Wall clock time and date at job start Mon Mar 8 2021 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.33055 * 125.03464 * 299.72264 * 4 2 1 6 6 C 1.39374 * 114.91083 * 179.79561 * 5 4 2 7 7 C 1.48369 * 122.76387 * 180.20842 * 6 5 4 8 8 C 1.39355 * 120.12771 * 0.02562 * 7 6 5 9 9 C 1.38007 * 119.87823 * 179.74056 * 8 7 6 10 10 C 1.38326 * 120.12558 * 0.51259 * 9 8 7 11 11 C 1.50694 * 119.88239 * 179.74206 * 10 9 8 12 12 H 1.08995 * 112.85611 * 189.68655 * 11 10 9 13 13 C 1.53780 * 113.61517 * 320.88470 * 11 10 9 14 14 C 1.53955 * 87.02476 * 139.94786 * 13 11 10 15 15 H 1.09000 * 113.60974 * 89.19482 * 14 13 11 16 16 O 1.42894 * 113.67114 * 220.06861 * 14 13 11 17 17 C 1.53784 * 113.61214 * 58.48907 * 11 10 9 18 18 C 1.38333 * 120.24137 * 359.76029 * 10 9 8 19 19 C 1.38004 * 120.12436 * 359.97438 * 18 10 9 20 20 C 1.34562 * 114.46506 * 0.49169 * 6 5 4 21 21 S 1.75820 * 125.03462 * 120.02280 * 4 2 1 22 22 H 0.96698 * 113.99898 * 59.99565 * 1 2 3 23 23 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 24 24 H 1.48504 * 110.00019 * 298.68426 * 3 2 1 25 25 H 1.48503 * 110.00152 * 60.00114 * 3 2 1 26 26 H 1.07993 * 122.54191 * 359.97438 * 5 4 2 27 27 H 1.08006 * 120.05646 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.94244 * 180.25195 * 9 8 7 29 29 H 1.08997 * 113.61476 * 254.53403 * 13 11 10 30 30 H 1.09008 * 113.61263 * 25.42847 * 13 11 10 31 31 H 0.96701 * 114.00006 * 277.56134 * 16 14 13 32 32 H 1.08995 * 113.61942 * 334.57030 * 17 11 10 33 33 H 1.09006 * 113.61429 * 105.47660 * 17 11 10 34 34 H 1.08000 * 119.93398 * 180.02562 * 18 10 9 35 35 H 1.08005 * 120.06384 * 180.02562 * 19 18 10 36 36 H 1.07996 * 125.23052 * 179.75977 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6766 -1.9799 -1.5370 6 6 2.2447 -2.4209 -2.7308 7 6 2.0688 -3.8028 -3.2414 8 6 1.3092 -4.7230 -2.5216 9 6 1.1445 -6.0055 -3.0041 10 6 1.7405 -6.3814 -4.1944 11 6 1.5618 -7.7849 -4.7132 12 1 2.2091 -8.0084 -5.5612 13 6 1.5969 -8.8578 -3.6120 14 6 0.4516 -9.5561 -4.3676 15 1 0.7943 -10.2655 -5.1209 16 8 -0.5539 -10.0997 -3.5101 17 6 0.0918 -8.1751 -4.9406 18 6 2.5003 -5.4737 -4.9102 19 6 2.6672 -4.1870 -4.4400 20 6 2.9709 -1.4918 -3.3791 21 16 2.9468 0.0133 -2.4699 22 1 -0.3933 0.4418 -0.7650 23 1 1.7923 -0.5139 0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5616 2.4679 1.2085 26 1 1.0730 -2.6191 -0.9098 27 1 0.8471 -4.4319 -1.5898 28 1 0.5526 -6.7183 -2.4491 29 1 2.5226 -9.4328 -3.5920 30 1 1.3079 -8.4846 -2.6294 31 1 -0.3333 -10.9683 -3.1466 32 1 -0.6094 -7.6150 -4.3220 33 1 -0.1958 -8.1999 -5.9917 34 1 2.9630 -5.7723 -5.8392 35 1 3.2602 -3.4790 -4.9999 36 1 3.4885 -1.6465 -4.3142 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13019922_13419902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:34 Heat of formation + Delta-G solvation = 6.647904 kcal Electronic energy + Delta-G solvation = -19527.151590 eV Core-core repulsion = 16456.222409 eV Total energy + Delta-G solvation = -3070.929182 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.081 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23351 -40.00546 -38.76670 -37.50642 -35.92911 -32.69139 -32.04604 -30.47515 -27.13133 -26.69118 -26.27881 -23.82671 -23.29005 -22.16820 -20.47994 -20.02545 -18.95403 -18.62462 -17.67232 -17.30899 -16.51717 -16.37951 -16.15150 -15.71900 -15.56574 -15.30659 -14.78051 -14.48042 -14.41939 -14.02354 -13.95533 -13.66887 -13.51891 -13.44282 -13.29396 -12.53644 -12.49077 -12.40383 -12.26948 -12.11605 -11.65331 -11.53169 -11.32337 -10.79964 -10.71969 -10.30359 -9.89885 -9.68455 -8.80905 -5.07197 -0.36634 0.34267 0.46132 0.49696 0.76746 1.21538 1.55016 1.75788 1.85848 2.88868 3.27575 3.29394 3.55221 3.60506 3.64761 3.86599 3.93107 3.95674 4.00519 4.03540 4.11999 4.20028 4.39362 4.47279 4.49056 4.58093 4.63795 4.78573 4.80225 4.92619 4.97861 5.02322 5.06076 5.14033 5.19708 5.26217 5.35903 5.51226 5.68976 5.71733 6.02403 6.36440 6.89095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.039 4.039 3 Si 0.721 3.279 4 C -0.221 4.221 5 C -0.107 4.107 6 C -0.077 4.077 7 C -0.043 4.043 8 C -0.117 4.117 9 C -0.121 4.121 10 C -0.075 4.075 11 C -0.068 4.068 12 H 0.117 0.883 13 C -0.160 4.160 14 C 0.075 3.925 15 H 0.101 0.899 16 O -0.583 6.583 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.201 4.201 21 S 0.132 5.868 22 H 0.387 0.613 23 H 0.135 0.865 24 H -0.263 1.263 25 H -0.273 1.273 26 H 0.142 0.858 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -1.525 -2.210 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.151 4.151 3 Si 0.623 3.377 4 C -0.338 4.338 5 C -0.137 4.137 6 C -0.088 4.088 7 C -0.046 4.046 8 C -0.136 4.136 9 C -0.139 4.139 10 C -0.075 4.075 11 C -0.086 4.086 12 H 0.135 0.865 13 C -0.198 4.198 14 C 0.016 3.984 15 H 0.119 0.881 16 O -0.391 6.391 17 C -0.164 4.164 18 C -0.135 4.135 19 C -0.132 4.132 20 C -0.336 4.336 21 S 0.397 5.603 22 H 0.237 0.763 23 H 0.152 0.848 24 H -0.188 1.188 25 H -0.199 1.199 26 H 0.160 0.840 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.428 1.047 -2.018 4.978 hybrid contribution -1.543 -2.001 -0.029 2.526 sum 2.886 -0.954 -2.047 3.664 Atomic orbital electron populations 1.86592 1.17988 1.80303 1.50079 1.24579 0.83328 1.10726 0.96463 0.94368 0.90832 0.73059 0.79485 1.24768 1.07545 0.98675 1.02824 1.20125 1.01285 0.95253 0.97051 1.17904 1.01049 0.94059 0.95824 1.18575 0.98902 0.91529 0.95551 1.21326 0.98805 0.93353 1.00112 1.21062 1.00188 0.96111 0.96510 1.19891 0.97143 0.95701 0.94760 1.21343 0.97447 0.90392 0.99463 0.86487 1.23809 0.99896 0.97572 0.98483 1.23498 0.88056 0.94311 0.92536 0.88133 1.86492 1.45954 1.40149 1.66551 1.23185 0.96081 0.95296 1.01817 1.21246 0.98826 0.92956 1.00496 1.21395 0.99592 0.96929 0.95323 1.26133 1.05980 0.96133 1.05367 1.84174 1.48392 1.13093 1.14623 0.76312 0.84780 1.18822 1.19884 0.83991 0.85469 0.85638 0.89908 0.89938 0.75549 0.90651 0.89954 0.83869 0.84234 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.62 12.86 -148.98 -1.92 -3.53 16 2 C -0.04 -0.01 2.96 71.24 0.21 0.20 16 3 Si 0.72 -0.70 30.95 68.60 2.12 1.42 16 4 C -0.22 -0.31 5.71 24.53 0.14 -0.17 16 5 C -0.11 -0.35 9.37 21.38 0.20 -0.15 16 6 C -0.08 -0.26 5.79 -21.15 -0.12 -0.38 16 7 C -0.04 -0.18 5.88 -20.04 -0.12 -0.29 16 8 C -0.12 -0.50 9.50 22.48 0.21 -0.29 16 9 C -0.12 -0.43 8.52 22.24 0.19 -0.24 16 10 C -0.07 -0.14 5.30 -19.82 -0.10 -0.24 16 11 C -0.07 0.10 3.97 -11.01 -0.04 0.05 16 12 H 0.12 -0.55 8.08 -2.39 -0.02 -0.56 16 13 C -0.16 0.25 7.30 31.18 0.23 0.48 16 14 C 0.07 -0.09 5.21 31.18 0.16 0.07 16 15 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 16 O -0.58 -1.08 13.67 -148.98 -2.04 -3.11 16 17 C -0.13 -0.05 7.37 31.12 0.23 0.18 16 18 C -0.12 -0.09 9.69 22.24 0.22 0.13 16 19 C -0.11 -0.18 9.48 22.48 0.21 0.03 16 20 C -0.20 -0.11 10.51 66.98 0.70 0.59 16 21 S 0.13 -0.04 20.54 -56.49 -1.16 -1.20 16 22 H 0.39 -0.91 8.70 -74.06 -0.64 -1.55 16 23 H 0.13 -0.24 7.96 -2.39 -0.02 -0.26 16 24 H -0.26 -0.69 7.11 99.48 0.71 0.02 16 25 H -0.27 -1.42 7.11 99.48 0.71 -0.71 16 26 H 0.14 0.41 6.70 -2.91 -0.02 0.39 16 27 H 0.13 0.31 6.55 -2.91 -0.02 0.29 16 28 H 0.13 0.32 6.71 -2.91 -0.02 0.31 16 29 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.08 0.07 6.38 -2.38 -0.02 0.05 16 31 H 0.39 -2.55 9.12 -74.06 -0.68 -3.23 16 32 H 0.07 0.30 7.63 -2.39 -0.02 0.28 16 33 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.14 -0.54 8.05 -2.91 -0.02 -0.56 16 35 H 0.14 -0.37 6.61 -2.91 -0.02 -0.39 16 36 H 0.19 -0.71 6.81 -2.91 -0.02 -0.73 16 Total: 0.00 -13.22 312.50 -0.83 -14.05 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: -0.16 Total: -7.60 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 2.32 Total: -0.03 kcal Atomic # 8 Polarization: -2.69 SS G_CDS: -3.95 Total: -6.64 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.12 Total: 1.42 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.16 Total: -1.20 kcal Total: -13.22 -0.83 -14.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_13419902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.696 kcal (2) G-P(sol) polarization free energy of solvation -13.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds