Wall clock time and date at job start Mon Mar 8 2021 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47780 * 120.00199 * 2 1 4 4 C 1.34796 * 122.80745 * 133.70506 * 3 2 1 5 5 S 1.75850 * 109.52433 * 180.26519 * 4 3 2 6 6 C 1.75799 * 91.18425 * 359.65824 * 5 4 3 7 7 C 1.50695 * 125.00631 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47060 * 120.34379 * 7 6 5 9 9 Si 1.86303 * 109.47103 * 0.34675 * 7 6 5 10 10 H 1.48501 * 109.47135 * 59.99669 * 9 7 6 11 11 H 1.48493 * 109.47404 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46775 * 300.00030 * 9 7 6 13 13 C 1.32987 * 109.98962 * 0.34561 * 6 5 4 14 14 Si 1.86802 * 119.99693 * 179.97438 * 2 1 3 15 15 C 1.86298 * 109.47074 * 272.80009 * 14 2 1 16 16 C 1.86299 * 109.47202 * 32.79996 * 14 2 1 17 17 C 1.86297 * 109.47044 * 152.79707 * 14 2 1 18 18 H 1.08001 * 120.00237 * 179.97438 * 1 2 3 19 19 H 1.07996 * 119.99327 * 0.02562 * 1 2 3 20 20 H 1.07997 * 125.24266 * 0.02562 * 4 3 2 21 21 H 1.08992 * 109.47483 * 240.34721 * 7 6 5 22 22 H 0.96700 * 114.00260 * 299.99747 * 8 7 6 23 23 H 1.08005 * 122.53626 * 179.75879 * 13 6 5 24 24 H 1.08993 * 109.47313 * 60.00427 * 15 14 2 25 25 H 1.09008 * 109.46965 * 180.02562 * 15 14 2 26 26 H 1.09003 * 109.47355 * 299.99774 * 15 14 2 27 27 H 1.08998 * 109.47301 * 59.99659 * 16 14 2 28 28 H 1.08998 * 109.47182 * 179.97438 * 16 14 2 29 29 H 1.08997 * 109.47165 * 300.00137 * 16 14 2 30 30 H 1.09001 * 109.46821 * 65.89885 * 17 14 2 31 31 H 1.08997 * 109.47265 * 185.89598 * 17 14 2 32 32 H 1.08989 * 109.47508 * 305.90112 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0651 1.2798 0.0000 4 6 3.1082 1.5208 0.8190 5 16 3.7174 3.1453 0.5322 6 6 2.5094 3.4174 -0.7156 7 6 2.3609 4.6875 -1.5129 8 8 2.5230 4.3990 -2.9031 9 14 3.6588 5.9121 -0.9774 10 1 5.0080 5.3368 -1.2095 11 1 3.5122 7.1640 -1.7625 12 1 3.4904 6.2119 0.4673 13 6 1.7414 2.3397 -0.8476 14 14 2.2600 -1.6178 0.0007 15 6 2.4962 -2.1977 1.7553 16 6 1.2919 -2.8942 -0.9502 17 6 3.9234 -1.3749 -0.8023 18 1 -0.5400 -0.9353 -0.0004 19 1 -0.5399 0.9353 -0.0004 20 1 3.5059 0.8250 1.5429 21 1 1.3707 5.1099 -1.3425 22 1 3.3835 4.0197 -3.1284 23 1 0.9291 2.2887 -1.5575 24 1 1.5230 -2.3399 2.2251 25 1 3.0416 -3.1415 1.7557 26 1 3.0627 -1.4510 2.3117 27 1 1.1536 -2.5549 -1.9767 28 1 1.8370 -3.8381 -0.9501 29 1 0.3187 -3.0363 -0.4804 30 1 4.5291 -0.7080 -0.1888 31 1 4.4254 -2.3378 -0.8966 32 1 3.7890 -0.9369 -1.7912 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13019922_14924794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:56 Heat of formation + Delta-G solvation = -32.598904 kcal Electronic energy + Delta-G solvation = -13351.796228 eV Core-core repulsion = 11141.620447 eV Total energy + Delta-G solvation = -2210.175781 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 242.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53838 -37.65892 -33.65844 -31.05155 -29.56674 -28.44313 -28.35587 -26.84403 -24.17115 -21.57431 -19.53347 -18.38700 -17.50793 -16.58023 -16.30025 -15.60561 -15.14531 -14.49974 -14.22340 -14.14670 -13.96425 -13.88710 -13.71011 -13.43586 -13.32908 -13.23582 -13.14581 -12.99757 -12.43125 -12.32956 -12.13333 -11.61302 -11.33974 -10.90533 -10.86440 -10.63584 -10.29193 -9.60458 -9.04352 -0.06915 0.57320 0.79592 0.92512 1.16155 1.38043 1.53811 1.61916 1.85131 1.87706 1.91595 2.27644 2.59168 3.38516 3.75046 4.08863 4.28736 4.49034 4.64129 4.66565 4.68546 4.72218 4.72891 4.77248 4.78489 4.82549 5.05424 5.29714 5.35223 5.42960 5.50372 5.53601 5.58951 5.84662 6.45990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.353 4.353 3 C -0.052 4.052 4 C -0.206 4.206 5 S 0.082 5.918 6 C -0.221 4.221 7 C -0.038 4.038 8 O -0.534 6.534 9 Si 0.896 3.104 10 H -0.235 1.235 11 H -0.229 1.229 12 H -0.234 1.234 13 C -0.093 4.093 14 Si 1.048 2.952 15 C -0.448 4.448 16 C -0.449 4.449 17 C -0.445 4.445 18 H 0.105 0.895 19 H 0.094 0.906 20 H 0.167 0.833 21 H 0.124 0.876 22 H 0.378 0.622 23 H 0.143 0.857 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -1.402 0.491 1.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.396 4.396 3 C -0.064 4.064 4 C -0.341 4.341 5 S 0.347 5.653 6 C -0.338 4.338 7 C -0.151 4.151 8 O -0.339 6.339 9 Si 0.716 3.284 10 H -0.158 1.158 11 H -0.152 1.152 12 H -0.157 1.157 13 C -0.123 4.123 14 Si 1.240 2.760 15 C -0.555 4.555 16 C -0.556 4.556 17 C -0.553 4.553 18 H 0.123 0.877 19 H 0.112 0.888 20 H 0.184 0.816 21 H 0.142 0.858 22 H 0.225 0.775 23 H 0.160 0.840 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.424 0.402 1.365 2.013 hybrid contribution -1.017 -1.285 -0.563 1.733 sum 0.407 -0.884 0.803 1.261 Atomic orbital electron populations 1.24279 0.95548 1.01890 0.94872 1.27717 1.00693 1.07068 1.04144 1.17976 0.96443 0.95061 0.96914 1.25772 1.02236 0.99668 1.06400 1.84333 1.34473 1.11327 1.35184 1.24678 1.02578 1.01801 1.04756 1.24334 1.10202 0.97275 0.83330 1.86527 1.40637 1.85490 1.21251 0.86249 0.78814 0.80910 0.82447 1.15770 1.15154 1.15713 1.20163 1.00462 0.91584 1.00123 0.78359 0.66465 0.63545 0.67627 1.26128 1.04821 1.05962 1.18603 1.26135 1.08774 1.11882 1.08857 1.26092 1.16957 1.04577 1.07667 0.87668 0.88779 0.81572 0.85809 0.77477 0.83958 0.91111 0.90992 0.91309 0.91003 0.90915 0.91177 0.91190 0.91208 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 13.46 28.83 0.39 0.47 16 2 C -0.35 0.11 4.50 -37.58 -0.17 -0.06 16 3 C -0.05 -0.05 5.14 -106.74 -0.55 -0.60 16 4 C -0.21 -0.14 10.01 29.51 0.30 0.15 16 5 S 0.08 0.09 20.53 -107.50 -2.21 -2.12 16 6 C -0.22 -0.24 5.70 -36.13 -0.21 -0.44 16 7 C -0.04 0.00 2.96 36.00 0.11 0.10 16 8 O -0.53 -0.29 12.85 -35.23 -0.45 -0.75 16 9 Si 0.90 0.04 26.23 -169.99 -4.46 -4.42 16 10 H -0.23 -0.08 7.11 56.52 0.40 0.32 16 11 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 12 H -0.23 -0.17 7.11 56.52 0.40 0.23 16 13 C -0.09 -0.13 9.48 -40.92 -0.39 -0.51 16 14 Si 1.05 -2.20 11.55 -169.99 -1.96 -4.17 16 15 C -0.45 0.67 8.65 101.05 0.87 1.55 16 16 C -0.45 0.70 8.55 101.05 0.86 1.57 16 17 C -0.44 0.43 8.65 101.05 0.87 1.31 16 18 H 0.11 -0.24 7.35 -52.49 -0.39 -0.62 16 19 H 0.09 -0.03 7.92 -52.49 -0.42 -0.45 16 20 H 0.17 -0.20 7.78 -52.49 -0.41 -0.60 16 21 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 22 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 23 H 0.14 0.13 8.06 -52.48 -0.42 -0.29 16 24 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 25 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.13 7.68 -51.93 -0.40 -0.53 16 30 H 0.07 -0.05 7.65 -51.93 -0.40 -0.45 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 LS Contribution 288.42 15.07 4.35 4.35 Total: 0.00 -3.59 288.42 -6.78 -10.37 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -4.14 Total: -6.78 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 2.09 Total: 3.52 kcal Atomic # 8 Polarization: -0.29 SS G_CDS: -0.45 Total: -0.75 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: -6.42 Total: -8.59 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.21 Total: -2.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -3.59 -6.78 -10.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_14924794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.230 kcal (2) G-P(sol) polarization free energy of solvation -3.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds