Wall clock time and date at job start Mon Mar 8 2021 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40077 * 126.13130 * 2 1 4 4 C 1.30877 * 108.51623 * 180.17016 * 3 2 1 5 5 C 1.50700 * 125.70629 * 179.85518 * 4 3 2 6 6 O 1.42894 * 109.46867 * 179.69338 * 5 4 3 7 7 Si 1.63104 * 113.99909 * 179.97438 * 6 5 4 8 8 C 1.86305 * 109.47233 * 299.99978 * 7 6 5 9 9 C 1.86299 * 109.47099 * 59.99963 * 7 6 5 10 10 C 1.86302 * 109.47358 * 179.97438 * 7 6 5 11 11 C 1.53002 * 109.46821 * 60.00273 * 10 7 6 12 12 C 1.52997 * 109.47335 * 179.97438 * 10 7 6 13 13 C 1.52995 * 109.47135 * 300.00449 * 10 7 6 14 14 C 1.39540 * 108.58602 * 359.58686 * 4 3 2 15 15 C 1.36259 * 126.13521 * 179.71104 * 2 1 3 16 16 C 1.47986 * 126.33897 * 0.02562 * 15 2 1 17 17 C 1.34733 * 122.79542 * 341.63007 * 16 15 2 18 18 S 1.75848 * 109.53089 * 179.86929 * 17 16 15 19 19 C 1.75807 * 91.17477 * 0.33267 * 18 17 16 20 20 C 1.50699 * 125.01159 * 179.82982 * 19 18 17 21 21 O 1.42897 * 109.46843 * 119.97932 * 20 19 18 22 22 Si 1.86298 * 109.47399 * 359.97438 * 20 19 18 23 23 H 1.48506 * 109.46693 * 60.00056 * 22 20 19 24 24 H 1.48497 * 109.47115 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47429 * 300.00211 * 22 20 19 26 26 C 1.33001 * 109.97354 * 359.81182 * 19 18 17 27 27 H 1.09002 * 109.46746 * 264.04664 * 1 2 3 28 28 H 1.09000 * 109.46729 * 24.04906 * 1 2 3 29 29 H 1.09003 * 109.46629 * 144.04722 * 1 2 3 30 30 H 1.09002 * 109.46472 * 299.68812 * 5 4 3 31 31 H 1.08992 * 109.47539 * 59.69040 * 5 4 3 32 32 H 1.08999 * 109.46751 * 59.99756 * 8 7 6 33 33 H 1.08999 * 109.47041 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.46916 * 300.00134 * 8 7 6 35 35 H 1.09004 * 109.47031 * 59.99631 * 9 7 6 36 36 H 1.08999 * 109.47342 * 179.97438 * 9 7 6 37 37 H 1.09009 * 109.47178 * 300.00218 * 9 7 6 38 38 H 1.08994 * 109.47368 * 59.99827 * 11 10 7 39 39 H 1.09004 * 109.47098 * 180.02562 * 11 10 7 40 40 H 1.09001 * 109.46942 * 299.99341 * 11 10 7 41 41 H 1.09005 * 109.46903 * 59.99810 * 12 10 7 42 42 H 1.08999 * 109.47428 * 180.02562 * 12 10 7 43 43 H 1.09002 * 109.46990 * 299.99952 * 12 10 7 44 44 H 1.09002 * 109.47587 * 59.99431 * 13 10 7 45 45 H 1.08997 * 109.47308 * 180.02562 * 13 10 7 46 46 H 1.09001 * 109.47061 * 299.99609 * 13 10 7 47 47 H 1.08000 * 126.08202 * 180.24290 * 14 4 3 48 48 H 1.07996 * 125.23593 * 359.97161 * 17 16 15 49 49 H 1.09001 * 109.47006 * 239.97678 * 20 19 18 50 50 H 0.96701 * 113.99994 * 299.99820 * 21 20 19 51 51 H 1.08004 * 122.54213 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1314 0.0000 4 6 3.5384 0.7353 -0.0037 5 6 4.7470 1.6355 -0.0081 6 8 5.9337 0.8395 -0.0041 7 14 7.3146 1.7074 -0.0090 8 6 7.3728 2.7733 -1.5359 9 6 7.3734 2.7895 1.5063 10 6 8.7751 0.5508 -0.0024 11 6 8.7272 -0.3383 -1.2467 12 6 10.0705 1.3649 -0.0077 13 6 8.7271 -0.3242 1.2517 14 6 3.5621 -0.6599 0.0034 15 6 2.2685 -1.1004 0.0056 16 6 1.8229 -2.5116 0.0121 17 6 0.5780 -2.8821 0.3704 18 16 0.4267 -4.6298 0.2479 19 6 2.0961 -4.7733 -0.2842 20 6 2.7879 -6.0692 -0.6207 21 8 3.2257 -6.0362 -1.9806 22 14 1.6018 -7.4861 -0.3843 23 1 0.4294 -7.3044 -1.2775 24 1 2.2834 -8.7629 -0.7165 25 1 1.1468 -7.5204 1.0288 26 6 2.6583 -3.5696 -0.3463 27 1 -0.3633 -0.1066 1.0222 28 1 -0.3633 0.9385 -0.4188 29 1 -0.3633 -0.8319 -0.6034 30 1 4.7314 2.2601 -0.9013 31 1 4.7315 2.2690 0.8786 32 1 6.5183 3.4500 -1.5393 33 1 8.2955 3.3536 -1.5389 34 1 7.3384 2.1402 -2.4225 35 1 7.3393 2.1658 2.3997 36 1 8.2965 3.3692 1.5033 37 1 6.5189 3.4663 1.5029 38 1 8.7613 0.2850 -2.1402 39 1 9.5814 -1.0154 -1.2426 40 1 7.8043 -0.9184 -1.2433 41 1 10.1049 1.9987 0.8785 42 1 10.9250 0.6882 -0.0043 43 1 10.1045 1.9879 -0.9015 44 1 7.8042 -0.9042 1.2551 45 1 9.5818 -1.0006 1.2559 46 1 8.7613 0.3092 2.1382 47 1 4.4456 -1.2810 0.0062 48 1 -0.2067 -2.2092 0.6829 49 1 3.6485 -6.2025 0.0349 50 1 2.5108 -5.9196 -2.6212 51 1 3.6840 -3.4224 -0.6508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13019922_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:06:29 Heat of formation + Delta-G solvation = -20.977024 kcal Electronic energy + Delta-G solvation = -29063.983450 eV Core-core repulsion = 25215.099622 eV Total energy + Delta-G solvation = -3848.883828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17002 -39.38533 -38.04998 -37.46635 -36.80603 -34.38411 -32.19368 -30.58592 -29.48011 -29.05569 -28.90824 -27.82641 -27.34543 -27.02055 -26.04934 -24.46522 -21.84344 -20.85168 -20.35939 -20.06613 -18.68766 -17.75381 -17.62403 -17.36692 -16.76475 -16.35743 -16.06701 -15.93151 -15.81612 -15.47475 -15.40034 -14.83702 -14.77640 -14.66295 -14.50925 -14.22155 -14.04149 -13.97352 -13.73402 -13.63380 -13.43367 -13.38295 -13.21293 -13.18953 -12.93584 -12.89280 -12.87444 -12.52906 -12.39959 -12.37867 -12.18623 -12.00578 -11.75862 -11.63733 -11.58910 -11.53862 -11.36115 -10.74935 -10.51546 -10.32415 -10.04713 -9.81636 -9.59289 -8.96381 -0.36819 0.34797 0.64807 0.68865 1.04306 1.23721 1.32594 1.44726 1.57699 1.66919 1.77354 1.82799 2.07909 2.21751 2.45212 3.27948 3.48057 3.59438 3.67327 3.94271 3.99488 4.12310 4.15154 4.15288 4.23322 4.29148 4.42605 4.43896 4.47046 4.47777 4.54565 4.70937 4.75287 4.76346 4.76740 4.81743 4.84375 4.89346 4.89363 5.03547 5.09028 5.13809 5.14170 5.15928 5.23650 5.32621 5.37393 5.45592 5.45850 5.53447 5.56692 5.63561 5.76519 6.04648 6.41515 6.79977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.368 5.368 3 N -0.284 5.284 4 C 0.070 3.930 5 C 0.171 3.829 6 O -0.620 6.620 7 Si 1.293 2.707 8 C -0.513 4.513 9 C -0.513 4.513 10 C -0.373 4.373 11 C -0.134 4.134 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.214 4.214 15 C 0.130 3.870 16 C -0.039 4.039 17 C -0.206 4.206 18 S 0.112 5.888 19 C -0.217 4.217 20 C -0.038 4.038 21 O -0.531 6.531 22 Si 0.894 3.106 23 H -0.235 1.235 24 H -0.227 1.227 25 H -0.233 1.233 26 C -0.079 4.079 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.158 0.842 48 H 0.170 0.830 49 H 0.129 0.871 50 H 0.378 0.622 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -1.011 0.027 2.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.151 5.151 3 N -0.109 5.109 4 C -0.095 4.095 5 C 0.093 3.907 6 O -0.578 6.578 7 Si 1.425 2.575 8 C -0.615 4.615 9 C -0.615 4.615 10 C -0.417 4.417 11 C -0.191 4.191 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.244 4.244 15 C 0.002 3.998 16 C -0.054 4.054 17 C -0.343 4.343 18 S 0.378 5.622 19 C -0.334 4.334 20 C -0.152 4.152 21 O -0.337 6.337 22 Si 0.714 3.286 23 H -0.158 1.158 24 H -0.149 1.149 25 H -0.156 1.156 26 C -0.109 4.109 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.175 0.825 48 H 0.187 0.813 49 H 0.146 0.854 50 H 0.226 0.774 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.019 -2.101 0.693 4.587 hybrid contribution 1.549 1.297 -0.429 2.065 sum -2.470 -0.804 0.264 2.611 Atomic orbital electron populations 1.22053 0.74348 1.05066 1.03195 1.48600 1.06183 1.02701 1.57637 1.77251 1.00850 1.07210 1.25545 1.21932 0.92533 0.94530 1.00496 1.19931 0.80069 0.88844 1.01812 1.85250 1.27462 1.53537 1.91580 0.76627 0.56326 0.59522 0.65046 1.27046 1.04629 1.11299 1.18488 1.27051 1.04623 1.11511 1.18288 1.25764 1.11001 1.06544 0.98366 1.21516 1.02186 0.99298 0.96144 1.21558 0.96648 0.99644 1.01558 1.21514 1.02161 0.99387 0.96075 1.21200 0.95561 0.94166 1.13451 1.19144 0.90733 0.86330 1.03585 1.17032 0.93355 0.90669 1.04295 1.26078 1.00856 0.98692 1.08643 1.84421 1.10100 1.02103 1.65624 1.24740 0.97438 1.00114 1.11079 1.24371 1.05712 0.98160 0.86920 1.86550 1.37369 1.95762 1.13983 0.86269 0.79034 0.79963 0.83355 1.15752 1.14874 1.15598 1.19925 1.01511 0.89584 0.99900 0.90519 0.88640 0.89345 0.90576 0.90605 0.91383 0.90682 0.90771 0.90797 0.90681 0.91382 0.92706 0.92833 0.92031 0.92524 0.92513 0.92514 0.92042 0.92836 0.92730 0.82463 0.81281 0.85387 0.77440 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.12 9.78 59.85 0.59 0.47 16 2 N -0.37 -0.98 4.05 -64.15 -0.26 -1.24 16 3 N -0.28 -1.22 12.56 33.61 0.42 -0.80 16 4 C 0.07 0.24 7.16 -82.51 -0.59 -0.36 16 5 C 0.17 0.15 5.74 36.01 0.21 0.36 16 6 O -0.62 -0.37 7.88 -35.23 -0.28 -0.65 16 7 Si 1.29 -1.33 8.45 -169.99 -1.44 -2.76 16 8 C -0.51 0.31 8.50 101.05 0.86 1.17 16 9 C -0.51 0.31 8.50 101.05 0.86 1.17 16 10 C -0.37 0.14 0.53 -90.62 -0.05 0.09 16 11 C -0.13 0.00 7.84 37.16 0.29 0.29 16 12 C -0.14 0.09 7.85 37.16 0.29 0.38 16 13 C -0.13 0.00 7.85 37.16 0.29 0.29 16 14 C -0.21 -0.66 9.70 -39.67 -0.38 -1.05 16 15 C 0.13 0.35 6.82 -82.48 -0.56 -0.22 16 16 C -0.04 -0.05 5.76 -106.68 -0.61 -0.66 16 17 C -0.21 0.05 9.77 29.49 0.29 0.34 16 18 S 0.11 -0.04 20.53 -107.50 -2.21 -2.25 16 19 C -0.22 0.04 5.70 -36.12 -0.21 -0.17 16 20 C -0.04 0.04 2.96 36.01 0.11 0.15 16 21 O -0.53 0.24 12.85 -35.23 -0.45 -0.21 16 22 Si 0.89 -0.97 26.23 -169.99 -4.46 -5.42 16 23 H -0.23 0.20 7.11 56.52 0.40 0.60 16 24 H -0.23 0.02 7.11 56.52 0.40 0.42 16 25 H -0.23 0.11 7.11 56.52 0.40 0.51 16 26 C -0.08 -0.05 9.57 -40.93 -0.39 -0.44 16 27 H 0.08 -0.20 7.88 -51.93 -0.41 -0.61 16 28 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 29 H 0.09 -0.25 6.52 -51.93 -0.34 -0.58 16 30 H 0.08 -0.04 7.21 -51.93 -0.37 -0.41 16 31 H 0.08 -0.04 7.21 -51.93 -0.37 -0.41 16 32 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 33 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 34 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 35 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 36 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 37 H 0.07 -0.06 7.48 -51.92 -0.39 -0.44 16 38 H 0.05 -0.03 7.80 -51.93 -0.40 -0.43 16 39 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 40 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 41 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 42 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 43 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 44 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 45 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 47 H 0.16 0.32 7.77 -52.49 -0.41 -0.09 16 48 H 0.17 -0.37 5.60 -52.49 -0.29 -0.67 16 49 H 0.13 -0.26 7.96 -51.93 -0.41 -0.68 16 50 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 51 H 0.15 0.02 7.86 -52.48 -0.41 -0.39 16 LS Contribution 420.40 15.07 6.34 6.34 Total: 0.00 -6.27 420.40 -9.31 -15.58 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -7.96 Total: -10.40 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.98 Total: 1.82 kcal Atomic # 7 Polarization: -2.20 SS G_CDS: 0.16 Total: -2.04 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -0.73 Total: -0.86 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -5.90 Total: -8.19 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -6.27 -9.31 -15.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.398 kcal (2) G-P(sol) polarization free energy of solvation -6.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds