Wall clock time and date at job start Mon Mar 8 2021 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.33055 * 125.03464 * 299.72264 * 4 2 1 6 6 C 1.39374 * 114.91083 * 179.79561 * 5 4 2 7 7 C 1.48369 * 122.76387 * 180.20842 * 6 5 4 8 8 C 1.39355 * 120.12771 * 0.02562 * 7 6 5 9 9 C 1.38007 * 119.87823 * 179.74056 * 8 7 6 10 10 C 1.38326 * 120.12558 * 0.51259 * 9 8 7 11 11 C 1.50694 * 119.88239 * 179.74206 * 10 9 8 12 12 H 1.08995 * 112.85611 * 189.68655 * 11 10 9 13 13 C 1.53780 * 113.61517 * 320.88470 * 11 10 9 14 14 C 1.53955 * 87.02476 * 139.94786 * 13 11 10 15 15 H 1.09000 * 113.60974 * 89.19482 * 14 13 11 16 16 O 1.42894 * 113.67114 * 220.06861 * 14 13 11 17 17 C 1.53784 * 113.61214 * 58.48907 * 11 10 9 18 18 C 1.38333 * 120.24137 * 359.76029 * 10 9 8 19 19 C 1.38004 * 120.12436 * 359.97438 * 18 10 9 20 20 C 1.34562 * 114.46506 * 0.49169 * 6 5 4 21 21 S 1.75820 * 125.03462 * 120.02280 * 4 2 1 22 22 H 0.96698 * 113.99898 * 59.99565 * 1 2 3 23 23 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 24 24 H 1.48504 * 110.00019 * 298.68426 * 3 2 1 25 25 H 1.48503 * 110.00152 * 60.00114 * 3 2 1 26 26 H 1.07993 * 122.54191 * 359.97438 * 5 4 2 27 27 H 1.08006 * 120.05646 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.94244 * 180.25195 * 9 8 7 29 29 H 1.08997 * 113.61476 * 254.53403 * 13 11 10 30 30 H 1.09008 * 113.61263 * 25.42847 * 13 11 10 31 31 H 0.96701 * 114.00006 * 277.56134 * 16 14 13 32 32 H 1.08995 * 113.61942 * 334.57030 * 17 11 10 33 33 H 1.09006 * 113.61429 * 105.47660 * 17 11 10 34 34 H 1.08000 * 119.93398 * 180.02562 * 18 10 9 35 35 H 1.08005 * 120.06384 * 180.02562 * 19 18 10 36 36 H 1.07996 * 125.23052 * 179.75977 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6766 -1.9799 -1.5370 6 6 2.2447 -2.4209 -2.7308 7 6 2.0688 -3.8028 -3.2414 8 6 1.3092 -4.7230 -2.5216 9 6 1.1445 -6.0055 -3.0041 10 6 1.7405 -6.3814 -4.1944 11 6 1.5618 -7.7849 -4.7132 12 1 2.2091 -8.0084 -5.5612 13 6 1.5969 -8.8578 -3.6120 14 6 0.4516 -9.5561 -4.3676 15 1 0.7943 -10.2655 -5.1209 16 8 -0.5539 -10.0997 -3.5101 17 6 0.0918 -8.1751 -4.9406 18 6 2.5003 -5.4737 -4.9102 19 6 2.6672 -4.1870 -4.4400 20 6 2.9709 -1.4918 -3.3791 21 16 2.9468 0.0133 -2.4699 22 1 -0.3933 0.4418 -0.7650 23 1 1.7923 -0.5139 0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5616 2.4679 1.2085 26 1 1.0730 -2.6191 -0.9098 27 1 0.8471 -4.4319 -1.5898 28 1 0.5526 -6.7183 -2.4491 29 1 2.5226 -9.4328 -3.5920 30 1 1.3079 -8.4846 -2.6294 31 1 -0.3333 -10.9683 -3.1466 32 1 -0.6094 -7.6150 -4.3220 33 1 -0.1958 -8.1999 -5.9917 34 1 2.9630 -5.7723 -5.8392 35 1 3.2602 -3.4790 -4.9999 36 1 3.4885 -1.6465 -4.3142 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13019922_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:34 Heat of formation + Delta-G solvation = 1.949124 kcal Electronic energy + Delta-G solvation = -19527.355345 eV Core-core repulsion = 16456.222409 eV Total energy + Delta-G solvation = -3071.132936 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24486 -40.00823 -38.74735 -37.47178 -35.93319 -32.66498 -32.02182 -30.45767 -27.11218 -26.73530 -26.28874 -23.82891 -23.27008 -22.15202 -20.49080 -20.02527 -18.94671 -18.63255 -17.63387 -17.30212 -16.56177 -16.35876 -16.15138 -15.69838 -15.55526 -15.28826 -14.78888 -14.46854 -14.38270 -13.99188 -13.92809 -13.64116 -13.50791 -13.44402 -13.28748 -12.56118 -12.47306 -12.31783 -12.26834 -12.12847 -11.66357 -11.50908 -11.37572 -10.78065 -10.75883 -10.28167 -9.85829 -9.66416 -8.78376 -5.08732 -0.33818 0.38785 0.50253 0.50999 0.79312 1.21783 1.56413 1.80397 1.88485 2.92621 3.19604 3.25213 3.51539 3.58246 3.60534 3.84113 3.90314 3.91744 3.96912 4.03122 4.09229 4.17281 4.35900 4.45267 4.49822 4.57643 4.58415 4.74390 4.76956 4.93669 4.94499 5.01785 5.05443 5.13584 5.21122 5.29767 5.32655 5.54784 5.72386 5.73125 6.04166 6.29218 6.68345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.033 4.033 3 Si 0.651 3.349 4 C -0.218 4.218 5 C -0.094 4.094 6 C -0.062 4.062 7 C -0.030 4.030 8 C -0.104 4.104 9 C -0.111 4.111 10 C -0.067 4.067 11 C -0.073 4.073 12 H 0.101 0.899 13 C -0.163 4.163 14 C 0.074 3.926 15 H 0.083 0.917 16 O -0.560 6.560 17 C -0.120 4.120 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.199 4.199 21 S 0.116 5.884 22 H 0.378 0.622 23 H 0.127 0.873 24 H -0.241 1.241 25 H -0.236 1.236 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.379 0.621 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -1.255 -1.337 3.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.145 4.145 3 Si 0.549 3.451 4 C -0.335 4.335 5 C -0.125 4.125 6 C -0.074 4.074 7 C -0.033 4.033 8 C -0.123 4.123 9 C -0.129 4.129 10 C -0.068 4.068 11 C -0.092 4.092 12 H 0.119 0.881 13 C -0.200 4.200 14 C 0.015 3.985 15 H 0.101 0.899 16 O -0.365 6.365 17 C -0.157 4.157 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.335 4.335 21 S 0.382 5.618 22 H 0.226 0.774 23 H 0.144 0.856 24 H -0.164 1.164 25 H -0.159 1.159 26 H 0.162 0.838 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.227 0.773 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.492 1.340 -1.141 3.910 hybrid contribution -1.217 -2.099 -0.314 2.447 sum 2.275 -0.759 -1.456 2.805 Atomic orbital electron populations 1.86622 1.17233 1.79925 1.49273 1.24383 0.83814 1.10092 0.96247 0.95185 0.91915 0.75087 0.82870 1.24687 1.07508 0.98779 1.02533 1.20039 1.00834 0.94858 0.96747 1.17816 1.00321 0.93813 0.95464 1.18411 0.98533 0.91306 0.95015 1.21187 0.98344 0.93028 0.99693 1.20960 0.99853 0.96107 0.95994 1.19681 0.97293 0.94873 0.94912 1.21305 0.97709 0.91160 0.99001 0.88091 1.23861 0.99536 0.97559 0.99073 1.23398 0.88418 0.94299 0.92351 0.89923 1.86536 1.45093 1.38807 1.66109 1.23176 0.95961 0.94788 1.01789 1.20969 0.99022 0.93119 0.99870 1.21139 0.99593 0.96336 0.95475 1.25871 1.06449 0.96297 1.04857 1.84259 1.48912 1.13504 1.15131 0.77418 0.85583 1.16445 1.15887 0.83794 0.85739 0.85646 0.90912 0.88786 0.77338 0.88858 0.90514 0.85781 0.85889 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.63 12.86 -35.23 -0.45 -1.08 16 2 C -0.03 0.00 2.96 36.01 0.11 0.11 16 3 Si 0.65 -0.39 30.95 -169.99 -5.26 -5.65 16 4 C -0.22 -0.12 5.71 -36.11 -0.21 -0.33 16 5 C -0.09 -0.12 9.37 -40.96 -0.38 -0.50 16 6 C -0.06 -0.09 5.79 -106.60 -0.62 -0.71 16 7 C -0.03 -0.05 5.88 -104.89 -0.62 -0.67 16 8 C -0.10 -0.15 9.50 -39.25 -0.37 -0.52 16 9 C -0.11 -0.13 8.52 -39.63 -0.34 -0.46 16 10 C -0.07 -0.05 5.30 -104.56 -0.55 -0.61 16 11 C -0.07 0.04 3.97 -90.96 -0.36 -0.32 16 12 H 0.10 -0.16 8.08 -51.93 -0.42 -0.58 16 13 C -0.16 0.12 7.30 -25.83 -0.19 -0.07 16 14 C 0.07 -0.04 5.21 -25.82 -0.13 -0.17 16 15 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 16 O -0.56 -0.45 13.67 -35.23 -0.48 -0.93 16 17 C -0.12 -0.01 7.37 -25.91 -0.19 -0.20 16 18 C -0.11 -0.07 9.69 -39.63 -0.38 -0.45 16 19 C -0.11 -0.10 9.48 -39.25 -0.37 -0.47 16 20 C -0.20 -0.09 10.51 29.43 0.31 0.22 16 21 S 0.12 0.00 20.54 -107.50 -2.21 -2.20 16 22 H 0.38 -0.56 8.70 45.56 0.40 -0.16 16 23 H 0.13 -0.12 7.96 -51.93 -0.41 -0.53 16 24 H -0.24 -0.30 7.11 56.52 0.40 0.10 16 25 H -0.24 -0.49 7.11 56.52 0.40 -0.08 16 26 H 0.14 0.10 6.70 -52.49 -0.35 -0.25 16 27 H 0.12 0.03 6.55 -52.48 -0.34 -0.31 16 28 H 0.13 0.04 6.71 -52.49 -0.35 -0.31 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.09 0.00 6.38 -51.92 -0.33 -0.33 16 31 H 0.38 -1.23 9.12 45.56 0.42 -0.81 16 32 H 0.09 0.12 7.63 -51.93 -0.40 -0.28 16 33 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.12 -0.15 8.05 -52.49 -0.42 -0.57 16 35 H 0.12 -0.11 6.61 -52.48 -0.35 -0.45 16 36 H 0.17 -0.24 6.81 -52.49 -0.36 -0.59 16 LS Contribution 312.50 15.07 4.71 4.71 Total: 0.00 -5.68 312.50 -11.39 -17.06 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -3.39 Total: -6.75 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.30 Total: -5.16 kcal Atomic # 8 Polarization: -1.08 SS G_CDS: -0.93 Total: -2.02 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.26 Total: -5.65 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -5.68 -11.39 -17.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.010 kcal (2) G-P(sol) polarization free energy of solvation -5.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds