Wall clock time and date at job start Mon Mar 8 2021 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40067 * 126.13163 * 2 1 4 4 C 1.30885 * 108.51196 * 179.70076 * 3 2 1 5 5 C 1.50694 * 125.70675 * 180.26299 * 4 3 2 6 6 O 1.42899 * 109.47058 * 180.21084 * 5 4 3 7 7 Si 1.63098 * 113.99885 * 179.97438 * 6 5 4 8 8 C 1.86297 * 109.47619 * 300.00127 * 7 6 5 9 9 C 1.86302 * 109.47182 * 60.00192 * 7 6 5 10 10 C 1.86307 * 109.47276 * 179.97438 * 7 6 5 11 11 C 1.53005 * 109.46683 * 60.00048 * 10 7 6 12 12 C 1.52997 * 109.47311 * 180.02562 * 10 7 6 13 13 C 1.52998 * 109.47129 * 300.00443 * 10 7 6 14 14 C 1.39534 * 108.58494 * 0.44183 * 4 3 2 15 15 C 1.36254 * 126.12724 * 179.97438 * 2 1 3 16 16 C 1.47988 * 126.34124 * 0.02562 * 15 2 1 17 17 C 1.34737 * 122.79424 * 311.35957 * 16 15 2 18 18 S 1.75850 * 109.52826 * 180.02562 * 17 16 15 19 19 C 1.75804 * 91.17713 * 359.97438 * 18 17 16 20 20 C 1.33011 * 109.97411 * 359.72957 * 19 18 17 21 21 C 1.50701 * 122.54664 * 180.24210 * 20 19 18 22 22 O 1.42897 * 109.47525 * 105.16735 * 21 20 19 23 23 Si 1.86301 * 109.46655 * 345.16594 * 21 20 19 24 24 H 1.48498 * 109.47123 * 60.00495 * 23 21 20 25 25 H 1.48504 * 109.46847 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47305 * 300.00367 * 23 21 20 27 27 H 1.09002 * 109.46684 * 274.78479 * 1 2 3 28 28 H 1.09002 * 109.47148 * 34.77475 * 1 2 3 29 29 H 1.08992 * 109.47759 * 154.77896 * 1 2 3 30 30 H 1.09004 * 109.47299 * 300.21198 * 5 4 3 31 31 H 1.09002 * 109.47287 * 60.20752 * 5 4 3 32 32 H 1.09001 * 109.46853 * 59.99820 * 8 7 6 33 33 H 1.08996 * 109.47636 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47237 * 300.00252 * 8 7 6 35 35 H 1.09008 * 109.46897 * 59.99625 * 9 7 6 36 36 H 1.09000 * 109.47574 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47027 * 300.00018 * 9 7 6 38 38 H 1.09000 * 109.46668 * 60.00418 * 11 10 7 39 39 H 1.09001 * 109.46888 * 180.02562 * 11 10 7 40 40 H 1.09000 * 109.47145 * 300.00337 * 11 10 7 41 41 H 1.09004 * 109.46925 * 59.99969 * 12 10 7 42 42 H 1.09001 * 109.47190 * 180.02562 * 12 10 7 43 43 H 1.08995 * 109.47027 * 300.00238 * 12 10 7 44 44 H 1.09009 * 109.47277 * 59.99583 * 13 10 7 45 45 H 1.08992 * 109.47315 * 179.97438 * 13 10 7 46 46 H 1.09004 * 109.47031 * 299.99984 * 13 10 7 47 47 H 1.07999 * 126.08145 * 179.81496 * 14 4 3 48 48 H 1.07994 * 125.23675 * 0.02562 * 17 16 15 49 49 H 1.07998 * 125.01657 * 180.02562 * 19 18 17 50 50 H 1.08999 * 109.46955 * 225.17317 * 21 20 19 51 51 H 0.96702 * 113.99985 * 300.00516 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2909 1.1313 0.0000 4 6 3.5384 0.7351 0.0065 5 6 4.7470 1.6351 0.0144 6 8 5.9337 0.8391 0.0151 7 14 7.3146 1.7069 0.0228 8 6 7.3780 2.7868 -1.4939 9 6 7.3683 2.7750 1.5483 10 6 8.7751 0.5501 0.0237 11 6 8.7312 -0.3275 -1.2288 12 6 10.0705 1.3642 0.0316 13 6 8.7228 -0.3363 1.2696 14 6 3.5619 -0.6600 0.0007 15 6 2.2684 -1.1005 0.0005 16 6 1.8226 -2.5117 0.0006 17 6 0.8888 -2.9820 0.8505 18 16 0.6281 -4.6946 0.5483 19 6 1.8223 -4.6858 -0.7419 20 6 2.3295 -3.4643 -0.8832 21 6 3.3768 -3.1359 -1.9158 22 8 2.7762 -2.4080 -2.9888 23 14 4.1167 -4.7141 -2.5735 24 1 3.0501 -5.5392 -3.1955 25 1 5.1484 -4.3905 -3.5915 26 1 4.7409 -5.4706 -1.4585 27 1 -0.3633 0.0857 1.0241 28 1 -0.3633 0.8441 -0.5861 29 1 -0.3634 -0.9296 -0.4378 30 1 4.7345 2.2681 -0.8729 31 1 4.7285 2.2605 0.9070 32 1 6.5236 3.4636 -1.4939 33 1 8.3007 3.3671 -1.4885 34 1 7.3466 2.1620 -2.3864 35 1 7.3313 2.1430 2.4358 36 1 8.2914 3.3546 1.5538 37 1 6.5139 3.4517 1.5483 38 1 8.7685 0.3041 -2.1164 39 1 9.5854 -1.0046 -1.2281 40 1 7.8083 -0.9074 -1.2340 41 1 10.1014 1.9891 0.9242 42 1 10.9249 0.6874 0.0317 43 1 10.1079 1.9960 -0.8557 44 1 7.7998 -0.9163 1.2645 45 1 9.5769 -1.0134 1.2700 46 1 8.7539 0.2889 2.1620 47 1 4.4454 -1.2813 0.0010 48 1 0.3789 -2.3971 1.6016 49 1 2.0994 -5.5443 -1.3356 50 1 4.1597 -2.5303 -1.4593 51 1 2.0691 -2.8873 -3.4420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_12888846_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:45:48 Heat of formation + Delta-G solvation = -10.501584 kcal Electronic energy + Delta-G solvation = -30046.822856 eV Core-core repulsion = 26198.393278 eV Total energy + Delta-G solvation = -3848.429578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.25997 -39.75226 -37.99698 -36.97899 -36.77963 -34.29360 -32.10266 -30.57942 -29.45643 -29.01350 -28.88964 -27.78444 -27.32452 -27.21569 -25.99505 -24.31112 -22.02895 -20.92828 -20.32844 -19.74916 -19.05569 -17.77970 -17.43953 -17.17776 -16.71587 -16.25859 -16.01280 -15.94922 -15.82906 -15.48038 -15.25888 -14.82281 -14.80093 -14.66139 -14.49457 -14.08081 -13.93214 -13.75710 -13.71887 -13.62665 -13.38142 -13.33000 -13.27138 -13.13389 -13.06207 -12.89406 -12.86297 -12.46339 -12.34681 -12.16562 -11.98008 -11.94385 -11.79126 -11.66040 -11.55778 -11.54077 -11.36159 -10.50077 -10.38327 -10.26205 -10.01509 -9.83083 -9.57671 -9.12805 -0.24477 0.53864 0.63776 0.87308 1.15553 1.22987 1.40027 1.44330 1.53908 1.71038 1.83226 1.92428 1.99865 2.16268 2.50701 3.47403 3.56635 3.65500 3.89001 3.94733 4.07306 4.17614 4.18041 4.26808 4.32827 4.37416 4.44910 4.45988 4.52391 4.58703 4.61869 4.67286 4.78272 4.78408 4.82406 4.82459 4.83382 4.87944 4.89346 5.04990 5.06109 5.14486 5.14990 5.15593 5.24843 5.29084 5.38556 5.45041 5.47120 5.53040 5.62127 5.68837 5.69850 6.05386 6.71082 6.73007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.370 5.370 3 N -0.317 5.317 4 C 0.059 3.941 5 C 0.166 3.834 6 O -0.630 6.630 7 Si 1.320 2.680 8 C -0.520 4.520 9 C -0.518 4.518 10 C -0.377 4.377 11 C -0.138 4.138 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.236 4.236 15 C 0.141 3.859 16 C -0.045 4.045 17 C -0.200 4.200 18 S 0.177 5.823 19 C -0.224 4.224 20 C -0.117 4.117 21 C -0.069 4.069 22 O -0.548 6.548 23 Si 0.974 3.026 24 H -0.238 1.238 25 H -0.273 1.273 26 H -0.252 1.252 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.155 0.845 48 H 0.180 0.820 49 H 0.185 0.815 50 H 0.114 0.886 51 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -2.859 0.584 3.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.153 5.153 3 N -0.142 5.142 4 C -0.105 4.105 5 C 0.089 3.911 6 O -0.589 6.589 7 Si 1.450 2.550 8 C -0.621 4.621 9 C -0.620 4.620 10 C -0.420 4.420 11 C -0.196 4.196 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.265 4.265 15 C 0.012 3.988 16 C -0.059 4.059 17 C -0.337 4.337 18 S 0.445 5.555 19 C -0.360 4.360 20 C -0.130 4.130 21 C -0.181 4.181 22 O -0.354 6.354 23 Si 0.796 3.204 24 H -0.161 1.161 25 H -0.197 1.197 26 H -0.175 1.175 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.173 0.827 48 H 0.198 0.802 49 H 0.202 0.798 50 H 0.132 0.868 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.604 -3.584 1.104 5.201 hybrid contribution 1.188 0.851 -0.530 1.554 sum -2.416 -2.732 0.574 3.692 Atomic orbital electron populations 1.22129 0.72626 1.05373 1.04544 1.48917 1.07182 1.02278 1.56914 1.77142 1.01402 1.08480 1.27193 1.22283 0.92991 0.95033 1.00163 1.20075 0.79544 0.88694 1.02777 1.85232 1.27754 1.54165 1.91709 0.76170 0.55356 0.58849 0.64601 1.27119 1.05019 1.11689 1.18315 1.27101 1.05041 1.11509 1.18368 1.25840 1.11651 1.06637 0.97889 1.21559 1.01826 0.99529 0.96647 1.21603 0.96175 0.99720 1.02292 1.21546 1.01780 0.99433 0.96658 1.21261 0.96000 0.94166 1.15066 1.19254 0.90648 0.86928 1.01977 1.16828 0.99896 0.90417 0.98767 1.26130 1.03264 0.99730 1.04601 1.84352 1.37512 1.03969 1.29708 1.25693 1.04027 1.01116 1.05145 1.19197 1.01569 0.92361 0.99866 1.24969 0.96937 1.08193 0.87979 1.86552 1.55795 1.46213 1.46844 0.85374 0.80100 0.74731 0.80173 1.16065 1.19750 1.17543 0.89265 0.88971 0.88123 0.89672 0.89413 0.91148 0.90182 0.91205 0.91090 0.90180 0.91095 0.92211 0.93194 0.92365 0.91780 0.93038 0.91852 0.92404 0.93244 0.92150 0.82718 0.80249 0.79764 0.86822 0.76674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.09 10.94 127.77 1.40 1.31 16 2 N -0.37 -2.60 4.05 -356.89 -1.45 -4.04 16 3 N -0.32 -3.44 12.56 -47.57 -0.60 -4.04 16 4 C 0.06 0.54 7.16 43.01 0.31 0.85 16 5 C 0.17 0.61 5.74 71.23 0.41 1.02 16 6 O -0.63 -1.75 7.88 -148.98 -1.17 -2.92 16 7 Si 1.32 -1.57 8.45 68.60 0.58 -0.99 16 8 C -0.52 0.22 8.50 113.37 0.96 1.19 16 9 C -0.52 0.48 8.50 113.37 0.96 1.44 16 10 C -0.38 0.00 0.53 -10.79 -0.01 0.00 16 11 C -0.14 -0.15 7.85 71.98 0.56 0.41 16 12 C -0.14 0.14 7.85 71.98 0.56 0.70 16 13 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 14 C -0.24 -2.04 8.76 22.21 0.19 -1.84 16 15 C 0.14 0.97 6.22 40.67 0.25 1.22 16 16 C -0.04 -0.11 5.24 -21.20 -0.11 -0.22 16 17 C -0.20 0.27 10.03 67.02 0.67 0.95 16 18 S 0.18 -0.63 23.32 -56.49 -1.32 -1.94 16 19 C -0.22 0.51 9.64 66.65 0.64 1.16 16 20 C -0.12 -0.10 5.18 -20.73 -0.11 -0.21 16 21 C -0.07 -0.09 2.28 71.24 0.16 0.07 16 22 O -0.55 -1.66 12.88 -148.98 -1.92 -3.58 16 23 Si 0.97 -0.94 25.73 68.60 1.77 0.82 16 24 H -0.24 0.81 6.88 99.48 0.68 1.50 16 25 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 26 H -0.25 0.03 7.11 99.48 0.71 0.74 16 27 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.10 -0.40 7.26 -2.39 -0.02 -0.42 16 30 H 0.09 0.09 7.21 -2.38 -0.02 0.08 16 31 H 0.09 0.03 7.21 -2.39 -0.02 0.02 16 32 H 0.07 -0.06 7.48 -2.39 -0.02 -0.08 16 33 H 0.08 -0.13 7.79 -2.39 -0.02 -0.15 16 34 H 0.07 0.04 7.79 -2.39 -0.02 0.03 16 35 H 0.07 -0.01 7.79 -2.38 -0.02 -0.03 16 36 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 37 H 0.07 -0.10 7.48 -2.39 -0.02 -0.12 16 38 H 0.06 0.00 7.80 -2.39 -0.02 -0.02 16 39 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.06 0.10 7.97 -2.39 -0.02 0.08 16 41 H 0.06 -0.16 7.79 -2.38 -0.02 -0.18 16 42 H 0.05 0.00 8.14 -2.39 -0.02 -0.01 16 43 H 0.06 -0.15 7.80 -2.39 -0.02 -0.17 16 44 H 0.06 0.08 7.97 -2.38 -0.02 0.06 16 45 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.06 -0.03 7.79 -2.38 -0.02 -0.05 16 47 H 0.16 1.10 6.80 -2.91 -0.02 1.08 16 48 H 0.18 -0.79 8.06 -2.91 -0.02 -0.82 16 49 H 0.19 -1.08 5.68 -2.91 -0.02 -1.10 16 50 H 0.11 0.35 5.60 -2.39 -0.01 0.34 16 51 H 0.38 -1.67 8.70 -74.06 -0.64 -2.32 16 Total: 0.00 -14.85 418.71 4.34 -10.51 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: 1.01 Total: -2.30 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.44 Total: 8.49 kcal Atomic # 7 Polarization: -6.04 SS G_CDS: -2.04 Total: -8.08 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -3.09 Total: -6.50 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.34 Total: -0.17 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.32 Total: -1.94 kcal Total: -14.85 4.34 -10.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_12888846_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.006 kcal (2) G-P(sol) polarization free energy of solvation -14.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds