Wall clock time and date at job start Mon Mar 8 2021 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47344 * 2 1 4 4 C 1.52998 * 109.47050 * 240.00216 * 2 1 3 5 5 Si 1.86306 * 109.47241 * 120.00092 * 2 1 3 6 6 C 1.86300 * 109.47100 * 299.99897 * 5 2 1 7 7 C 1.86296 * 109.46935 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47041 * 59.99941 * 5 2 1 9 9 C 1.42896 * 113.99852 * 180.02562 * 8 5 2 10 10 C 1.50705 * 109.47051 * 180.02562 * 9 8 5 11 11 C 1.33524 * 122.06701 * 0.02562 * 10 9 8 12 12 S 1.76242 * 108.26568 * 180.02562 * 11 10 9 13 13 C 1.76173 * 89.85660 * 359.97438 * 12 11 10 14 14 C 1.47783 * 125.48202 * 180.02562 * 13 12 11 15 15 C 1.34845 * 122.82355 * 180.02562 * 14 13 12 16 16 S 1.75846 * 109.52315 * 179.97438 * 15 14 13 17 17 C 1.75797 * 91.18702 * 359.97438 * 16 15 14 18 18 C 1.50702 * 124.99516 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47203 * 120.02384 * 18 17 16 20 20 Si 1.86300 * 109.47115 * 0.02562 * 18 17 16 21 21 H 1.48500 * 109.47198 * 60.00481 * 20 18 17 22 22 H 1.48496 * 109.47097 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47124 * 300.00097 * 20 18 17 24 24 C 1.32959 * 110.00515 * 359.72548 * 17 16 15 25 25 N 1.30276 * 109.03956 * 359.97438 * 13 12 11 26 26 H 1.09001 * 109.46967 * 299.99882 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99587 * 1 2 3 28 28 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47113 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46870 * 300.00499 * 3 2 1 31 31 H 1.09001 * 109.46992 * 60.00133 * 3 2 1 32 32 H 1.09007 * 109.47133 * 299.99935 * 4 2 1 33 33 H 1.08994 * 109.47053 * 59.99569 * 4 2 1 34 34 H 1.08998 * 109.47645 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46772 * 179.97438 * 6 5 2 36 36 H 1.08994 * 109.47185 * 300.00148 * 6 5 2 37 37 H 1.08996 * 109.46800 * 60.00137 * 6 5 2 38 38 H 1.09001 * 109.47312 * 300.00049 * 7 5 2 39 39 H 1.08999 * 109.47189 * 60.00517 * 7 5 2 40 40 H 1.09001 * 109.47066 * 180.02562 * 7 5 2 41 41 H 1.08991 * 109.47413 * 60.00057 * 9 8 5 42 42 H 1.08999 * 109.47044 * 299.99697 * 9 8 5 43 43 H 1.07999 * 125.86589 * 359.75255 * 11 10 9 44 44 H 1.08007 * 125.23435 * 359.97008 * 15 14 13 45 45 H 1.09001 * 109.46720 * 240.02075 * 18 17 16 46 46 H 0.96699 * 113.99306 * 299.99452 * 19 18 17 47 47 H 1.08008 * 122.53708 * 180.24661 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5212 6 6 1.5301 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6074 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4723 -4.5782 2.5485 11 6 0.7096 -4.9633 1.5224 12 16 0.2633 -6.6504 1.7686 13 6 1.1775 -6.6680 3.2744 14 6 1.3200 -7.8287 4.1780 15 6 2.0343 -7.7821 5.3207 16 16 1.9688 -9.3475 6.1190 17 6 0.9557 -9.9990 4.8385 18 6 0.4268 -11.4092 4.7878 19 8 -1.0018 -11.3819 4.7710 20 14 1.0123 -12.3463 6.2878 21 1 0.5154 -11.6752 7.5158 22 1 0.4917 -13.7361 6.2376 23 1 2.4969 -12.3747 6.3054 24 6 0.7203 -9.0629 3.9240 25 7 1.7088 -5.4934 3.4628 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.8931 -0.5142 3.9322 36 1 1.8934 1.0276 3.0423 37 1 0.4401 -0.0001 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1486 1.5205 40 1 4.3774 -1.3931 2.4104 41 1 1.6638 -2.7113 3.5651 42 1 3.1174 -3.2252 2.6758 43 1 0.4131 -4.3456 0.6876 44 1 2.5650 -6.9164 5.6889 45 1 0.7914 -11.9018 3.8864 46 1 -1.3961 -10.9569 5.5450 47 1 0.1146 -9.2453 3.0486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13019922_12621894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:52:37 Heat of formation + Delta-G solvation = -56.106852 kcal Electronic energy + Delta-G solvation = -26077.755447 eV Core-core repulsion = 22409.237912 eV Total energy + Delta-G solvation = -3668.517535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.096 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88980 -39.44061 -37.95587 -37.36429 -36.88878 -32.59189 -30.72026 -29.52974 -29.13471 -27.98260 -27.90544 -27.42799 -27.19489 -26.26857 -22.91112 -20.83733 -20.44851 -20.12187 -19.21175 -18.49968 -17.70483 -17.27198 -16.73774 -16.65988 -16.38244 -16.19737 -15.79626 -15.53926 -15.17401 -14.90235 -14.77977 -14.62322 -14.33994 -14.11646 -14.02874 -13.80580 -13.77877 -13.58942 -13.55584 -13.43950 -13.27985 -12.97882 -12.97497 -12.58162 -12.46092 -12.43195 -12.33492 -12.20017 -12.08191 -11.77316 -11.67870 -11.66889 -11.47497 -10.75033 -10.70641 -10.56815 -10.47253 -10.13138 -10.06382 -9.78859 -9.02119 -0.67135 0.04563 0.22315 0.41130 0.66510 0.80563 1.04387 1.28349 1.31357 1.38124 1.45733 1.67888 1.82933 1.99382 2.14080 2.32228 2.96741 3.34252 3.65707 3.90458 4.06558 4.07000 4.08756 4.20139 4.34345 4.35462 4.37540 4.43841 4.47875 4.55578 4.64308 4.69306 4.69627 4.70545 4.77210 4.80919 4.88486 4.95172 5.00418 5.05585 5.05803 5.06553 5.14193 5.21758 5.30189 5.36440 5.37491 5.43969 5.50904 5.56349 6.40290 6.71579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.294 2.706 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.164 3.836 10 C 0.055 3.945 11 C -0.211 4.211 12 S 0.095 5.905 13 C 0.135 3.865 14 C -0.050 4.050 15 C -0.148 4.148 16 S 0.123 5.877 17 C -0.219 4.219 18 C -0.039 4.039 19 O -0.532 6.532 20 Si 0.894 3.106 21 H -0.233 1.233 22 H -0.226 1.226 23 H -0.232 1.232 24 C -0.087 4.087 25 N -0.462 5.462 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.190 0.810 44 H 0.179 0.821 45 H 0.128 0.872 46 H 0.379 0.621 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -0.113 0.933 1.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.086 3.914 10 C -0.077 4.077 11 C -0.351 4.351 12 S 0.352 5.648 13 C -0.143 4.143 14 C -0.066 4.066 15 C -0.289 4.289 16 S 0.387 5.613 17 C -0.336 4.336 18 C -0.152 4.152 19 O -0.337 6.337 20 Si 0.713 3.287 21 H -0.156 1.156 22 H -0.148 1.148 23 H -0.155 1.155 24 C -0.118 4.118 25 N -0.178 5.178 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.207 0.793 44 H 0.196 0.804 45 H 0.146 0.854 46 H 0.226 0.774 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.912 -2.284 2.138 3.259 hybrid contribution -0.197 2.618 -1.128 2.857 sum 0.715 0.334 1.010 1.281 Atomic orbital electron populations 1.21515 0.93776 1.01969 1.01865 1.25778 1.00694 1.02678 1.12612 1.21554 1.00814 0.94834 1.02203 1.21514 1.00668 1.00168 0.96775 0.76613 0.63016 0.52788 0.65054 1.27035 1.07080 1.09555 1.17745 1.27037 1.24930 1.04837 1.04614 1.85232 1.79608 1.46214 1.47425 1.20143 0.97928 0.86100 0.87256 1.19818 1.00234 0.96323 0.91307 1.26767 1.05517 0.97187 1.05598 1.85090 1.49943 1.09485 1.20330 1.25116 0.99059 0.93802 0.96280 1.16769 1.03239 0.91489 0.95062 1.26041 1.03619 1.01363 0.97841 1.84492 1.48788 1.03862 1.24126 1.24673 1.07475 1.01526 0.99889 1.24381 0.84813 0.93577 1.12417 1.86544 1.16528 1.82197 1.48473 0.86270 0.82448 0.82878 0.77088 1.15622 1.14847 1.15510 1.19897 1.00554 0.90756 1.00630 1.66229 1.22885 0.99727 1.28937 0.92654 0.92759 0.92221 0.92472 0.92456 0.92475 0.92226 0.92760 0.92650 0.91346 0.90603 0.90807 0.90807 0.90605 0.91347 0.90514 0.90520 0.79336 0.80376 0.85412 0.77367 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.28 0.53 -90.62 -0.05 0.23 16 3 C -0.14 0.13 7.85 37.16 0.29 0.42 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -1.85 8.45 -169.99 -1.44 -3.28 16 6 C -0.51 0.47 8.50 101.05 0.86 1.33 16 7 C -0.51 0.47 8.50 101.05 0.86 1.33 16 8 O -0.63 0.03 7.41 -35.23 -0.26 -0.23 16 9 C 0.16 0.06 5.72 36.01 0.21 0.27 16 10 C 0.05 0.13 6.69 -84.38 -0.56 -0.43 16 11 C -0.21 -0.36 10.51 29.08 0.31 -0.05 16 12 S 0.10 0.13 22.83 -107.50 -2.45 -2.33 16 13 C 0.13 0.35 7.40 -14.31 -0.11 0.24 16 14 C -0.05 -0.08 5.79 -106.71 -0.62 -0.70 16 15 C -0.15 -0.11 10.93 29.53 0.32 0.21 16 16 S 0.12 -0.02 20.53 -107.50 -2.21 -2.23 16 17 C -0.22 0.03 5.70 -36.14 -0.21 -0.17 16 18 C -0.04 0.05 2.96 36.01 0.11 0.15 16 19 O -0.53 0.32 12.85 -35.23 -0.45 -0.13 16 20 Si 0.89 -1.05 26.23 -169.99 -4.46 -5.51 16 21 H -0.23 0.22 7.11 56.52 0.40 0.62 16 22 H -0.23 0.05 7.11 56.52 0.40 0.45 16 23 H -0.23 0.14 7.11 56.52 0.40 0.54 16 24 C -0.09 -0.05 9.58 -40.92 -0.39 -0.45 16 25 N -0.46 -1.52 10.39 -7.57 -0.08 -1.60 16 26 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 -0.02 7.97 -51.92 -0.41 -0.43 16 33 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 34 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 36 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 37 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 41 H 0.08 -0.06 7.21 -51.93 -0.37 -0.43 16 42 H 0.08 -0.06 7.21 -51.93 -0.37 -0.43 16 43 H 0.19 0.06 7.50 -52.49 -0.39 -0.33 16 44 H 0.18 -0.02 8.06 -52.48 -0.42 -0.44 16 45 H 0.13 -0.29 7.96 -51.93 -0.41 -0.70 16 46 H 0.38 -1.39 8.70 45.56 0.40 -1.00 16 47 H 0.15 -0.01 7.76 -52.48 -0.41 -0.41 16 LS Contribution 408.39 15.07 6.15 6.15 Total: 0.00 -4.58 408.39 -10.49 -15.07 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -6.89 Total: -9.01 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 1.60 Total: 3.09 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Atomic # 8 Polarization: 0.36 SS G_CDS: -0.71 Total: -0.36 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: -5.89 Total: -8.79 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -4.66 Total: -4.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -4.58 -10.49 -15.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_12621894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.041 kcal (2) G-P(sol) polarization free energy of solvation -4.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds