Wall clock time and date at job start Mon Mar 8 2021 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47344 * 2 1 4 4 C 1.52998 * 109.47050 * 240.00216 * 2 1 3 5 5 Si 1.86306 * 109.47241 * 120.00092 * 2 1 3 6 6 C 1.86300 * 109.47100 * 299.99897 * 5 2 1 7 7 C 1.86296 * 109.46935 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47041 * 59.99941 * 5 2 1 9 9 C 1.42896 * 113.99852 * 180.02562 * 8 5 2 10 10 C 1.50705 * 109.47051 * 180.02562 * 9 8 5 11 11 C 1.33524 * 122.06701 * 0.02562 * 10 9 8 12 12 S 1.76242 * 108.26568 * 180.02562 * 11 10 9 13 13 C 1.76173 * 89.85660 * 359.97438 * 12 11 10 14 14 C 1.47783 * 125.48202 * 180.02562 * 13 12 11 15 15 C 1.34845 * 122.82355 * 180.02562 * 14 13 12 16 16 S 1.75846 * 109.52315 * 179.97438 * 15 14 13 17 17 C 1.75797 * 91.18702 * 359.97438 * 16 15 14 18 18 C 1.50702 * 124.99516 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47203 * 120.02384 * 18 17 16 20 20 Si 1.86300 * 109.47115 * 0.02562 * 18 17 16 21 21 H 1.48500 * 109.47198 * 60.00481 * 20 18 17 22 22 H 1.48496 * 109.47097 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47124 * 300.00097 * 20 18 17 24 24 C 1.32959 * 110.00515 * 359.72548 * 17 16 15 25 25 N 1.30276 * 109.03956 * 359.97438 * 13 12 11 26 26 H 1.09001 * 109.46967 * 299.99882 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99587 * 1 2 3 28 28 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47113 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46870 * 300.00499 * 3 2 1 31 31 H 1.09001 * 109.46992 * 60.00133 * 3 2 1 32 32 H 1.09007 * 109.47133 * 299.99935 * 4 2 1 33 33 H 1.08994 * 109.47053 * 59.99569 * 4 2 1 34 34 H 1.08998 * 109.47645 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46772 * 179.97438 * 6 5 2 36 36 H 1.08994 * 109.47185 * 300.00148 * 6 5 2 37 37 H 1.08996 * 109.46800 * 60.00137 * 6 5 2 38 38 H 1.09001 * 109.47312 * 300.00049 * 7 5 2 39 39 H 1.08999 * 109.47189 * 60.00517 * 7 5 2 40 40 H 1.09001 * 109.47066 * 180.02562 * 7 5 2 41 41 H 1.08991 * 109.47413 * 60.00057 * 9 8 5 42 42 H 1.08999 * 109.47044 * 299.99697 * 9 8 5 43 43 H 1.07999 * 125.86589 * 359.75255 * 11 10 9 44 44 H 1.08007 * 125.23435 * 359.97008 * 15 14 13 45 45 H 1.09001 * 109.46720 * 240.02075 * 18 17 16 46 46 H 0.96699 * 113.99306 * 299.99452 * 19 18 17 47 47 H 1.08008 * 122.53708 * 180.24661 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5212 6 6 1.5301 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6074 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4723 -4.5782 2.5485 11 6 0.7096 -4.9633 1.5224 12 16 0.2633 -6.6504 1.7686 13 6 1.1775 -6.6680 3.2744 14 6 1.3200 -7.8287 4.1780 15 6 2.0343 -7.7821 5.3207 16 16 1.9688 -9.3475 6.1190 17 6 0.9557 -9.9990 4.8385 18 6 0.4268 -11.4092 4.7878 19 8 -1.0018 -11.3819 4.7710 20 14 1.0123 -12.3463 6.2878 21 1 0.5154 -11.6752 7.5158 22 1 0.4917 -13.7361 6.2376 23 1 2.4969 -12.3747 6.3054 24 6 0.7203 -9.0629 3.9240 25 7 1.7088 -5.4934 3.4628 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.8931 -0.5142 3.9322 36 1 1.8934 1.0276 3.0423 37 1 0.4401 -0.0001 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1486 1.5205 40 1 4.3774 -1.3931 2.4104 41 1 1.6638 -2.7113 3.5651 42 1 3.1174 -3.2252 2.6758 43 1 0.4131 -4.3456 0.6876 44 1 2.5650 -6.9164 5.6889 45 1 0.7914 -11.9018 3.8864 46 1 -1.3961 -10.9569 5.5450 47 1 0.1146 -9.2453 3.0486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13019922_12621894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:52:36 Heat of formation + Delta-G solvation = -47.144708 kcal Electronic energy + Delta-G solvation = -26077.366819 eV Core-core repulsion = 22409.237912 eV Total energy + Delta-G solvation = -3668.128908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.096 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97829 -39.43484 -37.92120 -37.33015 -36.82572 -32.61652 -30.75196 -29.44704 -29.05866 -28.02268 -27.83084 -27.37016 -27.18987 -26.29019 -22.92210 -20.84527 -20.40952 -20.20333 -19.24424 -18.48275 -17.65495 -17.27184 -16.77935 -16.67368 -16.30458 -16.16738 -15.74764 -15.51215 -15.22666 -14.83624 -14.73178 -14.60558 -14.34285 -14.11865 -13.98524 -13.80696 -13.76392 -13.60886 -13.50481 -13.36068 -13.18443 -12.94360 -12.91257 -12.54967 -12.42029 -12.39351 -12.32193 -12.15044 -12.02982 -11.72337 -11.64898 -11.60805 -11.43231 -10.83513 -10.77301 -10.53696 -10.42996 -10.11860 -10.06615 -9.78936 -9.07456 -0.75515 0.00892 0.15962 0.39133 0.62874 0.74363 1.11337 1.29050 1.36903 1.42493 1.52063 1.77722 1.90050 2.03782 2.11412 2.39396 2.93691 3.47468 3.72412 3.86037 4.08779 4.12632 4.13420 4.21134 4.30025 4.38244 4.39339 4.47741 4.51449 4.58859 4.74418 4.76520 4.78345 4.79362 4.83899 4.84505 4.87951 4.95729 5.01495 5.04759 5.10521 5.11042 5.16486 5.23692 5.34255 5.39705 5.42507 5.47824 5.60107 5.65060 6.60391 6.64233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.326 2.674 6 C -0.520 4.520 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.160 3.840 10 C 0.041 3.959 11 C -0.219 4.219 12 S 0.110 5.890 13 C 0.122 3.878 14 C -0.063 4.063 15 C -0.152 4.152 16 S 0.136 5.864 17 C -0.216 4.216 18 C -0.036 4.036 19 O -0.545 6.545 20 Si 0.916 3.084 21 H -0.236 1.236 22 H -0.240 1.240 23 H -0.240 1.240 24 C -0.095 4.095 25 N -0.480 5.480 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.199 0.801 44 H 0.183 0.817 45 H 0.139 0.861 46 H 0.391 0.609 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -0.181 1.227 1.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.456 2.544 6 C -0.622 4.622 7 C -0.622 4.622 8 O -0.592 6.592 9 C 0.081 3.919 10 C -0.091 4.091 11 C -0.358 4.358 12 S 0.366 5.634 13 C -0.155 4.155 14 C -0.079 4.079 15 C -0.293 4.293 16 S 0.401 5.599 17 C -0.333 4.333 18 C -0.149 4.149 19 O -0.352 6.352 20 Si 0.737 3.263 21 H -0.159 1.159 22 H -0.163 1.163 23 H -0.163 1.163 24 C -0.126 4.126 25 N -0.196 5.196 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.216 0.784 44 H 0.200 0.800 45 H 0.156 0.844 46 H 0.240 0.760 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.018 -2.341 2.433 3.526 hybrid contribution -0.246 2.618 -1.211 2.895 sum 0.772 0.277 1.221 1.471 Atomic orbital electron populations 1.21550 0.94175 1.01884 1.01848 1.25882 1.00425 1.02971 1.12930 1.21607 1.01318 0.94683 1.02258 1.21549 1.01019 1.00085 0.96805 0.76048 0.62313 0.51908 0.64113 1.27117 1.06934 1.09973 1.18129 1.27120 1.25351 1.05111 1.04580 1.85218 1.79850 1.46721 1.47434 1.20266 0.98491 0.85372 0.87736 1.20156 1.00490 0.97071 0.91343 1.26963 1.05510 0.97518 1.05856 1.84964 1.49489 1.09313 1.19629 1.25369 0.99225 0.93996 0.96901 1.16904 1.03974 0.91654 0.95393 1.26160 1.03410 1.01985 0.97779 1.84436 1.48511 1.03181 1.23812 1.24827 1.07049 1.01859 0.99535 1.24430 0.84640 0.92852 1.12944 1.86517 1.16737 1.82415 1.49513 0.85956 0.81636 0.81853 0.76870 1.15865 1.16291 1.16281 1.19939 1.00915 0.90615 1.01088 1.66256 1.23564 1.00157 1.29596 0.92156 0.93323 0.92346 0.91790 0.93088 0.91791 0.92352 0.93323 0.92158 0.91113 0.90205 0.91120 0.91128 0.90207 0.91118 0.89529 0.89548 0.78389 0.80015 0.84385 0.75956 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 7.85 71.98 0.56 0.63 16 2 C -0.38 0.55 0.53 -10.79 -0.01 0.54 16 3 C -0.14 0.28 7.85 71.98 0.56 0.84 16 4 C -0.14 0.07 7.85 71.98 0.56 0.63 16 5 Si 1.33 -4.11 8.45 68.60 0.58 -3.53 16 6 C -0.52 1.17 8.50 113.37 0.96 2.14 16 7 C -0.52 1.16 8.50 113.37 0.96 2.12 16 8 O -0.63 0.12 7.41 -148.98 -1.10 -0.98 16 9 C 0.16 0.12 5.72 71.24 0.41 0.53 16 10 C 0.04 0.21 6.69 41.54 0.28 0.49 16 11 C -0.22 -0.82 10.51 66.75 0.70 -0.11 16 12 S 0.11 0.34 22.83 -56.49 -1.29 -0.95 16 13 C 0.12 0.71 7.40 87.45 0.65 1.35 16 14 C -0.06 -0.23 5.79 -21.22 -0.12 -0.35 16 15 C -0.15 -0.28 10.93 67.04 0.73 0.46 16 16 S 0.14 -0.06 20.53 -56.49 -1.16 -1.22 16 17 C -0.22 0.11 5.70 24.52 0.14 0.25 16 18 C -0.04 0.10 2.96 71.24 0.21 0.31 16 19 O -0.54 0.92 12.85 -148.98 -1.91 -0.99 16 20 Si 0.92 -2.38 26.23 68.60 1.80 -0.58 16 21 H -0.24 0.55 7.11 99.48 0.71 1.25 16 22 H -0.24 0.08 7.11 99.48 0.71 0.79 16 23 H -0.24 0.34 7.11 99.48 0.71 1.05 16 24 C -0.09 -0.13 9.58 21.42 0.21 0.08 16 25 N -0.48 -3.44 10.39 -177.85 -1.85 -5.28 16 26 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 27 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 32 H 0.06 -0.02 7.97 -2.38 -0.02 -0.04 16 33 H 0.05 0.02 8.14 -2.39 -0.02 0.01 16 34 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 35 H 0.07 -0.19 7.48 -2.39 -0.02 -0.20 16 36 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 37 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 38 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 39 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 40 H 0.07 -0.18 7.48 -2.39 -0.02 -0.20 16 41 H 0.09 -0.14 7.21 -2.39 -0.02 -0.16 16 42 H 0.09 -0.14 7.21 -2.39 -0.02 -0.15 16 43 H 0.20 0.18 7.50 -2.91 -0.02 0.15 16 44 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 45 H 0.14 -0.70 7.96 -2.39 -0.02 -0.72 16 46 H 0.39 -3.05 8.70 -74.06 -0.64 -3.69 16 47 H 0.15 0.02 7.76 -2.91 -0.02 -0.01 16 Total: 0.00 -10.02 408.39 2.95 -7.07 By element: Atomic # 1 Polarization: -4.51 SS G_CDS: 1.07 Total: -3.43 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.82 Total: 9.91 kcal Atomic # 7 Polarization: -3.44 SS G_CDS: -1.85 Total: -5.28 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: -3.02 Total: -1.98 kcal Atomic # 14 Polarization: -6.49 SS G_CDS: 2.38 Total: -4.11 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.45 Total: -2.17 kcal Total: -10.02 2.95 -7.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_12621894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.077 kcal (2) G-P(sol) polarization free energy of solvation -10.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds