Wall clock time and date at job start Mon Mar 8 2021 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47390 * 2 1 4 4 C 1.53004 * 109.47350 * 239.99493 * 2 1 3 5 5 O 1.45205 * 109.46930 * 119.99861 * 2 1 3 6 6 C 1.34634 * 117.00049 * 59.99854 * 5 2 1 7 7 O 1.21515 * 120.00176 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00119 * 180.02562 * 6 5 2 9 9 C 1.46499 * 120.00306 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.84989 * 336.20321 * 9 8 6 11 11 C 1.53784 * 113.69229 * 107.46494 * 9 8 6 12 12 C 1.53778 * 87.08161 * 89.12736 * 11 9 8 13 13 H 1.08995 * 113.69323 * 270.87382 * 12 11 9 14 14 C 1.50704 * 113.61322 * 139.98163 * 12 11 9 15 15 C 1.37983 * 119.93619 * 142.50254 * 14 12 11 16 16 C 1.39385 * 119.87402 * 179.97438 * 15 14 12 17 17 C 1.48369 * 120.11909 * 180.02562 * 16 15 14 18 18 C 1.34566 * 122.77338 * 0.02631 * 17 16 15 19 19 S 1.75850 * 109.54264 * 179.97438 * 18 17 16 20 20 C 1.75813 * 91.15349 * 0.02562 * 19 18 17 21 21 C 1.50697 * 125.03858 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47065 * 119.96966 * 21 20 19 23 23 Si 1.86304 * 109.47072 * 359.97438 * 21 20 19 24 24 C 1.33062 * 109.92596 * 359.72446 * 20 19 18 25 25 C 1.39332 * 119.75718 * 0.02562 * 16 15 14 26 26 C 1.38039 * 119.86965 * 359.97438 * 25 16 15 27 27 C 1.38304 * 120.12677 * 0.02562 * 26 25 16 28 28 C 1.53781 * 87.08079 * 25.43593 * 12 11 9 29 29 H 1.08999 * 109.47584 * 300.00618 * 1 2 3 30 30 H 1.09003 * 109.46738 * 60.00373 * 1 2 3 31 31 H 1.08999 * 109.47397 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47197 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46875 * 299.99543 * 3 2 1 34 34 H 1.08998 * 109.46885 * 59.99566 * 3 2 1 35 35 H 1.08992 * 109.47119 * 300.00173 * 4 2 1 36 36 H 1.08996 * 109.46478 * 60.00546 * 4 2 1 37 37 H 1.09004 * 109.46782 * 180.02562 * 4 2 1 38 38 H 0.97000 * 120.00151 * 0.02562 * 8 6 5 39 39 H 1.09008 * 113.61217 * 334.58197 * 11 9 8 40 40 H 1.08993 * 113.61548 * 203.68130 * 11 9 8 41 41 H 1.08001 * 120.06693 * 0.28108 * 15 14 12 42 42 H 1.08003 * 125.23103 * 0.02562 * 18 17 16 43 43 H 1.08990 * 109.47429 * 239.97528 * 21 20 19 44 44 H 0.96699 * 113.99905 * 180.02562 * 22 21 20 45 45 H 1.48500 * 109.99646 * 298.68332 * 23 21 20 46 46 H 1.48504 * 110.00059 * 59.99720 * 23 21 20 47 47 H 1.08002 * 122.54001 * 180.26965 * 24 20 19 48 48 H 1.07991 * 120.06817 * 180.02562 * 25 16 15 49 49 H 1.08010 * 119.93390 * 180.02562 * 26 25 16 50 50 H 1.08000 * 119.87282 * 179.97438 * 27 26 25 51 51 H 1.08997 * 113.61718 * 89.11310 * 28 12 11 52 52 H 1.09004 * 113.61391 * 220.01606 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0670 -2.6653 2.4173 9 6 1.6729 -4.0664 2.5839 10 1 0.7586 -4.3159 2.0454 11 6 2.8194 -5.0634 2.3458 12 6 3.1475 -4.9225 3.8415 13 1 3.8453 -4.1150 4.0627 14 6 3.5292 -6.2228 4.5008 15 6 4.5180 -6.2427 5.4630 16 6 4.8696 -7.4460 6.0724 17 6 5.9317 -7.4735 7.1081 18 6 6.5926 -6.3700 7.5033 19 16 7.7678 -6.7990 8.7390 20 6 7.2929 -8.4897 8.6540 21 6 7.8903 -9.5988 9.4811 22 8 6.8670 -10.2085 10.2705 23 14 9.2047 -8.8995 10.6009 24 6 6.3233 -8.6437 7.7559 25 6 4.2201 -8.6227 5.7054 26 6 3.2324 -8.5909 4.7416 27 6 2.8876 -7.3942 4.1402 28 6 1.6733 -4.5367 4.0481 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7217 -1.2489 38 1 2.6260 -2.2363 3.0839 39 1 3.6012 -4.6810 1.6894 40 1 2.4798 -6.0603 2.0652 41 1 5.0151 -5.3269 5.7471 42 1 6.4262 -5.3737 7.1209 43 1 8.3338 -10.3450 8.8220 44 1 7.1805 -10.9324 10.8298 45 1 10.2904 -8.2906 9.7912 46 1 8.6127 -7.8807 11.5047 47 1 5.8759 -9.6034 7.5428 48 1 4.4883 -9.5577 6.1745 49 1 2.7280 -9.5025 4.4565 50 1 2.1145 -7.3741 3.3863 51 1 1.0204 -5.3897 4.2329 52 1 1.5298 -3.7291 4.7660 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13019922_14315990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:22 Heat of formation + Delta-G solvation = -22.266089 kcal Electronic energy + Delta-G solvation = -32308.790490 eV Core-core repulsion = 27946.585165 eV Total energy + Delta-G solvation = -4362.205325 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.154 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.02979 -41.20014 -40.07856 -38.76574 -37.88127 -37.32082 -35.39209 -34.22413 -32.91121 -31.85443 -30.46444 -28.39534 -28.33086 -27.31831 -26.73212 -26.16665 -24.98387 -23.82483 -22.59843 -22.11929 -21.19638 -20.59058 -19.67696 -19.37698 -18.52717 -18.36153 -17.73837 -17.60287 -17.22389 -16.74473 -16.45142 -16.26275 -15.95674 -15.80374 -15.50839 -15.37705 -14.92353 -14.84814 -14.60363 -14.57881 -14.41122 -14.31798 -13.99190 -13.83745 -13.57167 -13.42531 -13.38093 -13.30556 -13.04263 -12.94885 -12.89693 -12.78564 -12.67252 -12.50377 -12.47666 -12.33620 -12.19682 -11.93700 -11.76556 -11.68994 -11.42847 -11.25260 -11.13414 -10.62095 -10.33522 -10.21605 -9.80858 -9.67856 -8.96440 -5.24952 -0.44497 0.30289 0.40153 0.43580 0.69644 1.09997 1.17299 1.53050 1.69345 1.72669 1.88521 2.88032 3.07851 3.30019 3.41883 3.59610 3.65766 3.71354 3.76797 3.77684 3.80917 3.91265 3.91600 3.99269 4.04839 4.13099 4.22504 4.37738 4.41136 4.45051 4.47756 4.50273 4.57948 4.58703 4.69619 4.73701 4.75992 4.76701 4.80358 4.84867 4.87179 4.94442 4.99382 5.00370 5.04947 5.06487 5.13903 5.15772 5.23010 5.24464 5.28912 5.43748 5.54278 5.56549 5.65409 5.70009 6.03061 6.34843 6.83070 7.29931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.683 5.683 9 C 0.133 3.867 10 H 0.095 0.905 11 C -0.141 4.141 12 C -0.067 4.067 13 H 0.106 0.894 14 C -0.070 4.070 15 C -0.114 4.114 16 C -0.040 4.040 17 C -0.071 4.071 18 C -0.196 4.196 19 S 0.061 5.939 20 C -0.188 4.188 21 C -0.040 4.040 22 O -0.561 6.561 23 Si 0.755 3.245 24 C -0.098 4.098 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.123 4.123 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.186 0.814 43 H 0.107 0.893 44 H 0.406 0.594 45 H -0.271 1.271 46 H -0.283 1.283 47 H 0.156 0.844 48 H 0.130 0.870 49 H 0.142 0.858 50 H 0.141 0.859 51 H 0.108 0.892 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -1.933 1.872 3.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.113 0.887 11 C -0.179 4.179 12 C -0.085 4.085 13 H 0.124 0.876 14 C -0.070 4.070 15 C -0.133 4.133 16 C -0.042 4.042 17 C -0.083 4.083 18 C -0.330 4.330 19 S 0.326 5.674 20 C -0.304 4.304 21 C -0.153 4.153 22 O -0.371 6.371 23 Si 0.659 3.341 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.161 4.161 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.203 0.797 43 H 0.125 0.875 44 H 0.258 0.742 45 H -0.197 1.197 46 H -0.210 1.210 47 H 0.173 0.827 48 H 0.148 0.852 49 H 0.160 0.840 50 H 0.158 0.842 51 H 0.127 0.873 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.032 -0.130 2.252 3.779 hybrid contribution -0.968 -0.515 -0.916 1.429 sum 2.064 -0.645 1.336 2.542 Atomic orbital electron populations 1.22474 0.93983 1.03723 1.03542 1.22364 0.94506 0.92565 0.81472 1.21894 1.02436 0.90877 1.04273 1.22472 1.01596 1.02270 0.97374 1.86311 1.71526 1.23256 1.47327 1.18310 0.78560 0.80719 0.82453 1.90907 1.42237 1.71026 1.44121 1.44373 1.54956 1.11860 1.23083 1.21861 0.98607 0.78111 0.98597 0.88659 1.23594 0.98241 1.00340 0.95763 1.21590 0.97392 0.94580 0.94965 0.87590 1.19700 0.95726 0.95279 0.96246 1.21214 0.97996 0.97235 0.96831 1.18498 0.95488 0.94491 0.95735 1.18001 0.98629 0.92644 0.99007 1.26055 1.00960 1.03414 1.02602 1.84423 1.40297 1.02484 1.40242 1.23759 1.05037 0.97002 1.04590 1.24123 0.97068 0.95858 0.98215 1.86457 1.35679 1.54620 1.60360 0.94034 0.76323 0.83503 0.80243 1.20212 0.96799 0.99956 0.95836 1.21397 0.96727 0.97687 0.98212 1.21349 0.97147 0.99056 0.96088 1.21331 1.00211 0.91889 1.00177 1.23413 0.95807 1.02308 0.94582 0.91931 0.89429 0.91757 0.91217 0.88274 0.91172 0.91766 0.89429 0.92004 0.74679 0.91538 0.87690 0.85110 0.79664 0.87512 0.74179 1.19726 1.20978 0.82699 0.85185 0.84009 0.84160 0.87339 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.25 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.64 8.37 71.98 0.60 -0.04 16 5 O -0.37 -2.13 9.94 -55.43 -0.55 -2.68 16 6 C 0.65 4.46 8.06 129.79 1.05 5.50 16 7 O -0.59 -7.23 11.48 19.79 0.23 -7.00 16 8 N -0.68 -0.38 5.27 -567.61 -2.99 -3.37 16 9 C 0.13 -0.15 4.32 45.52 0.20 0.05 16 10 H 0.10 0.21 7.46 -2.39 -0.02 0.19 16 11 C -0.14 0.31 7.25 31.12 0.23 0.54 16 12 C -0.07 0.25 3.86 -11.01 -0.04 0.21 16 13 H 0.11 -0.55 8.09 -2.39 -0.02 -0.57 16 14 C -0.07 0.03 5.28 -19.90 -0.11 -0.07 16 15 C -0.11 -0.20 9.14 22.49 0.21 0.01 16 16 C -0.04 -0.17 5.88 -20.04 -0.12 -0.28 16 17 C -0.07 -0.39 5.79 -21.15 -0.12 -0.52 16 18 C -0.20 -0.87 10.51 66.98 0.70 -0.16 16 19 S 0.06 0.39 20.54 -56.49 -1.16 -0.77 16 20 C -0.19 -1.05 5.74 24.53 0.14 -0.91 16 21 C -0.04 0.01 2.95 71.24 0.21 0.22 16 22 O -0.56 0.27 12.83 -148.98 -1.91 -1.64 16 23 Si 0.76 -0.96 30.95 68.60 2.12 1.16 16 24 C -0.10 -0.54 9.36 21.38 0.20 -0.34 16 25 C -0.12 -0.31 9.50 22.49 0.21 -0.09 16 26 C -0.12 -0.02 10.03 22.24 0.22 0.20 16 27 C -0.12 0.10 8.60 22.31 0.19 0.29 16 28 C -0.12 0.57 7.29 31.12 0.23 0.80 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 36 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.42 -1.57 8.81 -92.71 -0.82 -2.39 16 39 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.10 -0.36 6.30 -2.39 -0.02 -0.37 16 41 H 0.13 -0.17 6.61 -2.91 -0.02 -0.18 16 42 H 0.19 -0.07 6.81 -2.91 -0.02 -0.09 16 43 H 0.11 -0.53 7.96 -2.39 -0.02 -0.55 16 44 H 0.41 -4.65 8.74 -74.06 -0.65 -5.30 16 45 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 46 H -0.28 -1.83 7.11 99.48 0.71 -1.12 16 47 H 0.16 0.43 6.71 -2.91 -0.02 0.41 16 48 H 0.13 0.03 6.55 -2.92 -0.02 0.02 16 49 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 50 H 0.14 -0.64 6.65 -2.91 -0.02 -0.66 16 51 H 0.11 -0.58 7.72 -2.39 -0.02 -0.60 16 52 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 Total: 0.00 -20.19 427.01 0.50 -19.69 By element: Atomic # 1 Polarization: -11.61 SS G_CDS: -0.46 Total: -12.07 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.23 Total: 6.68 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.99 Total: -3.37 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -2.23 Total: -11.32 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.12 Total: 1.16 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.16 Total: -0.77 kcal Total: -20.19 0.50 -19.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_14315990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.572 kcal (2) G-P(sol) polarization free energy of solvation -20.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds