6016 49 1 2.0994 -5.5443 -1.3356 50 1 4.1597 -2.5303 -1.4593 51 1 2.0691 -2.8873 -3.4420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_12888846_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:45:49 Heat of formation + Delta-G solvation = -17.394542 kcal Electronic energy + Delta-G solvation = -30047.121757 eV Core-core repulsion = 26198.393278 eV Total energy + Delta-G solvation = -3848.728479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12221 -39.75366 -37.95370 -36.96110 -36.79550 -34.20683 -32.05102 -30.52847 -29.46911 -29.03630 -28.84965 -27.81686 -27.33139 -27.21809 -25.93102 -24.30107 -21.95296 -20.82060 -20.32532 -19.73754 -19.05091 -17.73613 -17.44178 -17.16621 -16.62466 -16.23849 -16.00079 -15.94617 -15.79828 -15.44392 -15.25392 -14.82770 -14.78288 -14.65747 -14.50293 -14.08188 -13.95262 -13.80063 -13.74676 -13.63514 -13.40212 -13.33054 -13.26945 -13.17151 -13.02807 -12.88499 -12.87979 -12.47170 -12.36709 -12.16898 -12.00907 -11.94688 -11.73522 -11.66699 -11.56915 -11.47524 -11.31574 -10.45851 -10.38870 -10.23968 -10.03225 -9.83784 -9.51300 -9.04271 -0.28152 0.46815 0.70033 0.86026 1.12737 1.26361 1.37426 1.45763 1.52915 1.76250 1.81691 1.90604 2.09019 2.13593 2.48817 3.48316 3.55002 3.67628 3.81809 3.92072 4.08377 4.16150 4.16326 4.23543 4.28212 4.31148 4.45063 4.49512 4.51271 4.51433 4.63501 4.69503 4.73362 4.78398 4.79116 4.80270 4.85372 4.90153 4.90745 5.04353 5.06310 5.14688 5.14887 5.20619 5.25439 5.31439 5.38023 5.47025 5.48056 5.55210 5.58942 5.65668 5.84687 6.14711 6.58076 6.89751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.364 5.364 3 N -0.285 5.285 4 C 0.070 3.930 5 C 0.171 3.829 6 O -0.620 6.620 7 Si 1.293 2.707 8 C -0.513 4.513 9 C -0.513 4.513 10 C -0.373 4.373 11 C -0.135 4.135 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.214 4.214 15 C 0.138 3.862 16 C -0.025 4.025 17 C -0.203 4.203 18 S 0.148 5.852 19 C -0.222 4.222 20 C -0.107 4.107 21 C -0.065 4.065 22 O -0.528 6.528 23 Si 0.940 3.060 24 H -0.252 1.252 25 H -0.247 1.247 26 H -0.246 1.246 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.154 0.846 48 H 0.168 0.832 49 H 0.171 0.829 50 H 0.125 0.875 51 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -2.223 0.316 2.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.147 5.147 3 N -0.110 5.110 4 C -0.094 4.094 5 C 0.094 3.906 6 O -0.578 6.578 7 Si 1.424 2.576 8 C -0.615 4.615 9 C -0.615 4.615 10 C -0.417 4.417 11 C -0.192 4.192 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.243 4.243 15 C 0.010 3.990 16 C -0.039 4.039 17 C -0.340 4.340 18 S 0.415 5.585 19 C -0.357 4.357 20 C -0.121 4.121 21 C -0.178 4.178 22 O -0.333 6.333 23 Si 0.762 3.238 24 H -0.176 1.176 25 H -0.170 1.170 26 H -0.169 1.169 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.172 0.828 48 H 0.186 0.814 49 H 0.188 0.812 50 H 0.143 0.857 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.844 -2.946 0.836 4.179 hybrid contribution 0.997 0.697 -0.455 1.299 sum -1.846 -2.249 0.381 2.935 Atomic orbital electron populations 1.21873 0.74267 1.04545 1.03353 1.48631 1.06150 1.02602 1.57348 1.77225 1.00810 1.07254 1.25706 1.21877 0.92506 0.94443 1.00605 1.19923 0.80088 0.88866 1.01721 1.85244 1.27481 1.53551 1.91557 0.76633 0.56352 0.59541 0.65052 1.27046 1.04601 1.11481 1.18331 1.27052 1.04599 1.11337 1.18469 1.25765 1.11022 1.06556 0.98344 1.21521 1.02154 0.99389 0.96125 1.21554 0.96631 0.99637 1.01563 1.21516 1.02136 0.99313 0.96166 1.21107 0.95405 0.94014 1.13790 1.18991 0.90705 0.86109 1.03181 1.16773 0.98627 0.91078 0.97449 1.25937 1.04115 0.98895 1.05062 1.84424 1.38391 1.05159 1.30553 1.25489 1.04197 1.01119 1.04942 1.19208 1.01176 0.92026 0.99659 1.24892 0.97009 1.07898 0.87979 1.86594 1.55077 1.45156 1.46431 0.85849 0.80910 0.75575 0.81458 1.17564 1.17040 1.16898 0.90776 0.89183 0.89450 0.90619 0.90708 0.91364 0.90738 0.90738 0.90820 0.90718 0.91373 0.92655 0.92856 0.92015 0.92530 0.92540 0.92513 0.92046 0.92865 0.92721 0.82795 0.81416 0.81217 0.85713 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.06 10.94 59.85 0.65 0.60 16 2 N -0.36 -1.12 4.05 -64.16 -0.26 -1.38 16 3 N -0.29 -1.36 12.56 33.61 0.42 -0.94 16 4 C 0.07 0.27 7.16 -82.52 -0.59 -0.32 16 5 C 0.17 0.22 5.74 36.00 0.21 0.43 16 6 O -0.62 -0.53 7.88 -35.23 -0.28 -0.81 16 7 Si 1.29 -1.06 8.45 -169.99 -1.44 -2.49 16 8 C -0.51 0.17 8.50 101.05 0.86 1.03 16 9 C -0.51 0.23 8.50 101.05 0.86 1.08 16 10 C -0.37 0.12 0.53 -90.62 -0.05 0.07 16 11 C -0.13 -0.01 7.85 37.16 0.29 0.29 16 12 C -0.14 0.08 7.85 37.16 0.29 0.37 16 13 C -0.13 0.00 7.85 37.16 0.29 0.29 16 14 C -0.21 -0.74 8.76 -39.67 -0.35 -1.09 16 15 C 0.14 0.40 6.22 -82.48 -0.51 -0.11 16 16 C -0.02 -0.03 5.24 -106.68 -0.56 -0.59 16 17 C -0.20 0.08 10.03 29.49 0.30 0.37 16 18 S 0.15 -0.17 23.32 -107.50 -2.51 -2.68 16 19 C -0.22 0.16 9.64 28.92 0.28 0.44 16 20 C -0.11 -0.04 5.18 -105.97 -0.55 -0.59 16 21 C -0.06 -0.02 2.28 36.01 0.08 0.07 16 22 O -0.53 -0.56 12.88 -35.23 -0.45 -1.01 16 23 Si 0.94 -0.53 25.73 -169.99 -4.37 -4.91 16 24 H -0.25 0.26 6.88 56.52 0.39 0.65 16 25 H -0.25 -0.23 7.11 56.52 0.40 0.18 16 26 H -0.25 0.01 7.11 56.52 0.40 0.41 16 27 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.09 -0.16 7.26 -51.93 -0.38 -0.54 16 30 H 0.08 0.00 7.21 -51.93 -0.37 -0.37 16 31 H 0.08 -0.01 7.21 -51.93 -0.37 -0.39 16 32 H 0.07 -0.03 7.48 -51.93 -0.39 -0.42 16 33 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 34 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 35 H 0.07 -0.01 7.79 -51.92 -0.40 -0.42 16 36 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 37 H 0.07 -0.04 7.48 -51.93 -0.39 -0.43 16 38 H 0.05 -0.02 7.80 -51.93 -0.40 -0.43 16 39 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 41 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 42 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.06 -0.06 7.80 -51.93 -0.40 -0.47 16 44 H 0.06 0.01 7.97 -51.92 -0.41 -0.41 16 45 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 47 H 0.15 0.37 6.80 -52.49 -0.36 0.01 16 48 H 0.17 -0.30 8.06 -52.49 -0.42 -0.72 16 49 H 0.17 -0.38 5.68 -52.49 -0.30 -0.67 16 50 H 0.13 0.07 5.60 -51.93 -0.29 -0.22 16 51 H 0.37 -0.88 8.70 45.56 0.40 -0.49 16 LS Contribution 418.71 15.07 6.31 6.31 Total: 0.00 -6.32 418.71 -8.94 -15.26 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -7.86 Total: -9.68 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 1.50 Total: 2.33 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: 0.16 Total: -2.32 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -0.73 Total: -1.82 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -5.81 Total: -7.40 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.51 Total: -2.68 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -6.32 -8.94 -15.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12888846_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.134 kcal (2) G-P(sol) polarization free energy of solvation -6.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds